RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 CFAP77Q6ZQR2 320 aa9.39□□□□□ -0.91
SS18-213ENST00000579640 ALDH16A1Q8IZ83 802 aa9.39□□□□□ -0.91
SS18-213ENST00000579640 RFLNBQ8N5W9 214 aa9.39□□□□□ -0.91
SS18-213ENST00000579640 RORBQ92753 470 aa9.39□□□□□ -0.91
SS18-213ENST00000579640 OR2H1Q9GZK4 316 aa9.39□□□□□ -0.91
SS18-213ENST00000579640 NIPAL2Q9H841 368 aa9.39□□□□□ -0.91
SS18-213ENST00000579640 RNF121Q9H920 327 aa9.39□□□□□ -0.91
SS18-213ENST00000579640 ISYNA1Q9NPH2 558 aa9.39□□□□□ -0.91
SS18-213ENST00000579640 DDX28Q9NUL7 540 aaKnown RBP9.39□□□□□ -0.91
SS18-213ENST00000579640 PLEK2Q9NYT0 353 aa9.39□□□□□ -0.91
SS18-213ENST00000579640 ZNF224Q9NZL3 707 aa9.39□□□□□ -0.91
SS18-213ENST00000579640 ATPIF1Q9UII2 106 aa9.39□□□□□ -0.91
SS18-213ENST00000579640 IKZF2Q9UKS7 526 aa9.39□□□□□ -0.91
SS18-213ENST00000579640 FBXL3Q9UKT7 428 aa9.39□□□□□ -0.91
SS18-213ENST00000579640 SLC5A6Q9Y289 635 aa9.39□□□□□ -0.91
SS18-213ENST00000579640 AMDHD2Q9Y303 409 aa9.39□□□□□ -0.91
SS18-213ENST00000579640 LSM2Q9Y333 95 aaKnown RBP9.39□□□□□ -0.91
SS18-213ENST00000579640 OR5H1A6NKK0 313 aa9.38□□□□□ -0.91
SS18-213ENST00000579640 WNT11O96014 354 aa9.38□□□□□ -0.91
SS18-213ENST00000579640 HLA-HP01893 362 aa9.38□□□□□ -0.91
SS18-213ENST00000579640 H2BFMP0C1H6 154 aa9.38□□□□□ -0.91
SS18-213ENST00000579640 CD79AP11912 226 aa9.38□□□□□ -0.91
SS18-213ENST00000579640 DCTDP32321 178 aa9.38□□□□□ -0.91
SS18-213ENST00000579640 OPRL1P41146 370 aa9.38□□□□□ -0.91
SS18-213ENST00000579640 RIDAP52758 137 aaKnown RBP9.38□□□□□ -0.91
SS18-213ENST00000579640 NR1H2P55055 460 aa9.38□□□□□ -0.91
SS18-213ENST00000579640 GRB2P62993 217 aaKnown RBP9.38□□□□□ -0.91
SS18-213ENST00000579640 BDH1Q02338 343 aa9.38□□□□□ -0.91
SS18-213ENST00000579640 ACSM1Q08AH1 577 aa9.38□□□□□ -0.91
SS18-213ENST00000579640 SPHARQ15513 63 aa9.38□□□□□ -0.91
SS18-213ENST00000579640 MED22Q15528 200 aa9.38□□□□□ -0.91
SS18-213ENST00000579640 GSG1Q2KHT4 349 aa9.38□□□□□ -0.91
SS18-213ENST00000579640 CCDC92Q53HC0 331 aaPredicted RBP9.38□□□□□ -0.91
SS18-213ENST00000579640 TIMM23BQ5SRD1 257 aa9.38□□□□□ -0.91
SS18-213ENST00000579640 OR2G6Q5TZ20 316 aa9.38□□□□□ -0.91
SS18-213ENST00000579640 XAF1Q6GPH4 301 aa9.38□□□□□ -0.91
SS18-213ENST00000579640 HIST2H2ABQ8IUE6 130 aaPredicted RBP9.38□□□□□ -0.91
SS18-213ENST00000579640 ZNF485Q8NCK3 441 aa9.38□□□□□ -0.91
SS18-213ENST00000579640 CA5BP1Q8WTZ4 195 aa9.38□□□□□ -0.91
SS18-213ENST00000579640 SPRYD4Q8WW59 207 aaPredicted RBP9.38□□□□□ -0.91
SS18-213ENST00000579640 C4orf36Q96KX1 117 aa9.38□□□□□ -0.91
SS18-213ENST00000579640 AMELYQ99218 206 aa9.38□□□□□ -0.91
SS18-213ENST00000579640 COQ7Q99807 217 aa9.38□□□□□ -0.91
SS18-213ENST00000579640 ATF6BQ99941 703 aa9.38□□□□□ -0.91
SS18-213ENST00000579640 ELOVL3Q9HB03 270 aa9.38□□□□□ -0.91
SS18-213ENST00000579640 PNRC2Q9NPJ4 139 aaKnown RBP9.38□□□□□ -0.91
SS18-213ENST00000579640 TRIM36Q9NQ86 728 aa9.38□□□□□ -0.91
SS18-213ENST00000579640 CENPMQ9NSP4 180 aa9.38□□□□□ -0.91
SS18-213ENST00000579640 BABAM2Q9NXR7 383 aa9.38□□□□□ -0.91
SS18-213ENST00000579640 B3GNT2Q9NY97 397 aa9.38□□□□□ -0.91
SS18-213ENST00000579640 SLCO1C1Q9NYB5 712 aa9.38□□□□□ -0.91
SS18-213ENST00000579640 MRM2Q9UI43 246 aaKnown RBP9.38□□□□□ -0.91
SS18-213ENST00000579640 GNG8Q9UK08 70 aa9.38□□□□□ -0.91
SS18-213ENST00000579640 PRR32B1ATL7 298 aa9.38□□□□□ -0.91
SS18-213ENST00000579640 C16orf97H3BN30 126 aa9.38□□□□□ -0.91
SS18-213ENST00000579640 J3QLW9 94 aa9.38□□□□□ -0.91
SS18-213ENST00000579640 DOK2O60496 412 aa9.38□□□□□ -0.91
SS18-213ENST00000579640 ABHD16AO95870 558 aa9.38□□□□□ -0.91
SS18-213ENST00000579640 APOC1P02654 83 aa9.38□□□□□ -0.91
SS18-213ENST00000579640 COX5BP10606 129 aa9.38□□□□□ -0.91
SS18-213ENST00000579640 ZNF19P17023 458 aa9.38□□□□□ -0.91
SS18-213ENST00000579640 GBX2P52951 348 aaPredicted RBP9.38□□□□□ -0.91
SS18-213ENST00000579640 OR12D2P58182 307 aa9.38□□□□□ -0.91
SS18-213ENST00000579640 TAS2R43P59537 309 aa9.38□□□□□ -0.91
SS18-213ENST00000579640 RAB1AP62820 205 aa9.38□□□□□ -0.91
SS18-213ENST00000579640 PSG4Q00888 419 aa9.38□□□□□ -0.91
SS18-213ENST00000579640 PLP2Q04941 152 aa9.38□□□□□ -0.91
SS18-213ENST00000579640 TAF13Q15543 124 aa9.38□□□□□ -0.91
SS18-213ENST00000579640 NEDD8Q15843 81 aa9.38□□□□□ -0.91
SS18-213ENST00000579640 TP53I3Q53FA7 332 aa9.38□□□□□ -0.91
SS18-213ENST00000579640 SYT6Q5T7P8 510 aaPredicted RBP9.38□□□□□ -0.91
SS18-213ENST00000579640 XKRXQ6PP77 449 aa9.38□□□□□ -0.91
SS18-213ENST00000579640 LRRN1Q6UXK5 716 aa9.38□□□□□ -0.91
SS18-213ENST00000579640 VASH1Q7L8A9 365 aaPredicted RBP9.38□□□□□ -0.91
SS18-213ENST00000579640 YIPF7Q8N8F6 280 aa9.38□□□□□ -0.91
SS18-213ENST00000579640 OR10S1Q8NGN2 331 aa9.38□□□□□ -0.91
SS18-213ENST00000579640 FGFBP3Q8TAT2 258 aa9.38□□□□□ -0.91
SS18-213ENST00000579640 GATAD2BQ8WXI9 593 aa9.38□□□□□ -0.91
SS18-213ENST00000579640 RNASE6Q93091 150 aaKnown RBP9.38□□□□□ -0.91
SS18-213ENST00000579640 MUL1Q969V5 352 aa9.38□□□□□ -0.91
SS18-213ENST00000579640 COG8Q96MW5 612 aa9.38□□□□□ -0.91
SS18-213ENST00000579640 TTTY10Q9BZA0 68 aa9.38□□□□□ -0.91
SS18-213ENST00000579640 WNT5BQ9H1J7 359 aa9.38□□□□□ -0.91
SS18-213ENST00000579640 NBASA2RRP1 2371 aa9.37□□□□□ -0.91
SS18-213ENST00000579640 IQCMA0A1B0GVH7 501 aa9.37□□□□□ -0.91
SS18-213ENST00000579640 OR6C6A6NF89 314 aa9.37□□□□□ -0.91
SS18-213ENST00000579640 SYNGR3O43761 229 aa9.37□□□□□ -0.91
SS18-213ENST00000579640 LCKP06239 509 aa9.37□□□□□ -0.91
SS18-213ENST00000579640 PATE4P0C8F1 98 aa9.37□□□□□ -0.91
SS18-213ENST00000579640 CBR1P16152 277 aa9.37□□□□□ -0.91
SS18-213ENST00000579640 PPP3CBP16298 524 aa9.37□□□□□ -0.91
SS18-213ENST00000579640 HSD11B1P28845 292 aa9.37□□□□□ -0.91
SS18-213ENST00000579640 UGT2B10P36537 528 aa9.37□□□□□ -0.91
SS18-213ENST00000579640 RPL5P46777 297 aaKnown RBP9.37□□□□□ -0.91
SS18-213ENST00000579640 FAM27E3Q08E93 113 aa9.37□□□□□ -0.91
SS18-213ENST00000579640 MLLT11Q13015 90 aaPredicted RBP9.37□□□□□ -0.91
SS18-213ENST00000579640 TSC22D1Q15714 1073 aa9.37□□□□□ -0.91
SS18-213ENST00000579640 ZNF829Q3KNS6 432 aaPredicted RBP9.37□□□□□ -0.91
SS18-213ENST00000579640 CCDC58Q4VC31 144 aa9.37□□□□□ -0.91
SS18-213ENST00000579640 PABPC1L2AQ5JQF8 200 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms