RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 OR5AS1Q8N127 324 aa14.17□□□□□ -0.14
CLN3-211ENST00000564091 HAVCR1Q96D42 359 aa14.17□□□□□ -0.14
CLN3-211ENST00000564091 OR2V2Q96R30 315 aa14.17□□□□□ -0.14
CLN3-211ENST00000564091 GPA33Q99795 319 aa14.17□□□□□ -0.14
CLN3-211ENST00000564091 MRI1Q9BV20 369 aa14.17□□□□□ -0.14
CLN3-211ENST00000564091 SAR1AQ9NR31 198 aa14.17□□□□□ -0.14
CLN3-211ENST00000564091 GRHPRQ9UBQ7 328 aa14.17□□□□□ -0.14
CLN3-211ENST00000564091 IL19Q9UHD0 177 aa14.17□□□□□ -0.14
CLN3-211ENST00000564091 CMYA5Q8N3K9 4069 aa14.17□□□□□ -0.14
CLN3-211ENST00000564091 A0A087WUU8 490 aa14.16□□□□□ -0.14
CLN3-211ENST00000564091 ELOVL7A1L3X0 281 aa14.16□□□□□ -0.14
CLN3-211ENST00000564091 CEACAM18A8MTB9 384 aa14.16□□□□□ -0.14
CLN3-211ENST00000564091 BBIP1A8MTZ0 92 aa14.16□□□□□ -0.14
CLN3-211ENST00000564091 A8MXK9 166 aa14.16□□□□□ -0.14
CLN3-211ENST00000564091 TMEM178BH3BS89 294 aa14.16□□□□□ -0.14
CLN3-211ENST00000564091 CDC42EP2O14613 210 aa14.16□□□□□ -0.14
CLN3-211ENST00000564091 CD14P08571 375 aa14.16□□□□□ -0.14
CLN3-211ENST00000564091 IGHV4-38-2P0DP08 117 aa14.16□□□□□ -0.14
CLN3-211ENST00000564091 TUBG1P23258 451 aa14.16□□□□□ -0.14
CLN3-211ENST00000564091 CD80P33681 288 aa14.16□□□□□ -0.14
CLN3-211ENST00000564091 GPR4P46093 362 aa14.16□□□□□ -0.14
CLN3-211ENST00000564091 ANKDD1AQ495B1 522 aa14.16□□□□□ -0.14
CLN3-211ENST00000564091 ESCO2Q56NI9 601 aa14.16□□□□□ -0.14
CLN3-211ENST00000564091 MESTQ5EB52 335 aa14.16□□□□□ -0.14
CLN3-211ENST00000564091 ZNF730Q6ZMV8 503 aa14.16□□□□□ -0.14
CLN3-211ENST00000564091 ATG16L2Q8NAA4 619 aa14.16□□□□□ -0.14
CLN3-211ENST00000564091 LZICQ8WZA0 190 aa14.16□□□□□ -0.14
CLN3-211ENST00000564091 PTP4A1Q93096 173 aa14.16□□□□□ -0.14
CLN3-211ENST00000564091 WACQ9BTA9 647 aa14.16□□□□□ -0.14
CLN3-211ENST00000564091 RERGLQ9H628 205 aa14.16□□□□□ -0.14
CLN3-211ENST00000564091 ZNF696Q9H7X3 374 aa14.16□□□□□ -0.14
CLN3-211ENST00000564091 UNKLQ9H9P5 680 aaKnown RBP14.16□□□□□ -0.14
CLN3-211ENST00000564091 GCM1Q9NP62 436 aa14.16□□□□□ -0.14
CLN3-211ENST00000564091 TUBG2Q9NRH3 451 aa14.16□□□□□ -0.14
CLN3-211ENST00000564091 IGHV3-64DA0A0J9YX35 117 aa14.15□□□□□ -0.14
CLN3-211ENST00000564091 PRSS37A4D1T9 235 aa14.15□□□□□ -0.14
CLN3-211ENST00000564091 XKRYO14609 159 aa14.15□□□□□ -0.14
CLN3-211ENST00000564091 IMPA2O14732 288 aa14.15□□□□□ -0.14
CLN3-211ENST00000564091 SURF4O15260 269 aa14.15□□□□□ -0.14
CLN3-211ENST00000564091 IFNW1P05000 195 aa14.15□□□□□ -0.14
CLN3-211ENST00000564091 DBHP09172 617 aa14.15□□□□□ -0.14
CLN3-211ENST00000564091 WNT2P09544 360 aa14.15□□□□□ -0.14
CLN3-211ENST00000564091 MDH2P40926 338 aaKnown RBP14.15□□□□□ -0.14
CLN3-211ENST00000564091 MMP16P51512 607 aa14.15□□□□□ -0.14
CLN3-211ENST00000564091 PAX8Q06710 450 aa14.15□□□□□ -0.14
CLN3-211ENST00000564091 HLXQ14774 488 aaPredicted RBP14.15□□□□□ -0.14
CLN3-211ENST00000564091 MBOAT2Q6ZWT7 520 aa14.15□□□□□ -0.14
CLN3-211ENST00000564091 PCYOX1LQ8NBM8 494 aa14.15□□□□□ -0.14
CLN3-211ENST00000564091 ZNF420Q8TAQ5 688 aaPredicted RBP14.15□□□□□ -0.14
CLN3-211ENST00000564091 ACOT11Q8WXI4 607 aaPredicted RBP14.15□□□□□ -0.14
CLN3-211ENST00000564091 MS4A7Q9GZW8 240 aaPredicted RBP14.15□□□□□ -0.14
CLN3-211ENST00000564091 GID8Q9NWU2 228 aa14.15□□□□□ -0.14
CLN3-211ENST00000564091 CMTM6Q9NX76 183 aa14.15□□□□□ -0.14
CLN3-211ENST00000564091 PTTG3PQ9NZH4 202 aa14.15□□□□□ -0.14
CLN3-211ENST00000564091 ASH2LQ9UBL3 628 aa14.15□□□□□ -0.14
CLN3-211ENST00000564091 OR5V1Q9UGF6 321 aa14.15□□□□□ -0.14
CLN3-211ENST00000564091 TEX13CA0A0J9YWL9 993 aa14.14□□□□□ -0.15
CLN3-211ENST00000564091 SLC16A7O60669 478 aa14.14□□□□□ -0.15
CLN3-211ENST00000564091 ZNF682O95780 498 aa14.14□□□□□ -0.15
CLN3-211ENST00000564091 CYB5R3P00387 301 aaPredicted RBP14.14□□□□□ -0.15
CLN3-211ENST00000564091 GUCY1A3Q02108 690 aa14.14□□□□□ -0.15
CLN3-211ENST00000564091 MAPRE2Q15555 327 aa14.14□□□□□ -0.15
CLN3-211ENST00000564091 SLC9A3R2Q15599 337 aa14.14□□□□□ -0.15
CLN3-211ENST00000564091 ZBED5Q49AG3 693 aa14.14□□□□□ -0.15
CLN3-211ENST00000564091 CCDC92Q53HC0 331 aaPredicted RBP14.14□□□□□ -0.15
CLN3-211ENST00000564091 OR2T2Q6IF00 324 aa14.14□□□□□ -0.15
CLN3-211ENST00000564091 FAM122BQ7Z309 247 aa14.14□□□□□ -0.15
CLN3-211ENST00000564091 RNF113BQ8IZP6 322 aaKnown RBP14.14□□□□□ -0.15
CLN3-211ENST00000564091 OR10AD1Q8NGE0 317 aa14.14□□□□□ -0.15
CLN3-211ENST00000564091 OR52E2Q8NGJ4 325 aa14.14□□□□□ -0.15
CLN3-211ENST00000564091 OR1F12Q8NHA8 337 aa14.14□□□□□ -0.15
CLN3-211ENST00000564091 RASD2Q96D21 266 aa14.14□□□□□ -0.15
CLN3-211ENST00000564091 ZNF570Q96NI8 536 aa14.14□□□□□ -0.15
CLN3-211ENST00000564091 TMEM165Q9HC07 324 aa14.14□□□□□ -0.15
CLN3-211ENST00000564091 COA3Q9Y2R0 106 aaPredicted RBP14.14□□□□□ -0.15
CLN3-211ENST00000564091 OR6C6A6NF89 314 aa14.13□□□□□ -0.15
CLN3-211ENST00000564091 H0YL77 283 aa14.13□□□□□ -0.15
CLN3-211ENST00000564091 RER1O15258 196 aa14.13□□□□□ -0.15
CLN3-211ENST00000564091 GPANK1O95872 356 aa14.13□□□□□ -0.15
CLN3-211ENST00000564091 RNASE1P07998 156 aaKnown RBP14.13□□□□□ -0.15
CLN3-211ENST00000564091 RAC2P15153 192 aa14.13□□□□□ -0.15
CLN3-211ENST00000564091 PAX2Q02962 417 aa14.13□□□□□ -0.15
CLN3-211ENST00000564091 AQP6Q13520 282 aa14.13□□□□□ -0.15
CLN3-211ENST00000564091 TMPRSS11FQ6ZWK6 438 aa14.13□□□□□ -0.15
CLN3-211ENST00000564091 MUC20Q8N307 709 aaPredicted RBP14.13□□□□□ -0.15
CLN3-211ENST00000564091 FAM156AQ8NDB6 213 aa14.13□□□□□ -0.15
CLN3-211ENST00000564091 SLC25A28Q96A46 364 aa14.13□□□□□ -0.15
CLN3-211ENST00000564091 RCN3Q96D15 328 aa14.13□□□□□ -0.15
CLN3-211ENST00000564091 MEGF10Q96KG7 1140 aa14.13□□□□□ -0.15
CLN3-211ENST00000564091 COG8Q96MW5 612 aa14.13□□□□□ -0.15
CLN3-211ENST00000564091 SSBP3Q9BWW4 388 aaPredicted RBP14.13□□□□□ -0.15
CLN3-211ENST00000564091 SYT4Q9H2B2 425 aa14.13□□□□□ -0.15
CLN3-211ENST00000564091 ZMAT3Q9HA38 289 aaKnown RBP14.13□□□□□ -0.15
CLN3-211ENST00000564091 AHCYL1O43865 530 aa14.12□□□□□ -0.15
CLN3-211ENST00000564091 KHDRBS3O75525 346 aaKnown RBP14.12□□□□□ -0.15
CLN3-211ENST00000564091 TROVE2P10155 538 aaKnown RBP eCLIP14.12□□□□□ -0.15
CLN3-211ENST00000564091 RPS2P15880 293 aaKnown RBP14.12□□□□□ -0.15
CLN3-211ENST00000564091 KRR1Q13601 381 aaKnown RBP14.12□□□□□ -0.15
CLN3-211ENST00000564091 IFI44LQ53G44 452 aa14.12□□□□□ -0.15
CLN3-211ENST00000564091 FAM201AQ5SY85 155 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms