RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	TNNC2	P02585	160 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	GLA	P06280	429 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	CRYGC	P07315	174 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	ERCC1	P07992	297 aa	Predicted RBP	4.02	□□□□□ -1.77
SS18-223	ENST00000583595	FCGR3A	P08637	254 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	FBP1	P09467	338 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	GNAO1	P09471	354 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	KITLG	P21583	273 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	PRKACG	P22612	351 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	CPN2	P22792	545 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	OXTR	P30559	389 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	RORA	P35398	523 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	MARCKSL1	P49006	195 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	RAB9A	P51151	201 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	UBE2I	P63279	158 aa	Known RBP	4.02	□□□□□ -1.77
SS18-223	ENST00000583595	RAB40B	Q12829	278 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	STX5	Q13190	355 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	ZNF177	Q13360	481 aa	Predicted RBP	4.02	□□□□□ -1.77
SS18-223	ENST00000583595	ORC2	Q13416	577 aa	Predicted RBP	4.02	□□□□□ -1.77
SS18-223	ENST00000583595	KIAA0141	Q14154	515 aa	Predicted RBP	4.02	□□□□□ -1.77
SS18-223	ENST00000583595	NDUFA9	Q16795	377 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	MICA	Q29983	383 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	SBK1	Q52WX2	424 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	ACER2	Q5QJU3	275 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	TPRG1L	Q5T0D9	272 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	C1orf220	Q5T0J3	134 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	TMEM236	Q5W0B7	351 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	FAHD2B	Q6P2I3	314 aa	Predicted RBP	4.02	□□□□□ -1.77
SS18-223	ENST00000583595	ZNF530	Q6P9A1	599 aa	Predicted RBP	4.02	□□□□□ -1.77
SS18-223	ENST00000583595	TEX261	Q6UWH6	196 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	ENPP6	Q6UWR7	440 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	C3P1	Q6ZMU1	363 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595		Q6ZSR9	355 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	STRADA	Q7RTN6	431 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	NUFIP2	Q7Z417	695 aa	Known RBP	4.02	□□□□□ -1.77
SS18-223	ENST00000583595	COMTD1	Q86VU5	262 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	CYP4Z2P	Q8N1L4	340 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	CBR4	Q8N4T8	237 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	ZNF491	Q8N8L2	437 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	GDPD1	Q8N9F7	314 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	BBS1	Q8NFJ9	593 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	OR7G2	Q8NG99	324 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	OR1M1	Q8NGA1	313 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	OR10G7	Q8NGN6	311 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	RFESD	Q8TAC1	157 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	ZDHHC19	Q8WVZ1	309 aa	Predicted RBP	4.02	□□□□□ -1.77
SS18-223	ENST00000583595	C11orf52	Q96A22	123 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	FAF2	Q96CS3	445 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	FAHD2A	Q96GK7	314 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	CENPN	Q96H22	339 aa	Predicted RBP	4.02	□□□□□ -1.77
SS18-223	ENST00000583595	SLC45A3	Q96JT2	553 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	SERAC1	Q96JX3	654 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	RNF145	Q96MT1	663 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	OR5B2	Q96R09	309 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	OR5M11	Q96RB7	305 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	MBOAT4	Q96T53	435 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	TCEAL7	Q9BRU2	100 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	NIPSNAP3B	Q9BS92	247 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	COPS4	Q9BT78	406 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	NAT9	Q9BTE0	207 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	CLEC7A	Q9BXN2	247 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	ING2	Q9H160	280 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	ALX4	Q9H161	411 aa	Predicted RBP	4.02	□□□□□ -1.77
SS18-223	ENST00000583595	NT5M	Q9NPB1	228 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	FAM120C	Q9NX05	1096 aa	Known RBP	4.02	□□□□□ -1.77
SS18-223	ENST00000583595	THUMPD1	Q9NXG2	353 aa	Known RBP	4.02	□□□□□ -1.77
SS18-223	ENST00000583595	BABAM2	Q9NXR7	383 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	TMEM181	Q9P2C4	612 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	OPTC	Q9UBM4	332 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	KIF25	Q9UIL4	384 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	STARD10	Q9Y365	291 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595		U3KQ87	197 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	LAMB1	P07942	1786 aa		4.02	□□□□□ -1.77
SS18-223	ENST00000583595	TIAM2	Q8IVF5	1701 aa		4.01	□□□□□ -1.77
SS18-223	ENST00000583595	IGHV2-70D	A0A0C4DH43	119 aa		4.01	□□□□□ -1.77
SS18-223	ENST00000583595		A0A1B0GUS0	222 aa		4.01	□□□□□ -1.77
SS18-223	ENST00000583595		E7ESA3	106 aa		4.01	□□□□□ -1.77
SS18-223	ENST00000583595	BUB3	O43684	328 aa		4.01	□□□□□ -1.77
SS18-223	ENST00000583595	OR2F2	O95006	317 aa		4.01	□□□□□ -1.77
SS18-223	ENST00000583595	AP2A1	O95782	977 aa		4.01	□□□□□ -1.77
SS18-223	ENST00000583595	NUDT14	O95848	222 aa		4.01	□□□□□ -1.77
SS18-223	ENST00000583595	SERPINE1	P05121	402 aa		4.01	□□□□□ -1.77
SS18-223	ENST00000583595	HLA-E	P13747	358 aa		4.01	□□□□□ -1.77
SS18-223	ENST00000583595	WARS	P23381	471 aa	Known RBP	4.01	□□□□□ -1.77
SS18-223	ENST00000583595	CRHBP	P24387	322 aa		4.01	□□□□□ -1.77
SS18-223	ENST00000583595	FAS	P25445	335 aa		4.01	□□□□□ -1.77
SS18-223	ENST00000583595	GTF2E2	P29084	291 aa	Known RBP	4.01	□□□□□ -1.77
SS18-223	ENST00000583595	MMP12	P39900	470 aa		4.01	□□□□□ -1.77
SS18-223	ENST00000583595	CSK	P41240	450 aa		4.01	□□□□□ -1.77
SS18-223	ENST00000583595	RPS9	P46781	194 aa	Known RBP	4.01	□□□□□ -1.77
SS18-223	ENST00000583595	VEGFC	P49767	419 aa		4.01	□□□□□ -1.77
SS18-223	ENST00000583595	RIDA	P52758	137 aa	Known RBP	4.01	□□□□□ -1.77
SS18-223	ENST00000583595	ATP12A	P54707	1039 aa		4.01	□□□□□ -1.77
SS18-223	ENST00000583595	LIM2	P55344	173 aa		4.01	□□□□□ -1.77
SS18-223	ENST00000583595	PKNOX1	P55347	436 aa		4.01	□□□□□ -1.77
SS18-223	ENST00000583595	TAS2R60	P59551	318 aa		4.01	□□□□□ -1.77
SS18-223	ENST00000583595	PSME3	P61289	254 aa		4.01	□□□□□ -1.77
SS18-223	ENST00000583595	AP1S1	P61966	158 aa		4.01	□□□□□ -1.77
SS18-223	ENST00000583595	STX4	Q12846	297 aa		4.01	□□□□□ -1.77
SS18-223	ENST00000583595	ZNF154	Q13106	437 aa		4.01	□□□□□ -1.77

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