RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 PSMC3P17980 439 aa2.33□□□□□ -2.04
SMCHD1-209ENST00000583441 GGT1P19440 569 aa2.33□□□□□ -2.04
SMCHD1-209ENST00000583441 RAB3AP20336 220 aa2.33□□□□□ -2.04
SMCHD1-209ENST00000583441 GSTM3P21266 225 aa2.33□□□□□ -2.04
SMCHD1-209ENST00000583441 CEACAM3P40198 252 aa2.33□□□□□ -2.04
SMCHD1-209ENST00000583441 CRISP1P54107 249 aa2.33□□□□□ -2.04
SMCHD1-209ENST00000583441 UBE2NP61088 152 aaKnown RBP2.33□□□□□ -2.04
SMCHD1-209ENST00000583441 RAP1AP62834 184 aa2.33□□□□□ -2.04
SMCHD1-209ENST00000583441 MADCAM1Q13477 382 aa2.33□□□□□ -2.04
SMCHD1-209ENST00000583441 TFDP3Q5H9I0 405 aa2.33□□□□□ -2.04
SMCHD1-209ENST00000583441 TPTE2P1Q5T6R2 138 aa2.33□□□□□ -2.04
SMCHD1-209ENST00000583441 NPSR1Q6W5P4 371 aa2.33□□□□□ -2.04
SMCHD1-209ENST00000583441 MBOAT2Q6ZWT7 520 aa2.33□□□□□ -2.04
SMCHD1-209ENST00000583441 ABHD12BQ7Z5M8 362 aaPredicted RBP2.33□□□□□ -2.04
SMCHD1-209ENST00000583441 APH1BQ8WW43 257 aa2.33□□□□□ -2.04
SMCHD1-209ENST00000583441 FAM104AQ969W3 186 aa2.33□□□□□ -2.04
SMCHD1-209ENST00000583441 DCPSQ96C86 337 aaKnown RBP2.33□□□□□ -2.04
SMCHD1-209ENST00000583441 ZNF681Q96N22 645 aa2.33□□□□□ -2.04
SMCHD1-209ENST00000583441 NDFIP1Q9BT67 221 aa2.33□□□□□ -2.04
SMCHD1-209ENST00000583441 UCK2Q9BZX2 261 aa2.33□□□□□ -2.04
SMCHD1-209ENST00000583441 SAV1Q9H4B6 383 aaPredicted RBP2.33□□□□□ -2.04
SMCHD1-209ENST00000583441 CLSTN2Q9H4D0 955 aa2.33□□□□□ -2.04
SMCHD1-209ENST00000583441 TMEM9BQ9NQ34 198 aa2.33□□□□□ -2.04
SMCHD1-209ENST00000583441 CLN6Q9NWW5 311 aa2.33□□□□□ -2.04
SMCHD1-209ENST00000583441 PSME2Q9UL46 239 aa2.33□□□□□ -2.04
SMCHD1-209ENST00000583441 PSG11Q9UQ72 335 aa2.33□□□□□ -2.04
SMCHD1-209ENST00000583441 A0A1W2PP18 115 aa2.32□□□□□ -2.04
SMCHD1-209ENST00000583441 A0A1W2PRD5 423 aa2.32□□□□□ -2.04
SMCHD1-209ENST00000583441 HPRT1P00492 218 aa2.32□□□□□ -2.04
SMCHD1-209ENST00000583441 CISD3P0C7P0 127 aa2.32□□□□□ -2.04
SMCHD1-209ENST00000583441 ATF6P18850 670 aa2.32□□□□□ -2.04
SMCHD1-209ENST00000583441 U2AF2P26368 475 aaKnown RBP eCLIP2.32□□□□□ -2.041e-9■■■□□ 17.3
SMCHD1-209ENST00000583441 OR1E1P30953 314 aa2.32□□□□□ -2.04
SMCHD1-209ENST00000583441 RPS9P46781 194 aaKnown RBP2.32□□□□□ -2.04
SMCHD1-209ENST00000583441 P2RX1P51575 399 aa2.32□□□□□ -2.04
SMCHD1-209ENST00000583441 RND2P52198 227 aa2.32□□□□□ -2.04
SMCHD1-209ENST00000583441 CLDN18P56856 261 aa2.32□□□□□ -2.04
SMCHD1-209ENST00000583441 PPP1CBP62140 327 aa2.32□□□□□ -2.04
SMCHD1-209ENST00000583441 PON2Q15165 354 aa2.32□□□□□ -2.04
SMCHD1-209ENST00000583441 ORMDL2Q53FV1 153 aa2.32□□□□□ -2.04
SMCHD1-209ENST00000583441 GPR107Q5VW38 600 aa2.32□□□□□ -2.04
SMCHD1-209ENST00000583441 METTL21CQ5VZV1 264 aa2.32□□□□□ -2.04
SMCHD1-209ENST00000583441 FAM71E1Q6IPT2 247 aa2.32□□□□□ -2.04
SMCHD1-209ENST00000583441 CLEC2AQ6UVW9 174 aa2.32□□□□□ -2.04
SMCHD1-209ENST00000583441 FBXW12Q6X9E4 464 aa2.32□□□□□ -2.04
SMCHD1-209ENST00000583441 ZFP2Q6ZN57 461 aa2.32□□□□□ -2.04
SMCHD1-209ENST00000583441 TMCO2Q7Z6W1 182 aaPredicted RBP2.32□□□□□ -2.04
SMCHD1-209ENST00000583441 MRPL55Q7Z7F7 128 aaKnown RBP2.32□□□□□ -2.04
SMCHD1-209ENST00000583441 CBR4Q8N4T8 237 aa2.32□□□□□ -2.04
SMCHD1-209ENST00000583441 CYB561D1Q8N8Q1 229 aa2.32□□□□□ -2.04
SMCHD1-209ENST00000583441 C15orf56Q8N910 161 aa2.32□□□□□ -2.04
SMCHD1-209ENST00000583441 OR52E2Q8NGJ4 325 aa2.32□□□□□ -2.04
SMCHD1-209ENST00000583441 OR6Q1Q8NGQ2 317 aa2.32□□□□□ -2.04
SMCHD1-209ENST00000583441 OR2L8Q8NGY9 312 aa2.32□□□□□ -2.04
SMCHD1-209ENST00000583441 AGR3Q8TD06 166 aa2.32□□□□□ -2.04
SMCHD1-209ENST00000583441 GLYATL2Q8WU03 294 aa2.32□□□□□ -2.04
SMCHD1-209ENST00000583441 STARD4Q96DR4 205 aa2.32□□□□□ -2.04
SMCHD1-209ENST00000583441 PDXPQ96GD0 296 aa2.32□□□□□ -2.04
SMCHD1-209ENST00000583441 OPALINQ96PE5 141 aa2.32□□□□□ -2.04
SMCHD1-209ENST00000583441 CAMK2N2Q96S95 79 aa2.32□□□□□ -2.04
SMCHD1-209ENST00000583441 TEKT3Q9BXF9 490 aa2.32□□□□□ -2.04
SMCHD1-209ENST00000583441 TMEM38AQ9H6F2 299 aa2.32□□□□□ -2.04
SMCHD1-209ENST00000583441 UBE2ZQ9H832 354 aaPredicted RBP2.32□□□□□ -2.04
SMCHD1-209ENST00000583441 RETNQ9HD89 108 aa2.32□□□□□ -2.04
SMCHD1-209ENST00000583441 PTTG3PQ9NZH4 202 aa2.32□□□□□ -2.04
SMCHD1-209ENST00000583441 ZNF282Q9UDV7 671 aaPredicted RBP2.32□□□□□ -2.04
SMCHD1-209ENST00000583441 TMEM14AQ9Y6G1 99 aa2.32□□□□□ -2.04
SMCHD1-209ENST00000583441 MROH7-TTC4A0A0A0MT08 1334 aa2.32□□□□□ -2.04
SMCHD1-209ENST00000583441 IGLV4-60A0A075B6I1 120 aa2.31□□□□□ -2.04
SMCHD1-209ENST00000583441 IGLV1-36A0A0B4J1U3 117 aa2.31□□□□□ -2.04
SMCHD1-209ENST00000583441 A0A1B0GVX0 72 aa2.31□□□□□ -2.04
SMCHD1-209ENST00000583441 A0A1B0GW55 424 aa2.31□□□□□ -2.04
SMCHD1-209ENST00000583441 SUPT3HB4E1H0 165 aa2.31□□□□□ -2.04
SMCHD1-209ENST00000583441 K7EMT4 169 aa2.31□□□□□ -2.04
SMCHD1-209ENST00000583441 BET1O15155 118 aa2.31□□□□□ -2.04
SMCHD1-209ENST00000583441 B4GALT5O43286 388 aa2.31□□□□□ -2.04
SMCHD1-209ENST00000583441 FLOT1O75955 427 aa2.31□□□□□ -2.04
SMCHD1-209ENST00000583441 IGKV3-11P04433 115 aa2.31□□□□□ -2.04
SMCHD1-209ENST00000583441 CD3GP09693 182 aa2.31□□□□□ -2.04
SMCHD1-209ENST00000583441 TLX1NBP0CAT3 122 aa2.31□□□□□ -2.04
SMCHD1-209ENST00000583441 UBTFL6P0CB48 400 aaPredicted RBP2.31□□□□□ -2.04
SMCHD1-209ENST00000583441 DUX4L2P0CJ85 424 aa2.31□□□□□ -2.04
SMCHD1-209ENST00000583441 DUX4L3P0CJ86 424 aa2.31□□□□□ -2.04
SMCHD1-209ENST00000583441 DUX4L5P0CJ88 424 aa2.31□□□□□ -2.04
SMCHD1-209ENST00000583441 DUX4L6P0CJ89 424 aa2.31□□□□□ -2.04
SMCHD1-209ENST00000583441 DUX4L7P0CJ90 424 aa2.31□□□□□ -2.04
SMCHD1-209ENST00000583441 STAG3L3P0CL85 134 aa2.31□□□□□ -2.04
SMCHD1-209ENST00000583441 RALBP11234 206 aa2.31□□□□□ -2.04
SMCHD1-209ENST00000583441 ZNF823P16415 610 aa2.31□□□□□ -2.04
SMCHD1-209ENST00000583441 IGFBP3P17936 291 aaPredicted RBP2.31□□□□□ -2.04
SMCHD1-209ENST00000583441 PGAM1P18669 254 aa2.31□□□□□ -2.04
SMCHD1-209ENST00000583441 DTYMKP23919 212 aa2.31□□□□□ -2.04
SMCHD1-209ENST00000583441 HCAR3P49019 387 aa2.31□□□□□ -2.04
SMCHD1-209ENST00000583441 SYNJ2BPP57105 145 aa2.31□□□□□ -2.04
SMCHD1-209ENST00000583441 PRR3P79522 188 aaKnown RBP2.31□□□□□ -2.04
SMCHD1-209ENST00000583441 RAD51Q06609 339 aa2.31□□□□□ -2.04
SMCHD1-209ENST00000583441 SPAG1Q07617 926 aa2.31□□□□□ -2.04
SMCHD1-209ENST00000583441 ART3Q13508 389 aa2.31□□□□□ -2.04
SMCHD1-209ENST00000583441 ITIH4Q14624 930 aa2.31□□□□□ -2.04
SMCHD1-209ENST00000583441 RGNQ15493 299 aa2.31□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms