RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 SBK2P0C263 348 aa14.42□□□□□ -0.1
CLN3-216ENST00000565316 COX4I1P13073 169 aa14.42□□□□□ -0.1
CLN3-216ENST00000565316 TNFRSF1AP19438 455 aa14.42□□□□□ -0.1
CLN3-216ENST00000565316 FPR2P25090 351 aa14.42□□□□□ -0.1
CLN3-216ENST00000565316 SLC7A2P52569 658 aa14.42□□□□□ -0.1
CLN3-216ENST00000565316 AQP6Q13520 282 aa14.42□□□□□ -0.1
CLN3-216ENST00000565316 GPR139Q6DWJ6 353 aa14.42□□□□□ -0.1
CLN3-216ENST00000565316 C3orf56Q8N813 242 aa14.42□□□□□ -0.1
CLN3-216ENST00000565316 OR2Z1Q8NG97 314 aa14.42□□□□□ -0.1
CLN3-216ENST00000565316 PTP4A1Q93096 173 aa14.42□□□□□ -0.1
CLN3-216ENST00000565316 POP5Q969H6 163 aaKnown RBP14.42□□□□□ -0.1
CLN3-216ENST00000565316 ZNF570Q96NI8 536 aa14.42□□□□□ -0.1
CLN3-216ENST00000565316 SIGLEC11Q96RL6 698 aa14.42□□□□□ -0.1
CLN3-216ENST00000565316 DCLRE1CQ96SD1 692 aaKnown RBP14.42□□□□□ -0.1
CLN3-216ENST00000565316 GPX7Q96SL4 187 aaPredicted RBP14.42□□□□□ -0.1
CLN3-216ENST00000565316 NDEL1Q9GZM8 345 aa14.42□□□□□ -0.1
CLN3-216ENST00000565316 CCDC134Q9H6E4 229 aa14.42□□□□□ -0.1
CLN3-216ENST00000565316 NTN4Q9HB63 628 aa14.42□□□□□ -0.1
CLN3-216ENST00000565316 PATZ1Q9HBE1 687 aaKnown RBP14.42□□□□□ -0.1
CLN3-216ENST00000565316 NRIP3Q9NQ35 241 aa14.42□□□□□ -0.1
CLN3-216ENST00000565316 MMP26Q9NRE1 261 aa14.42□□□□□ -0.1
CLN3-216ENST00000565316 IL19Q9UHD0 177 aa14.42□□□□□ -0.1
CLN3-216ENST00000565316 EGFL7Q9UHF1 273 aa14.42□□□□□ -0.1
CLN3-216ENST00000565316 ATPIF1Q9UII2 106 aa14.42□□□□□ -0.1
CLN3-216ENST00000565316 ENPP4Q9Y6X5 453 aa14.42□□□□□ -0.1
CLN3-216ENST00000565316 A0A1W2PRQ8 180 aa14.41□□□□□ -0.1
CLN3-216ENST00000565316 A8MXK9 166 aa14.41□□□□□ -0.1
CLN3-216ENST00000565316 F5H0A9 414 aaPredicted RBP14.41□□□□□ -0.1
CLN3-216ENST00000565316 TRAPPC2LH3BP13 241 aa14.41□□□□□ -0.1
CLN3-216ENST00000565316 J3QW42 95 aa14.41□□□□□ -0.1
CLN3-216ENST00000565316 GSTA4O15217 222 aa14.41□□□□□ -0.1
CLN3-216ENST00000565316 NDUFB2O95178 105 aa14.41□□□□□ -0.1
CLN3-216ENST00000565316 SERPINA1P01009 418 aa14.41□□□□□ -0.1
CLN3-216ENST00000565316 EGR1P18146 543 aa14.41□□□□□ -0.1
CLN3-216ENST00000565316 RBMXP38159 391 aaKnown RBP14.41□□□□□ -0.1
CLN3-216ENST00000565316 SLC6A9P48067 706 aa14.41□□□□□ -0.1
CLN3-216ENST00000565316 GSK3BP49841 420 aa14.41□□□□□ -0.1
CLN3-216ENST00000565316 UBA52P62987 128 aaKnown RBP14.41□□□□□ -0.1
CLN3-216ENST00000565316 DGCR6Q14129 220 aa14.41□□□□□ -0.1
CLN3-216ENST00000565316 ZMYND11Q15326 602 aa14.41□□□□□ -0.1
CLN3-216ENST00000565316 KCNMB1Q16558 191 aa14.41□□□□□ -0.1
CLN3-216ENST00000565316 FKBP9P1Q75LS8 142 aa14.41□□□□□ -0.1
CLN3-216ENST00000565316 CYP4Z1Q86W10 505 aa14.41□□□□□ -0.1
CLN3-216ENST00000565316 GLB1L2Q8IW92 636 aa14.41□□□□□ -0.1
CLN3-216ENST00000565316 KLHL36Q8N4N3 616 aa14.41□□□□□ -0.1
CLN3-216ENST00000565316 OR1F12Q8NHA8 337 aa14.41□□□□□ -0.1
CLN3-216ENST00000565316 SLC7A6Q92536 515 aa14.41□□□□□ -0.1
CLN3-216ENST00000565316 RASD2Q96D21 266 aa14.41□□□□□ -0.1
CLN3-216ENST00000565316 PLEK2Q9NYT0 353 aa14.41□□□□□ -0.1
CLN3-216ENST00000565316 SIGLEC7Q9Y286 467 aa14.41□□□□□ -0.1
CLN3-216ENST00000565316 SURF4O15260 269 aa14.41□□□□□ -0.1
CLN3-216ENST00000565316 SLC16A7O60669 478 aa14.41□□□□□ -0.1
CLN3-216ENST00000565316 KHDRBS3O75525 346 aaKnown RBP14.41□□□□□ -0.1
CLN3-216ENST00000565316 RAC2P15153 192 aa14.41□□□□□ -0.1
CLN3-216ENST00000565316 ZNF12P17014 697 aa14.41□□□□□ -0.1
CLN3-216ENST00000565316 SDHAP31040 664 aa14.41□□□□□ -0.1
CLN3-216ENST00000565316 ERFP50548 548 aa14.41□□□□□ -0.1
CLN3-216ENST00000565316 BTG1P62324 171 aa14.41□□□□□ -0.1
CLN3-216ENST00000565316 ZNF154Q13106 437 aa14.41□□□□□ -0.1
CLN3-216ENST00000565316 KRR1Q13601 381 aaKnown RBP14.41□□□□□ -0.1
CLN3-216ENST00000565316 CCDC92Q53HC0 331 aaPredicted RBP14.41□□□□□ -0.1
CLN3-216ENST00000565316 HACD2Q6Y1H2 254 aa14.41□□□□□ -0.1
CLN3-216ENST00000565316 RRM2BQ7LG56 351 aa14.41□□□□□ -0.1
CLN3-216ENST00000565316 SGMS2Q8NHU3 365 aa14.41□□□□□ -0.1
CLN3-216ENST00000565316 ITLN1Q8WWA0 313 aa14.41□□□□□ -0.1
CLN3-216ENST00000565316 FAM46AQ96IP4 442 aaKnown RBP14.41□□□□□ -0.1
CLN3-216ENST00000565316 SYT4Q9H2B2 425 aa14.41□□□□□ -0.1
CLN3-216ENST00000565316 ASH2LQ9UBL3 628 aa14.41□□□□□ -0.1
CLN3-216ENST00000565316 PPP1R3CQ9UQK1 317 aa14.41□□□□□ -0.1
CLN3-216ENST00000565316 COA3Q9Y2R0 106 aaPredicted RBP14.41□□□□□ -0.1
CLN3-216ENST00000565316 NDUFAB1O14561 156 aa14.4□□□□□ -0.1
CLN3-216ENST00000565316 IMPA2O14732 288 aa14.4□□□□□ -0.1
CLN3-216ENST00000565316 SPRY1O43609 319 aaPredicted RBP14.4□□□□□ -0.1
CLN3-216ENST00000565316 TXNDC12O95881 172 aa14.4□□□□□ -0.1
CLN3-216ENST00000565316 H1F0P07305 194 aaKnown RBP14.4□□□□□ -0.1
CLN3-216ENST00000565316 CPT2P23786 658 aa14.4□□□□□ -0.1
CLN3-216ENST00000565316 OMPP47874 163 aa14.4□□□□□ -0.1
CLN3-216ENST00000565316 RGS6P49758 472 aa14.4□□□□□ -0.1
CLN3-216ENST00000565316 FXYD6P3P58550 94 aa14.4□□□□□ -0.1
CLN3-216ENST00000565316 HIST1H3AP68431 136 aa14.4□□□□□ -0.1
CLN3-216ENST00000565316 GUCY1A3Q02108 690 aa14.4□□□□□ -0.1
CLN3-216ENST00000565316 AWAT1Q58HT5 328 aa14.4□□□□□ -0.1
CLN3-216ENST00000565316 KLF17Q5JT82 389 aaPredicted RBP14.4□□□□□ -0.1
CLN3-216ENST00000565316 HIST2H3PS2Q5TEC6 136 aa14.4□□□□□ -0.1
CLN3-216ENST00000565316 FBXW12Q6X9E4 464 aa14.4□□□□□ -0.1
CLN3-216ENST00000565316 HIST2H3AQ71DI3 136 aa14.4□□□□□ -0.1
CLN3-216ENST00000565316 DOK3Q7L591 496 aa14.4□□□□□ -0.1
CLN3-216ENST00000565316 ADCK1Q86TW2 530 aa14.4□□□□□ -0.1
CLN3-216ENST00000565316 C22orf15Q8WYQ4 148 aa14.4□□□□□ -0.1
CLN3-216ENST00000565316 OR2V2Q96R30 315 aa14.4□□□□□ -0.1
CLN3-216ENST00000565316 EFCAB1Q9HAE3 211 aa14.4□□□□□ -0.1
CLN3-216ENST00000565316 GCM1Q9NP62 436 aa14.4□□□□□ -0.1
CLN3-216ENST00000565316 NDUFAF4Q9P032 175 aa14.4□□□□□ -0.1
CLN3-216ENST00000565316 NUP50Q9UKX7 468 aa14.4□□□□□ -0.1
CLN3-216ENST00000565316 INSIG2Q9Y5U4 225 aa14.4□□□□□ -0.1
CLN3-216ENST00000565316 TRRAPQ9Y4A5 3859 aa14.39□□□□□ -0.11
CLN3-216ENST00000565316 TMEM178BH3BS89 294 aa14.39□□□□□ -0.11
CLN3-216ENST00000565316 IFNL4K9M1U5 179 aa14.39□□□□□ -0.11
CLN3-216ENST00000565316 RER1O15258 196 aa14.39□□□□□ -0.11
CLN3-216ENST00000565316 MDH2P40926 338 aaKnown RBP14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms