RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 SELENOFO60613 162 aa7.9□□□□□ -1.14
VPS35-206ENST00000565228 ICMTO60725 284 aa7.9□□□□□ -1.14
VPS35-206ENST00000565228 SNAP29O95721 258 aa7.9□□□□□ -1.14
VPS35-206ENST00000565228 CCNOP22674 350 aa7.9□□□□□ -1.14
VPS35-206ENST00000565228 CRABP1P29762 137 aa7.9□□□□□ -1.14
VPS35-206ENST00000565228 GLRXP35754 106 aa7.9□□□□□ -1.14
VPS35-206ENST00000565228 SERPINF1P36955 418 aa7.9□□□□□ -1.14
VPS35-206ENST00000565228 ALDH3B1P43353 468 aa7.9□□□□□ -1.14
VPS35-206ENST00000565228 UCP2P55851 309 aa7.9□□□□□ -1.14
VPS35-206ENST00000565228 GABPB1Q06547 395 aaPredicted RBP7.9□□□□□ -1.14
VPS35-206ENST00000565228 AQP6Q13520 282 aa7.9□□□□□ -1.14
VPS35-206ENST00000565228 EFNB3Q15768 340 aa7.9□□□□□ -1.14
VPS35-206ENST00000565228 ZIK1Q3SY52 487 aaPredicted RBP7.9□□□□□ -1.14
VPS35-206ENST00000565228 Q5PR19 223 aa7.9□□□□□ -1.14
VPS35-206ENST00000565228 SLC27A4Q6P1M0 643 aa7.9□□□□□ -1.14
VPS35-206ENST00000565228 TMEM154Q6P9G4 183 aa7.9□□□□□ -1.14
VPS35-206ENST00000565228 SPNS3Q6ZMD2 512 aa7.9□□□□□ -1.14
VPS35-206ENST00000565228 SYT9Q86SS6 491 aa7.9□□□□□ -1.14
VPS35-206ENST00000565228 TGIF2LYQ8IUE0 185 aa7.9□□□□□ -1.14
VPS35-206ENST00000565228 TIGD4Q8IY51 512 aa7.9□□□□□ -1.14
VPS35-206ENST00000565228 RFLNBQ8N5W9 214 aa7.9□□□□□ -1.14
VPS35-206ENST00000565228 OR4F15Q8NGB8 312 aa7.9□□□□□ -1.14
VPS35-206ENST00000565228 SLC25A40Q8TBP6 338 aa7.9□□□□□ -1.14
VPS35-206ENST00000565228 ST7LQ8TDW4 575 aa7.9□□□□□ -1.14
VPS35-206ENST00000565228 MRPL24Q96A35 216 aaKnown RBP7.9□□□□□ -1.14
VPS35-206ENST00000565228 ZMYND19Q96E35 227 aaPredicted RBP7.9□□□□□ -1.14
VPS35-206ENST00000565228 MARS2Q96GW9 593 aaKnown RBP7.9□□□□□ -1.14
VPS35-206ENST00000565228 POM121Q96HA1 1249 aa7.9□□□□□ -1.14
VPS35-206ENST00000565228 SMR3AQ99954 134 aa7.9□□□□□ -1.14
VPS35-206ENST00000565228 BDH2Q9BUT1 245 aa7.9□□□□□ -1.14
VPS35-206ENST00000565228 GABARAPL3Q9BY60 117 aa7.9□□□□□ -1.14
VPS35-206ENST00000565228 CCNB1IP1Q9NPC3 277 aa7.9□□□□□ -1.14
VPS35-206ENST00000565228 KRT84Q9NSB2 600 aa7.9□□□□□ -1.14
VPS35-206ENST00000565228 TVP23BQ9NYZ1 205 aa7.9□□□□□ -1.14
VPS35-206ENST00000565228 NKX1-2Q9UD57 310 aaPredicted RBP7.9□□□□□ -1.14
VPS35-206ENST00000565228 KLHL21Q9UJP4 597 aa7.9□□□□□ -1.14
VPS35-206ENST00000565228 BAIAP2Q9UQB8 552 aa7.9□□□□□ -1.14
VPS35-206ENST00000565228 STARD10Q9Y365 291 aa7.9□□□□□ -1.14
VPS35-206ENST00000565228 TIMM10BQ9Y5J6 103 aa7.9□□□□□ -1.14
VPS35-206ENST00000565228 NAV3Q8IVL0 2385 aa7.9□□□□□ -1.15
VPS35-206ENST00000565228 IGLV3-9A0A075B6K5 115 aa7.89□□□□□ -1.15
VPS35-206ENST00000565228 ERICH4A6NGS2 130 aa7.89□□□□□ -1.15
VPS35-206ENST00000565228 C12orf71A8MTZ7 269 aa7.89□□□□□ -1.15
VPS35-206ENST00000565228 SGCEO43556 437 aa7.89□□□□□ -1.15
VPS35-206ENST00000565228 LILRA1O75019 489 aa7.89□□□□□ -1.15
VPS35-206ENST00000565228 NCR1O76036 304 aa7.89□□□□□ -1.15
VPS35-206ENST00000565228 ZNF250P15622 560 aa7.89□□□□□ -1.15
VPS35-206ENST00000565228 HOXB6P17509 224 aaKnown RBP7.89□□□□□ -1.15
VPS35-206ENST00000565228 GLO1Q04760 184 aa7.89□□□□□ -1.15
VPS35-206ENST00000565228 AADACL4Q5VUY2 407 aa7.89□□□□□ -1.15
VPS35-206ENST00000565228 LPCAT4Q643R3 524 aa7.89□□□□□ -1.15
VPS35-206ENST00000565228 DPPA2Q7Z7J5 298 aa7.89□□□□□ -1.15
VPS35-206ENST00000565228 ZDHHC13Q8IUH4 622 aa7.89□□□□□ -1.15
VPS35-206ENST00000565228 LRRC75A-AS1Q8N1F1 130 aa7.89□□□□□ -1.15
VPS35-206ENST00000565228 PQLC1Q8N2U9 271 aa7.89□□□□□ -1.15
VPS35-206ENST00000565228 CBR4Q8N4T8 237 aa7.89□□□□□ -1.15
VPS35-206ENST00000565228 PROKR2Q8NFJ6 384 aa7.89□□□□□ -1.15
VPS35-206ENST00000565228 OR1F12Q8NHA8 337 aa7.89□□□□□ -1.15
VPS35-206ENST00000565228 PIGTQ969N2 578 aa7.89□□□□□ -1.15
VPS35-206ENST00000565228 TMUB1Q9BVT8 246 aa7.89□□□□□ -1.15
VPS35-206ENST00000565228 OR2J1Q9GZK6 312 aa7.89□□□□□ -1.15
VPS35-206ENST00000565228 NDEL1Q9GZM8 345 aa7.89□□□□□ -1.15
VPS35-206ENST00000565228 OR51V1Q9H2C8 321 aa7.89□□□□□ -1.15
VPS35-206ENST00000565228 USE1Q9NZ43 259 aa7.89□□□□□ -1.15
VPS35-206ENST00000565228 ZNF319Q9P2F9 582 aa7.89□□□□□ -1.15
VPS35-206ENST00000565228 KCNG2Q9UJ96 466 aa7.89□□□□□ -1.15
VPS35-206ENST00000565228 COPS3Q9UNS2 423 aa7.89□□□□□ -1.15
VPS35-206ENST00000565228 IQCMA0A1B0GVH7 501 aa7.88□□□□□ -1.15
VPS35-206ENST00000565228 LYNX1G3V0Z9 82 aa7.88□□□□□ -1.15
VPS35-206ENST00000565228 H7C417 338 aa7.88□□□□□ -1.15
VPS35-206ENST00000565228 ZNF593O00488 134 aaPredicted RBP7.88□□□□□ -1.15
VPS35-206ENST00000565228 MAGEB4O15481 346 aaPredicted RBP7.88□□□□□ -1.15
VPS35-206ENST00000565228 GLCEO94923 617 aa7.88□□□□□ -1.15
VPS35-206ENST00000565228 ADRA2AP08913 450 aa7.88□□□□□ -1.15
VPS35-206ENST00000565228 ACSM4P0C7M7 580 aa7.88□□□□□ -1.15
VPS35-206ENST00000565228 LYNX1P0DP58 116 aa7.88□□□□□ -1.15
VPS35-206ENST00000565228 COX5BP10606 129 aa7.88□□□□□ -1.15
VPS35-206ENST00000565228 NAT2P11245 290 aa7.88□□□□□ -1.15
VPS35-206ENST00000565228 FCGR1AP12314 374 aa7.88□□□□□ -1.15
VPS35-206ENST00000565228 NR2C1P13056 603 aa7.88□□□□□ -1.15
VPS35-206ENST00000565228 GABRB1P18505 474 aa7.88□□□□□ -1.15
VPS35-206ENST00000565228 PAX7P23759 505 aa7.88□□□□□ -1.15
VPS35-206ENST00000565228 IGFBP5P24593 272 aa7.88□□□□□ -1.15
VPS35-206ENST00000565228 PCSK6P29122 969 aa7.88□□□□□ -1.15
VPS35-206ENST00000565228 GSTT1P30711 240 aa7.88□□□□□ -1.15
VPS35-206ENST00000565228 APLNRP35414 380 aa7.88□□□□□ -1.15
VPS35-206ENST00000565228 HTR5AP47898 357 aa7.88□□□□□ -1.15
VPS35-206ENST00000565228 ATP5J2P56134 94 aa7.88□□□□□ -1.15
VPS35-206ENST00000565228 ESRRGP62508 458 aa7.88□□□□□ -1.15
VPS35-206ENST00000565228 KRTAP1-1Q07627 177 aa7.88□□□□□ -1.15
VPS35-206ENST00000565228 SCRN3Q0VDG4 424 aa7.88□□□□□ -1.15
VPS35-206ENST00000565228 HLXQ14774 488 aaPredicted RBP7.88□□□□□ -1.15
VPS35-206ENST00000565228 RAB35Q15286 201 aa7.88□□□□□ -1.15
VPS35-206ENST00000565228 TBC1D28Q2M2D7 210 aa7.88□□□□□ -1.15
VPS35-206ENST00000565228 SNAI3Q3KNW1 292 aa7.88□□□□□ -1.15
VPS35-206ENST00000565228 ELFN2Q5R3F8 820 aa7.88□□□□□ -1.15
VPS35-206ENST00000565228 AGAP6Q5VW22 663 aa7.88□□□□□ -1.15
VPS35-206ENST00000565228 ZFP1Q6P2D0 407 aa7.88□□□□□ -1.15
VPS35-206ENST00000565228 Q6ZR03 302 aa7.88□□□□□ -1.15
VPS35-206ENST00000565228 COLCA1Q6ZS62 124 aa7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms