RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 CCDC22O60826 627 aa16.04■□□□□ 0.16
VPS35-202ENST00000561713 NDUFB2O95178 105 aa16.04■□□□□ 0.16
VPS35-202ENST00000561713 DBHP09172 617 aa16.04■□□□□ 0.16
VPS35-202ENST00000561713 SCRN3Q0VDG4 424 aa16.04■□□□□ 0.16
VPS35-202ENST00000561713 ANKDD1AQ495B1 522 aa16.04■□□□□ 0.16
VPS35-202ENST00000561713 UNQ6126/PRO20091Q6UXV3 157 aa16.04■□□□□ 0.16
VPS35-202ENST00000561713 RRM2BQ7LG56 351 aa16.04■□□□□ 0.16
VPS35-202ENST00000561713 OR52J3Q8NH60 311 aa16.04■□□□□ 0.16
VPS35-202ENST00000561713 NANPQ8TBE9 248 aa16.04■□□□□ 0.16
VPS35-202ENST00000561713 DCLRE1CQ96SD1 692 aaKnown RBP16.04■□□□□ 0.16
VPS35-202ENST00000561713 ZNF747Q9BV97 191 aa16.04■□□□□ 0.16
VPS35-202ENST00000561713 EGLN1Q9GZT9 426 aa16.04■□□□□ 0.16
VPS35-202ENST00000561713 FAM107BQ9H098 131 aa16.04■□□□□ 0.16
VPS35-202ENST00000561713 PLEK2Q9NYT0 353 aa16.04■□□□□ 0.16
VPS35-202ENST00000561713 NDUFAF4Q9P032 175 aa16.04■□□□□ 0.16
VPS35-202ENST00000561713 TMEM5Q9Y2B1 443 aa16.04■□□□□ 0.16
VPS35-202ENST00000561713 COA3Q9Y2R0 106 aaPredicted RBP16.04■□□□□ 0.16
VPS35-202ENST00000561713 DOCK11Q5JSL3 2073 aa16.03■□□□□ 0.16
VPS35-202ENST00000561713 H3BSA7 217 aa16.03■□□□□ 0.16
VPS35-202ENST00000561713 J3QLI3 93 aa16.03■□□□□ 0.16
VPS35-202ENST00000561713 GSTM3P21266 225 aa16.03■□□□□ 0.16
VPS35-202ENST00000561713 OMPP47874 163 aa16.03■□□□□ 0.16
VPS35-202ENST00000561713 UBA52P62987 128 aaKnown RBP16.03■□□□□ 0.16
VPS35-202ENST00000561713 AQP6Q13520 282 aa16.03■□□□□ 0.16
VPS35-202ENST00000561713 MEP1BQ16820 701 aa16.03■□□□□ 0.16
VPS35-202ENST00000561713 DCAF12L2Q5VW00 463 aa16.03■□□□□ 0.16
VPS35-202ENST00000561713 HACD2Q6Y1H2 254 aa16.03■□□□□ 0.16
VPS35-202ENST00000561713 OR5AS1Q8N127 324 aa16.03■□□□□ 0.16
VPS35-202ENST00000561713 OR2Z1Q8NG97 314 aa16.03■□□□□ 0.16
VPS35-202ENST00000561713 TSSK2Q96PF2 358 aa16.03■□□□□ 0.16
VPS35-202ENST00000561713 GPA33Q99795 319 aa16.03■□□□□ 0.16
VPS35-202ENST00000561713 ANKRD19PQ9H560 264 aa16.03■□□□□ 0.16
VPS35-202ENST00000561713 CYSLTR2Q9NS75 346 aa16.03■□□□□ 0.16
VPS35-202ENST00000561713 OPN4Q9UHM6 478 aa16.03■□□□□ 0.16
VPS35-202ENST00000561713 PURGQ9UJV8 347 aaKnown RBP16.03■□□□□ 0.16
VPS35-202ENST00000561713 POLR1DQ9Y2S0 133 aa16.03■□□□□ 0.16
VPS35-202ENST00000561713 PPIAL4AQ9Y536 164 aa16.03■□□□□ 0.16
VPS35-202ENST00000561713 PPP1R3DO95685 299 aa16.02■□□□□ 0.16
VPS35-202ENST00000561713 CD55P08174 381 aa16.02■□□□□ 0.16
VPS35-202ENST00000561713 ADH4P08319 380 aa16.02■□□□□ 0.16
VPS35-202ENST00000561713 SDHAP31040 664 aa16.02■□□□□ 0.16
VPS35-202ENST00000561713 PRSS12P56730 875 aa16.02■□□□□ 0.16
VPS35-202ENST00000561713 ZMAT1Q5H9K5 638 aa16.02■□□□□ 0.16
VPS35-202ENST00000561713 SYT9Q86SS6 491 aa16.02■□□□□ 0.16
VPS35-202ENST00000561713 NPEPL1Q8NDH3 523 aa16.02■□□□□ 0.16
VPS35-202ENST00000561713 ITLN1Q8WWA0 313 aa16.02■□□□□ 0.16
VPS35-202ENST00000561713 CMBLQ96DG6 245 aa16.02■□□□□ 0.16
VPS35-202ENST00000561713 ELAC2Q9BQ52 826 aaKnown RBP16.02■□□□□ 0.16
VPS35-202ENST00000561713 NDEL1Q9GZM8 345 aa16.02■□□□□ 0.16
VPS35-202ENST00000561713 ZNF696Q9H7X3 374 aa16.02■□□□□ 0.16
VPS35-202ENST00000561713 PTTG3PQ9NZH4 202 aa16.02■□□□□ 0.16
VPS35-202ENST00000561713 ADA2Q9NZK5 511 aa16.02■□□□□ 0.16
VPS35-202ENST00000561713 CGGBP1Q9UFW8 167 aaPredicted RBP16.02■□□□□ 0.16
VPS35-202ENST00000561713 KLHL21Q9UJP4 597 aa16.02■□□□□ 0.16
VPS35-202ENST00000561713 RPS6KA6Q9UK32 745 aa16.02■□□□□ 0.16
VPS35-202ENST00000561713 STARD10Q9Y365 291 aa16.02■□□□□ 0.16
VPS35-202ENST00000561713 IER3IP1Q9Y5U9 82 aa16.02■□□□□ 0.16
VPS35-202ENST00000561713 IGHV3-64DA0A0J9YX35 117 aa16.01■□□□□ 0.15
VPS35-202ENST00000561713 A0A1W2PRQ8 180 aa16.01■□□□□ 0.15
VPS35-202ENST00000561713 OR6C6A6NF89 314 aa16.01■□□□□ 0.15
VPS35-202ENST00000561713 UNC119BA6NIH7 251 aa16.01■□□□□ 0.15
VPS35-202ENST00000561713 DCTN6O00399 190 aa16.01■□□□□ 0.15
VPS35-202ENST00000561713 RER1O15258 196 aa16.01■□□□□ 0.15
VPS35-202ENST00000561713 KHDRBS3O75525 346 aaKnown RBP16.01■□□□□ 0.15
VPS35-202ENST00000561713 IGHV2-70P01814 119 aa16.01■□□□□ 0.15
VPS35-202ENST00000561713 COX5BP10606 129 aa16.01■□□□□ 0.15
VPS35-202ENST00000561713 CENPAP49450 140 aa16.01■□□□□ 0.15
VPS35-202ENST00000561713 SEC61A1P61619 476 aaKnown RBP16.01■□□□□ 0.15
VPS35-202ENST00000561713 DGCR6Q14129 220 aa16.01■□□□□ 0.15
VPS35-202ENST00000561713 HLXQ14774 488 aaPredicted RBP16.01■□□□□ 0.15
VPS35-202ENST00000561713 CCDC92Q53HC0 331 aaPredicted RBP16.01■□□□□ 0.15
VPS35-202ENST00000561713 CORO6Q6QEF8 472 aa16.01■□□□□ 0.15
VPS35-202ENST00000561713 SHISA2Q6UWI4 295 aa16.01■□□□□ 0.15
VPS35-202ENST00000561713 GLB1L2Q8IW92 636 aa16.01■□□□□ 0.15
VPS35-202ENST00000561713 OR10AD1Q8NGE0 317 aa16.01■□□□□ 0.15
VPS35-202ENST00000561713 FANK1Q8TC84 345 aa16.01■□□□□ 0.15
VPS35-202ENST00000561713 C7orf34Q96L11 122 aa16.01■□□□□ 0.15
VPS35-202ENST00000561713 GPX7Q96SL4 187 aaPredicted RBP16.01■□□□□ 0.15
VPS35-202ENST00000561713 NUAK2Q9H093 628 aa16.01■□□□□ 0.15
VPS35-202ENST00000561713 MYLK2Q9H1R3 596 aa16.01■□□□□ 0.15
VPS35-202ENST00000561713 C7orf69Q9H7B7 122 aa16.01■□□□□ 0.15
VPS35-202ENST00000561713 NRIP3Q9NQ35 241 aa16.01■□□□□ 0.15
VPS35-202ENST00000561713 TBCCD1Q9NVR7 557 aa16.01■□□□□ 0.15
VPS35-202ENST00000561713 VSX1Q9NZR4 365 aaPredicted RBP16.01■□□□□ 0.15
VPS35-202ENST00000561713 ZDHHC8Q9ULC8 765 aa16.01■□□□□ 0.15
VPS35-202ENST00000561713 AURKCQ9UQB9 309 aa16.01■□□□□ 0.15
VPS35-202ENST00000561713 FAM32AQ9Y421 112 aaKnown RBP16.01■□□□□ 0.15
VPS35-202ENST00000561713 PTP4A3O75365 173 aa16■□□□□ 0.15
VPS35-202ENST00000561713 FSHBP01225 129 aa16■□□□□ 0.15
VPS35-202ENST00000561713 SBK2P0C263 348 aa16■□□□□ 0.15
VPS35-202ENST00000561713 ZFP36P26651 326 aaKnown RBP16■□□□□ 0.15
VPS35-202ENST00000561713 CDKN2AP42771 156 aaKnown RBP16■□□□□ 0.15
VPS35-202ENST00000561713 SPIBQ01892 262 aa16■□□□□ 0.15
VPS35-202ENST00000561713 CDK5R2Q13319 367 aa16■□□□□ 0.15
VPS35-202ENST00000561713 GLYATQ6IB77 296 aa16■□□□□ 0.15
VPS35-202ENST00000561713 ARL9Q6T311 187 aa16■□□□□ 0.15
VPS35-202ENST00000561713 OR1F12Q8NHA8 337 aa16■□□□□ 0.15
VPS35-202ENST00000561713 DVL3Q92997 716 aaPredicted RBP16■□□□□ 0.15
VPS35-202ENST00000561713 C1QTNF5Q9BXJ0 243 aa16■□□□□ 0.15
VPS35-202ENST00000561713 FN3KQ9H479 309 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms