RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 JAGN1Q8N5M9 183 aa20.35■□□□□ 0.85
VPS53-211ENST00000571805 THAP3Q8WTV1 239 aaPredicted RBP20.35■□□□□ 0.85
VPS53-211ENST00000571805 TINAGL1Q9GZM7 467 aaPredicted RBP20.35■□□□□ 0.85
VPS53-211ENST00000571805 ZNF768Q9H5H4 540 aaKnown RBP20.35■□□□□ 0.85
VPS53-211ENST00000571805 MYEF2Q9P2K5 600 aaKnown RBP20.35■□□□□ 0.85
VPS53-211ENST00000571805 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa20.35■□□□□ 0.85
VPS53-211ENST00000571805 HSF1Q00613 529 aa20.35■□□□□ 0.85
VPS53-211ENST00000571805 POU3F1Q03052 451 aaPredicted RBP20.35■□□□□ 0.85
VPS53-211ENST00000571805 PMPCAQ10713 525 aa20.35■□□□□ 0.85
VPS53-211ENST00000571805 CORO6Q6QEF8 472 aa20.35■□□□□ 0.85
VPS53-211ENST00000571805 TSSK4Q6SA08 328 aa20.35■□□□□ 0.85
VPS53-211ENST00000571805 ANKRD37Q7Z713 158 aa20.35■□□□□ 0.85
VPS53-211ENST00000571805 CDH26Q8IXH8 852 aa20.35■□□□□ 0.85
VPS53-211ENST00000571805 TNFAIP8L1Q8WVP5 186 aa20.35■□□□□ 0.85
VPS53-211ENST00000571805 TMEM138Q9NPI0 162 aa20.35■□□□□ 0.85
VPS53-211ENST00000571805 A0A0A6YYH2 397 aa20.34■□□□□ 0.85
VPS53-211ENST00000571805 A6NJ64 397 aa20.34■□□□□ 0.85
VPS53-211ENST00000571805 M0QYG6 137 aa20.34■□□□□ 0.85
VPS53-211ENST00000571805 ZNF735P0CB33 412 aa20.34■□□□□ 0.85
VPS53-211ENST00000571805 TMEM244Q5VVB8 128 aa20.34■□□□□ 0.85
VPS53-211ENST00000571805 OR4D6Q8NGJ1 314 aa20.34■□□□□ 0.85
VPS53-211ENST00000571805 RNF133Q8WVZ7 376 aa20.34■□□□□ 0.85
VPS53-211ENST00000571805 PTX4Q96A99 478 aa20.34■□□□□ 0.85
VPS53-211ENST00000571805 POTEKPQ9BYX7 375 aa20.34■□□□□ 0.85
VPS53-211ENST00000571805 SLCO5A1Q9H2Y9 848 aa20.34■□□□□ 0.85
VPS53-211ENST00000571805 CHST11Q9NPF2 352 aa20.34■□□□□ 0.85
VPS53-211ENST00000571805 NUP50Q9UKX7 468 aa20.34■□□□□ 0.85
VPS53-211ENST00000571805 VDAC3Q9Y277 283 aa20.34■□□□□ 0.85
VPS53-211ENST00000571805 HRH3Q9Y5N1 445 aa20.34■□□□□ 0.85
VPS53-211ENST00000571805 P2RY10O00398 339 aa20.34■□□□□ 0.85
VPS53-211ENST00000571805 ZNF208O43345 1280 aa20.34■□□□□ 0.85
VPS53-211ENST00000571805 SUMO3P55854 103 aaPredicted RBP20.34■□□□□ 0.85
VPS53-211ENST00000571805 TLE3Q04726 772 aa20.34■□□□□ 0.85
VPS53-211ENST00000571805 RHBDD2Q6NTF9 364 aa20.34■□□□□ 0.85
VPS53-211ENST00000571805 SLC38A9Q8NBW4 561 aa20.34■□□□□ 0.85
VPS53-211ENST00000571805 FOXQ1Q9C009 403 aa20.34■□□□□ 0.85
VPS53-211ENST00000571805 ZMAT3Q9HA38 289 aaKnown RBP20.34■□□□□ 0.85
VPS53-211ENST00000571805 UPB1Q9UBR1 384 aa20.34■□□□□ 0.85
VPS53-211ENST00000571805 IGLV3-12A0A075B6K2 115 aa20.33■□□□□ 0.85
VPS53-211ENST00000571805 H3BUI4 141 aa20.33■□□□□ 0.85
VPS53-211ENST00000571805 ALOX12BO75342 701 aa20.33■□□□□ 0.85
VPS53-211ENST00000571805 SCO1O75880 301 aa20.33■□□□□ 0.85
VPS53-211ENST00000571805 PMS2P2O95744 297 aa20.33■□□□□ 0.85
VPS53-211ENST00000571805 CD74P04233 296 aa20.33■□□□□ 0.85
VPS53-211ENST00000571805 OR4E1P0C645 316 aa20.33■□□□□ 0.85
VPS53-211ENST00000571805 MMP16P51512 607 aa20.33■□□□□ 0.85
VPS53-211ENST00000571805 B3GNTL1Q67FW5 361 aaPredicted RBP20.33■□□□□ 0.85
VPS53-211ENST00000571805 HDDC2Q7Z4H3 204 aa20.33■□□□□ 0.85
VPS53-211ENST00000571805 RBPMSQ93062 196 aaKnown RBP20.33■□□□□ 0.85
VPS53-211ENST00000571805 PMEPA1Q969W9 287 aa20.33■□□□□ 0.85
VPS53-211ENST00000571805 CCDC120Q96HB5 630 aa20.33■□□□□ 0.85
VPS53-211ENST00000571805 SLC25A21Q9BQT8 299 aaPredicted RBP20.33■□□□□ 0.85
VPS53-211ENST00000571805 REG4Q9BYZ8 158 aa20.33■□□□□ 0.85
VPS53-211ENST00000571805 RDH8Q9NYR8 311 aa20.33■□□□□ 0.85
VPS53-211ENST00000571805 FXYD6-FXYD2A0A087WZ82 144 aa20.32■□□□□ 0.84
VPS53-211ENST00000571805 TMEM82A0PJX8 343 aa20.32■□□□□ 0.84
VPS53-211ENST00000571805 WIPF3A6NGB9 483 aa20.32■□□□□ 0.84
VPS53-211ENST00000571805 TMEM200CA6NKL6 621 aa20.32■□□□□ 0.84
VPS53-211ENST00000571805 B3GALNT1O75752 331 aa20.32■□□□□ 0.84
VPS53-211ENST00000571805 UBCP0CG48 685 aaKnown RBP20.32■□□□□ 0.84
VPS53-211ENST00000571805 FOSL2P15408 326 aa20.32■□□□□ 0.84
VPS53-211ENST00000571805 BCKDHBP21953 392 aa20.32■□□□□ 0.84
VPS53-211ENST00000571805 FOXF1Q12946 379 aa20.32■□□□□ 0.84
VPS53-211ENST00000571805 NR0B2Q15466 257 aa20.32■□□□□ 0.84
VPS53-211ENST00000571805 FXYD6Q9H0Q3 95 aa20.32■□□□□ 0.84
VPS53-211ENST00000571805 CENPMQ9NSP4 180 aa20.32■□□□□ 0.84
VPS53-211ENST00000571805 EFNA2O43921 213 aa20.32■□□□□ 0.84
VPS53-211ENST00000571805 H2BFMP0C1H6 154 aa20.32■□□□□ 0.84
VPS53-211ENST00000571805 SMAD4Q13485 552 aaKnown RBP20.32■□□□□ 0.84
VPS53-211ENST00000571805 TMEM65Q6PI78 240 aa20.32■□□□□ 0.84
VPS53-211ENST00000571805 TMPRSS9Q7Z410 1059 aa20.32■□□□□ 0.84
VPS53-211ENST00000571805 NKAIN3Q8N8D7 197 aa20.32■□□□□ 0.84
VPS53-211ENST00000571805 NUBPLQ8TB37 319 aa20.32■□□□□ 0.84
VPS53-211ENST00000571805 RNF138Q8WVD3 245 aa20.32■□□□□ 0.84
VPS53-211ENST00000571805 DDIT4LQ96D03 193 aa20.32■□□□□ 0.84
VPS53-211ENST00000571805 MYOZ1Q9NP98 299 aaPredicted RBP20.32■□□□□ 0.84
VPS53-211ENST00000571805 FAM206AQ9NX38 181 aa20.32■□□□□ 0.84
VPS53-211ENST00000571805 ZNF224Q9NZL3 707 aa20.32■□□□□ 0.84
VPS53-211ENST00000571805 KCNN3Q9UGI6 736 aa20.32■□□□□ 0.84
VPS53-211ENST00000571805 ZNF107Q9UII5 783 aaPredicted RBP20.32■□□□□ 0.84
VPS53-211ENST00000571805 KLK13Q9UKR3 277 aa20.32■□□□□ 0.84
VPS53-211ENST00000571805 SRPK3Q9UPE1 567 aa20.32■□□□□ 0.84
VPS53-211ENST00000571805 CABIN1Q9Y6J0 2220 aa20.32■□□□□ 0.84
VPS53-211ENST00000571805 LIPT2A6NK58 231 aa20.31■□□□□ 0.84
VPS53-211ENST00000571805 SHISA8B8ZZ34 492 aa20.31■□□□□ 0.84
VPS53-211ENST00000571805 AMY2AP04746 511 aa20.31■□□□□ 0.84
VPS53-211ENST00000571805 ACSM4P0C7M7 580 aa20.31■□□□□ 0.84
VPS53-211ENST00000571805 PPP3CBP16298 524 aa20.31■□□□□ 0.84
VPS53-211ENST00000571805 IGFBP4P22692 258 aa20.31■□□□□ 0.84
VPS53-211ENST00000571805 CALCRP30988 508 aa20.31■□□□□ 0.84
VPS53-211ENST00000571805 ZNF813Q6ZN06 617 aa20.31■□□□□ 0.84
VPS53-211ENST00000571805 HIST2H2ABQ8IUE6 130 aaPredicted RBP20.31■□□□□ 0.84
VPS53-211ENST00000571805 CCDC107Q8WV48 283 aa20.31■□□□□ 0.84
VPS53-211ENST00000571805 ASB13Q8WXK3 278 aa20.31■□□□□ 0.84
VPS53-211ENST00000571805 EDEM2Q9BV94 578 aa20.31■□□□□ 0.84
VPS53-211ENST00000571805 FANCFQ9NPI8 374 aa20.31■□□□□ 0.84
VPS53-211ENST00000571805 GDF2Q9UK05 429 aaPredicted RBP20.31■□□□□ 0.84
VPS53-211ENST00000571805 SDK1Q7Z5N4 2213 aa20.31■□□□□ 0.84
VPS53-211ENST00000571805 ETV2O00321 342 aaPredicted RBP20.31■□□□□ 0.84
VPS53-211ENST00000571805 RP2O75695 350 aa20.31■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms