RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 USE1Q9NZ43 259 aa14.91□□□□□ -0.02
CLN3-217ENST00000565354 NDRG4Q9ULP0 352 aaKnown RBP14.91□□□□□ -0.02
CLN3-217ENST00000565354 LAMP3Q9UQV4 416 aa14.91□□□□□ -0.02
CLN3-217ENST00000565354 CR1P17927 2039 aa14.9□□□□□ -0.02
CLN3-217ENST00000565354 SGCEO43556 437 aa14.9□□□□□ -0.02
CLN3-217ENST00000565354 TMCC2O75069 709 aa14.9□□□□□ -0.02
CLN3-217ENST00000565354 CLUP10909 449 aa14.9□□□□□ -0.02
CLN3-217ENST00000565354 CCL2P13500 99 aa14.9□□□□□ -0.02
CLN3-217ENST00000565354 HTR5AP47898 357 aa14.9□□□□□ -0.02
CLN3-217ENST00000565354 AGAP6Q5VW22 663 aa14.9□□□□□ -0.02
CLN3-217ENST00000565354 ZNF544Q6NX49 715 aa14.9□□□□□ -0.02
CLN3-217ENST00000565354 CPOQ8IVL8 374 aa14.9□□□□□ -0.02
CLN3-217ENST00000565354 GJC3Q8NFK1 279 aa14.9□□□□□ -0.02
CLN3-217ENST00000565354 GABARAPL3Q9BY60 117 aa14.9□□□□□ -0.02
CLN3-217ENST00000565354 NMNAT2Q9BZQ4 307 aa14.9□□□□□ -0.02
CLN3-217ENST00000565354 CA10Q9NS85 328 aa14.9□□□□□ -0.02
CLN3-217ENST00000565354 ZNF701Q9NV72 531 aaPredicted RBP14.9□□□□□ -0.02
CLN3-217ENST00000565354 EIF3KQ9UBQ5 218 aaKnown RBP14.9□□□□□ -0.02
CLN3-217ENST00000565354 KCNG2Q9UJ96 466 aa14.9□□□□□ -0.02
CLN3-217ENST00000565354 HEATR1Q9H583 2144 aaKnown RBP14.9□□□□□ -0.02
CLN3-217ENST00000565354 ZAR1LA6NP61 321 aa14.89□□□□□ -0.03
CLN3-217ENST00000565354 H0YHG0 523 aa14.89□□□□□ -0.03
CLN3-217ENST00000565354 TFP02787 698 aa14.89□□□□□ -0.03
CLN3-217ENST00000565354 ALPLP05186 524 aa14.89□□□□□ -0.03
CLN3-217ENST00000565354 ZNF35P13682 527 aa14.89□□□□□ -0.03
CLN3-217ENST00000565354 ANPEPP15144 967 aa14.89□□□□□ -0.03
CLN3-217ENST00000565354 APOBEC3AP31941 199 aaPredicted RBP14.89□□□□□ -0.03
CLN3-217ENST00000565354 RPS23P62266 143 aaKnown RBP14.89□□□□□ -0.03
CLN3-217ENST00000565354 TNK1Q13470 666 aa14.89□□□□□ -0.03
CLN3-217ENST00000565354 TRIP10Q15642 601 aa14.89□□□□□ -0.03
CLN3-217ENST00000565354 ZIK1Q3SY52 487 aaPredicted RBP14.89□□□□□ -0.03
CLN3-217ENST00000565354 SLX4IPQ5VYV7 408 aa14.89□□□□□ -0.03
CLN3-217ENST00000565354 ZNF771Q7L3S4 317 aaPredicted RBP14.89□□□□□ -0.03
CLN3-217ENST00000565354 LINC00346Q8IVM7 164 aa14.89□□□□□ -0.03
CLN3-217ENST00000565354 MUC15Q8N387 334 aa14.89□□□□□ -0.03
CLN3-217ENST00000565354 CPEB3Q8NE35 698 aaKnown RBP14.89□□□□□ -0.03
CLN3-217ENST00000565354 NUP37Q8NFH4 326 aa14.89□□□□□ -0.03
CLN3-217ENST00000565354 GRIP2Q9C0E4 1043 aa14.89□□□□□ -0.03
CLN3-217ENST00000565354 OR51B6Q9H340 312 aa14.89□□□□□ -0.03
CLN3-217ENST00000565354 CXorf56Q9H5V9 222 aa14.89□□□□□ -0.03
CLN3-217ENST00000565354 HINT3Q9NQE9 182 aaKnown RBP14.89□□□□□ -0.03
CLN3-217ENST00000565354 H2AFY2Q9P0M6 372 aaPredicted RBP14.89□□□□□ -0.03
CLN3-217ENST00000565354 C5orf49A4QMS7 147 aa14.88□□□□□ -0.03
CLN3-217ENST00000565354 RER1O15258 196 aa14.88□□□□□ -0.03
CLN3-217ENST00000565354 GLCEO94923 617 aa14.88□□□□□ -0.03
CLN3-217ENST00000565354 IFNA2P01563 188 aa14.88□□□□□ -0.03
CLN3-217ENST00000565354 SPARCP09486 303 aa14.88□□□□□ -0.03
CLN3-217ENST00000565354 FAM157BP0CG42 384 aa14.88□□□□□ -0.03
CLN3-217ENST00000565354 NR4A1P22736 598 aa14.88□□□□□ -0.03
CLN3-217ENST00000565354 EPHA2P29317 976 aa14.88□□□□□ -0.03
CLN3-217ENST00000565354 GSTT1P30711 240 aa14.88□□□□□ -0.03
CLN3-217ENST00000565354 TTKP33981 857 aa14.88□□□□□ -0.03
CLN3-217ENST00000565354 ENTPD1P49961 510 aa14.88□□□□□ -0.03
CLN3-217ENST00000565354 CDC42P60953 191 aa14.88□□□□□ -0.03
CLN3-217ENST00000565354 ELF3P78545 371 aaPredicted RBP14.88□□□□□ -0.03
CLN3-217ENST00000565354 HGFACQ04756 655 aa14.88□□□□□ -0.03
CLN3-217ENST00000565354 RAB35Q15286 201 aa14.88□□□□□ -0.03
CLN3-217ENST00000565354 TMEM154Q6P9G4 183 aa14.88□□□□□ -0.03
CLN3-217ENST00000565354 CORO6Q6QEF8 472 aa14.88□□□□□ -0.03
CLN3-217ENST00000565354 ARL9Q6T311 187 aa14.88□□□□□ -0.03
CLN3-217ENST00000565354 UNQ6126/PRO20091Q6UXV3 157 aa14.88□□□□□ -0.03
CLN3-217ENST00000565354 ERI1Q8IV48 349 aaKnown RBP14.88□□□□□ -0.03
CLN3-217ENST00000565354 TCEANCQ8N8B7 351 aa14.88□□□□□ -0.03
CLN3-217ENST00000565354 ZNF511Q8NB15 262 aa14.88□□□□□ -0.03
CLN3-217ENST00000565354 ZNRF4Q8WWF5 429 aa14.88□□□□□ -0.03
CLN3-217ENST00000565354 TMEM158Q8WZ71 300 aa14.88□□□□□ -0.03
CLN3-217ENST00000565354 PITX2Q99697 317 aa14.88□□□□□ -0.03
CLN3-217ENST00000565354 HCAR1Q9BXC0 346 aa14.88□□□□□ -0.03
CLN3-217ENST00000565354 MRPL22Q9NWU5 206 aaKnown RBP14.88□□□□□ -0.03
CLN3-217ENST00000565354 CMAHPQ9Y471 501 aa14.88□□□□□ -0.03
CLN3-217ENST00000565354 LHFPL6Q9Y693 200 aa14.88□□□□□ -0.03
CLN3-217ENST00000565354 COMMD3-BMI1R4GMX3 469 aa14.88□□□□□ -0.03
CLN3-217ENST00000565354 ANK2Q01484 3957 aa14.87□□□□□ -0.03
CLN3-217ENST00000565354 PRODHO43272 600 aa14.87□□□□□ -0.03
CLN3-217ENST00000565354 TLX2O43763 284 aaPredicted RBP14.87□□□□□ -0.03
CLN3-217ENST00000565354 PRKYO43930 277 aa14.87□□□□□ -0.03
CLN3-217ENST00000565354 SNAP29O95721 258 aa14.87□□□□□ -0.03
CLN3-217ENST00000565354 LCKP06239 509 aa14.87□□□□□ -0.03
CLN3-217ENST00000565354 SOD3P08294 240 aa14.87□□□□□ -0.03
CLN3-217ENST00000565354 COX5BP10606 129 aa14.87□□□□□ -0.03
CLN3-217ENST00000565354 BMP4P12644 408 aa14.87□□□□□ -0.03
CLN3-217ENST00000565354 THBS4P35443 961 aa14.87□□□□□ -0.03
CLN3-217ENST00000565354 POLR2IP36954 125 aaKnown RBP14.87□□□□□ -0.03
CLN3-217ENST00000565354 RAD52P43351 418 aa14.87□□□□□ -0.03
CLN3-217ENST00000565354 ATP5J2P56134 94 aa14.87□□□□□ -0.03
CLN3-217ENST00000565354 SLC35D3Q5M8T2 416 aa14.87□□□□□ -0.03
CLN3-217ENST00000565354 LCN1P1Q5VSP4 162 aa14.87□□□□□ -0.03
CLN3-217ENST00000565354 C12orf73Q69YU5 71 aa14.87□□□□□ -0.03
CLN3-217ENST00000565354 LYPD4Q6UWN0 246 aa14.87□□□□□ -0.03
CLN3-217ENST00000565354 VASH1Q7L8A9 365 aaPredicted RBP14.87□□□□□ -0.03
CLN3-217ENST00000565354 OR6N2Q8NGY6 317 aa14.87□□□□□ -0.03
CLN3-217ENST00000565354 OR1F12Q8NHA8 337 aa14.87□□□□□ -0.03
CLN3-217ENST00000565354 PTP4A1Q93096 173 aa14.87□□□□□ -0.03
CLN3-217ENST00000565354 ZMYND19Q96E35 227 aaPredicted RBP14.87□□□□□ -0.03
CLN3-217ENST00000565354 POM121L2Q96KW2 1035 aa14.87□□□□□ -0.03
CLN3-217ENST00000565354 INTS14Q96SY0 518 aa14.87□□□□□ -0.03
CLN3-217ENST00000565354 HDHD2Q9H0R4 259 aa14.87□□□□□ -0.03
CLN3-217ENST00000565354 ZNF442Q9H7R0 627 aa14.87□□□□□ -0.03
CLN3-217ENST00000565354 CBLN4Q9NTU7 201 aa14.87□□□□□ -0.03
CLN3-217ENST00000565354 IMPAD1Q9NX62 359 aa14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms