RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 OTOSQ8NHW6 89 aa11.9□□□□□ -0.5
VPS4A-204ENST00000566354 ATOH1Q92858 354 aaPredicted RBP11.9□□□□□ -0.5
VPS4A-204ENST00000566354 NAT6Q93015 286 aa11.9□□□□□ -0.5
VPS4A-204ENST00000566354 ZNF416Q9BWM5 594 aa11.9□□□□□ -0.5
VPS4A-204ENST00000566354 SYT4Q9H2B2 425 aa11.9□□□□□ -0.5
VPS4A-204ENST00000566354 C1orf198Q9H425 327 aa11.9□□□□□ -0.5
VPS4A-204ENST00000566354 PLCL2Q9UPR0 1127 aa11.9□□□□□ -0.5
VPS4A-204ENST00000566354 NUP210LQ5VU65 1888 aa11.9□□□□□ -0.5
VPS4A-204ENST00000566354 MPDZO75970 2070 aa11.9□□□□□ -0.5
VPS4A-204ENST00000566354 CFAP54Q96N23 3096 aa11.9□□□□□ -0.51
VPS4A-204ENST00000566354 RFPL4AA6NLU0 287 aa11.89□□□□□ -0.51
VPS4A-204ENST00000566354 RFPL4AL1F8VTS6 287 aa11.89□□□□□ -0.51
VPS4A-204ENST00000566354 SULT1C2O00338 296 aa11.89□□□□□ -0.51
VPS4A-204ENST00000566354 SCDO00767 359 aa11.89□□□□□ -0.51
VPS4A-204ENST00000566354 ZNF264O43296 627 aa11.89□□□□□ -0.51
VPS4A-204ENST00000566354 OIP5O43482 229 aa11.89□□□□□ -0.51
VPS4A-204ENST00000566354 PMS2P2O95744 297 aa11.89□□□□□ -0.51
VPS4A-204ENST00000566354 ITGB2P05107 769 aa11.89□□□□□ -0.51
VPS4A-204ENST00000566354 CCKBRP32239 447 aa11.89□□□□□ -0.51
VPS4A-204ENST00000566354 HSD11B2P80365 405 aa11.89□□□□□ -0.51
VPS4A-204ENST00000566354 TCF15Q12870 199 aa11.89□□□□□ -0.51
VPS4A-204ENST00000566354 WDR38Q5JTN6 314 aa11.89□□□□□ -0.51
VPS4A-204ENST00000566354 ZNF454Q8N9F8 522 aa11.89□□□□□ -0.51
VPS4A-204ENST00000566354 OR1S1Q8NH92 325 aa11.89□□□□□ -0.51
VPS4A-204ENST00000566354 GPX8Q8TED1 209 aa11.89□□□□□ -0.51
VPS4A-204ENST00000566354 FBXW5Q969U6 566 aa11.89□□□□□ -0.51
VPS4A-204ENST00000566354 KTI12Q96EK9 354 aaPredicted RBP11.89□□□□□ -0.51
VPS4A-204ENST00000566354 WNT5BQ9H1J7 359 aa11.89□□□□□ -0.51
VPS4A-204ENST00000566354 LDAHQ9H6V9 325 aa11.89□□□□□ -0.51
VPS4A-204ENST00000566354 TMEM272A0A1B0GTI8 110 aa11.89□□□□□ -0.51
VPS4A-204ENST00000566354 D6RAR5 112 aa11.89□□□□□ -0.51
VPS4A-204ENST00000566354 LINC01387J3KSC0 135 aa11.89□□□□□ -0.51
VPS4A-204ENST00000566354 CDX4O14627 284 aaPredicted RBP11.89□□□□□ -0.51
VPS4A-204ENST00000566354 KDM4BO94953 1096 aa11.89□□□□□ -0.51
VPS4A-204ENST00000566354 WNT11O96014 354 aa11.89□□□□□ -0.51
VPS4A-204ENST00000566354 FOLR1P15328 257 aa11.89□□□□□ -0.51
VPS4A-204ENST00000566354 MAOAP21397 527 aa11.89□□□□□ -0.51
VPS4A-204ENST00000566354 MST1P26927 711 aa11.89□□□□□ -0.51
VPS4A-204ENST00000566354 MPGP29372 298 aa11.89□□□□□ -0.51
VPS4A-204ENST00000566354 RPS27P42677 84 aaKnown RBP11.89□□□□□ -0.51
VPS4A-204ENST00000566354 ARL4DP49703 201 aa11.89□□□□□ -0.51
VPS4A-204ENST00000566354 TAS2R19P59542 299 aa11.89□□□□□ -0.51
VPS4A-204ENST00000566354 TEX30Q5JUR7 227 aa11.89□□□□□ -0.51
VPS4A-204ENST00000566354 FAM166AQ6J272 317 aa11.89□□□□□ -0.51
VPS4A-204ENST00000566354 TMEM71Q6P5X7 295 aa11.89□□□□□ -0.51
VPS4A-204ENST00000566354 BIVMQ86UB2 503 aa11.89□□□□□ -0.51
VPS4A-204ENST00000566354 OR8S1Q8NH09 359 aa11.89□□□□□ -0.51
VPS4A-204ENST00000566354 ASB17Q8WXJ9 295 aa11.89□□□□□ -0.51
VPS4A-204ENST00000566354 SLC41A2Q96JW4 573 aa11.89□□□□□ -0.51
VPS4A-204ENST00000566354 ZNF285Q96NJ3 590 aa11.89□□□□□ -0.51
VPS4A-204ENST00000566354 OR8B4Q96RC9 309 aa11.89□□□□□ -0.51
VPS4A-204ENST00000566354 UCN2Q96RP3 112 aa11.89□□□□□ -0.51
VPS4A-204ENST00000566354 SLC25A21Q9BQT8 299 aaPredicted RBP11.89□□□□□ -0.51
VPS4A-204ENST00000566354 POTEKPQ9BYX7 375 aa11.89□□□□□ -0.51
VPS4A-204ENST00000566354 CHST6Q9GZX3 395 aa11.89□□□□□ -0.51
VPS4A-204ENST00000566354 ATG5Q9H1Y0 275 aa11.89□□□□□ -0.51
VPS4A-204ENST00000566354 ELOVL3Q9HB03 270 aa11.89□□□□□ -0.51
VPS4A-204ENST00000566354 SEMA5BQ9P283 1151 aa11.89□□□□□ -0.51
VPS4A-204ENST00000566354 ADAMTS20P59510 1910 aa11.89□□□□□ -0.51
VPS4A-204ENST00000566354 WDFY3Q8IZQ1 3526 aa11.89□□□□□ -0.51
VPS4A-204ENST00000566354 A0A1B0GW55 424 aa11.88□□□□□ -0.51
VPS4A-204ENST00000566354 MEIS3P1A6NDR6 274 aa11.88□□□□□ -0.51
VPS4A-204ENST00000566354 OR2W5A6NFC9 320 aa11.88□□□□□ -0.51
VPS4A-204ENST00000566354 H3BSH0 61 aa11.88□□□□□ -0.51
VPS4A-204ENST00000566354 LGALS8O00214 317 aa11.88□□□□□ -0.51
VPS4A-204ENST00000566354 WRBO00258 174 aa11.88□□□□□ -0.51
VPS4A-204ENST00000566354 IL33O95760 270 aa11.88□□□□□ -0.51
VPS4A-204ENST00000566354 ZNF883P0CG24 379 aa11.88□□□□□ -0.51
VPS4A-204ENST00000566354 DUX4L2P0CJ85 424 aa11.88□□□□□ -0.51
VPS4A-204ENST00000566354 DUX4L3P0CJ86 424 aa11.88□□□□□ -0.51
VPS4A-204ENST00000566354 DUX4L4P0CJ87 422 aa11.88□□□□□ -0.51
VPS4A-204ENST00000566354 DUX4L5P0CJ88 424 aa11.88□□□□□ -0.51
VPS4A-204ENST00000566354 DUX4L6P0CJ89 424 aa11.88□□□□□ -0.51
VPS4A-204ENST00000566354 DUX4L7P0CJ90 424 aa11.88□□□□□ -0.51
VPS4A-204ENST00000566354 AGTR1P30556 359 aa11.88□□□□□ -0.51
VPS4A-204ENST00000566354 GALNSP34059 522 aa11.88□□□□□ -0.51
VPS4A-204ENST00000566354 SORDQ00796 357 aa11.88□□□□□ -0.51
VPS4A-204ENST00000566354 SPEM2Q0P670 501 aa11.88□□□□□ -0.51
VPS4A-204ENST00000566354 SSPNQ14714 243 aa11.88□□□□□ -0.51
VPS4A-204ENST00000566354 SLC17A1Q14916 467 aa11.88□□□□□ -0.51
VPS4A-204ENST00000566354 ARHGAP40Q5TG30 622 aa11.88□□□□□ -0.51
VPS4A-204ENST00000566354 GABRG1Q8N1C3 465 aa11.88□□□□□ -0.51
VPS4A-204ENST00000566354 D2HGDHQ8N465 521 aa11.88□□□□□ -0.51
VPS4A-204ENST00000566354 ZSCAN1Q8NBB4 408 aa11.88□□□□□ -0.51
VPS4A-204ENST00000566354 PRSS33Q8NF86 280 aa11.88□□□□□ -0.51
VPS4A-204ENST00000566354 TAAR8Q969N4 342 aa11.88□□□□□ -0.51
VPS4A-204ENST00000566354 LMF1Q96S06 567 aa11.88□□□□□ -0.51
VPS4A-204ENST00000566354 AMELYQ99218 206 aa11.88□□□□□ -0.51
VPS4A-204ENST00000566354 CHRNA10Q9GZZ6 450 aa11.88□□□□□ -0.51
VPS4A-204ENST00000566354 SLC25A32Q9H2D1 315 aa11.88□□□□□ -0.51
VPS4A-204ENST00000566354 DUX4Q9UBX2 424 aa11.88□□□□□ -0.51
VPS4A-204ENST00000566354 KCNG2Q9UJ96 466 aa11.88□□□□□ -0.51
VPS4A-204ENST00000566354 TMEM150CB9EJG8 249 aa11.88□□□□□ -0.51
VPS4A-204ENST00000566354 XKRYO14609 159 aa11.88□□□□□ -0.51
VPS4A-204ENST00000566354 ABCD4O14678 606 aa11.88□□□□□ -0.51
VPS4A-204ENST00000566354 NSA2O95478 260 aaKnown RBP11.88□□□□□ -0.51
VPS4A-204ENST00000566354 HPP00738 406 aa11.88□□□□□ -0.51
VPS4A-204ENST00000566354 CLPSP04118 112 aa11.88□□□□□ -0.51
VPS4A-204ENST00000566354 ZNF806P0C7X5 589 aa11.88□□□□□ -0.51
VPS4A-204ENST00000566354 TACR3P29371 465 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms