RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 ATP6V1G3Q96LB4 118 aa13.76□□□□□ -0.21
CLN3-208ENST00000561505 PRRC1Q96M27 445 aa13.76□□□□□ -0.21
CLN3-208ENST00000561505 OR2V2Q96R30 315 aa13.76□□□□□ -0.21
CLN3-208ENST00000561505 KIR2DS1A0A191URI9 304 aa13.75□□□□□ -0.21
CLN3-208ENST00000561505 IFNA14P01570 189 aa13.75□□□□□ -0.21
CLN3-208ENST00000561505 IFI30P13284 250 aa13.75□□□□□ -0.21
CLN3-208ENST00000561505 SELENOWP63302 87 aa13.75□□□□□ -0.21
CLN3-208ENST00000561505 DEFA6Q01524 100 aa13.75□□□□□ -0.21
CLN3-208ENST00000561505 TOP3AQ13472 1001 aaPredicted RBP13.75□□□□□ -0.21
CLN3-208ENST00000561505 CYBRD1Q53TN4 286 aa13.75□□□□□ -0.21
CLN3-208ENST00000561505 SLC27A4Q6P1M0 643 aa13.75□□□□□ -0.21
CLN3-208ENST00000561505 C16orf87Q6PH81 154 aa13.75□□□□□ -0.21
CLN3-208ENST00000561505 LRRN1Q6UXK5 716 aa13.75□□□□□ -0.21
CLN3-208ENST00000561505 FAM122BQ7Z309 247 aa13.75□□□□□ -0.21
CLN3-208ENST00000561505 RNF113BQ8IZP6 322 aaKnown RBP13.75□□□□□ -0.21
CLN3-208ENST00000561505 OFCC1Q8IZS5 231 aa13.75□□□□□ -0.21
CLN3-208ENST00000561505 PARP8Q8N3A8 854 aa13.75□□□□□ -0.21
CLN3-208ENST00000561505 RAB40AQ8WXH6 277 aa13.75□□□□□ -0.21
CLN3-208ENST00000561505 THOC1Q96FV9 657 aaKnown RBP13.75□□□□□ -0.21
CLN3-208ENST00000561505 SIKE1Q9BRV8 207 aa13.75□□□□□ -0.21
CLN3-208ENST00000561505 OR5V1Q9UGF6 321 aa13.75□□□□□ -0.21
CLN3-208ENST00000561505 IGHV2-70DA0A0C4DH43 119 aa13.74□□□□□ -0.21
CLN3-208ENST00000561505 A0A1B0GUS0 222 aa13.74□□□□□ -0.21
CLN3-208ENST00000561505 FFAR1O14842 300 aa13.74□□□□□ -0.21
CLN3-208ENST00000561505 SGCEO43556 437 aa13.74□□□□□ -0.21
CLN3-208ENST00000561505 ZNF26P17031 533 aaPredicted RBP13.74□□□□□ -0.21
CLN3-208ENST00000561505 ERFP50548 548 aa13.74□□□□□ -0.21
CLN3-208ENST00000561505 BPIFB3P59826 476 aa13.74□□□□□ -0.21
CLN3-208ENST00000561505 LSM6P62312 80 aaKnown RBP13.74□□□□□ -0.21
CLN3-208ENST00000561505 HIST1H3AP68431 136 aa13.74□□□□□ -0.21
CLN3-208ENST00000561505 KCNMB1Q16558 191 aa13.74□□□□□ -0.21
CLN3-208ENST00000561505 HIST2H3PS2Q5TEC6 136 aa13.74□□□□□ -0.21
CLN3-208ENST00000561505 TMPRSS11FQ6ZWK6 438 aa13.74□□□□□ -0.21
CLN3-208ENST00000561505 HIST2H3AQ71DI3 136 aa13.74□□□□□ -0.21
CLN3-208ENST00000561505 OR8G5Q8NG78 346 aa13.74□□□□□ -0.21
CLN3-208ENST00000561505 MAGEB18Q96M61 343 aa13.74□□□□□ -0.21
CLN3-208ENST00000561505 ECSITQ9BQ95 431 aa13.74□□□□□ -0.21
CLN3-208ENST00000561505 SSBP3Q9BWW4 388 aaPredicted RBP13.74□□□□□ -0.21
CLN3-208ENST00000561505 MS4A7Q9GZW8 240 aaPredicted RBP13.74□□□□□ -0.21
CLN3-208ENST00000561505 EMC7Q9NPA0 242 aa13.74□□□□□ -0.21
CLN3-208ENST00000561505 MIOXQ9UGB7 285 aa13.74□□□□□ -0.21
CLN3-208ENST00000561505 SOX21Q9Y651 276 aaPredicted RBP13.74□□□□□ -0.21
CLN3-208ENST00000561505 NOTCH1P46531 2555 aa13.74□□□□□ -0.21
CLN3-208ENST00000561505 TEX13CA0A0J9YWL9 993 aa13.73□□□□□ -0.21
CLN3-208ENST00000561505 A0A1W2PPL8 197 aa13.73□□□□□ -0.21
CLN3-208ENST00000561505 EDF1O60869 148 aaKnown RBP13.73□□□□□ -0.21
CLN3-208ENST00000561505 CD14P08571 375 aa13.73□□□□□ -0.21
CLN3-208ENST00000561505 MDKP21741 143 aaPredicted RBP13.73□□□□□ -0.21
CLN3-208ENST00000561505 GUCY1A3Q02108 690 aa13.73□□□□□ -0.21
CLN3-208ENST00000561505 AQP6Q13520 282 aa13.73□□□□□ -0.21
CLN3-208ENST00000561505 TTMPQ5BVD1 217 aa13.73□□□□□ -0.21
CLN3-208ENST00000561505 MESTQ5EB52 335 aa13.73□□□□□ -0.21
CLN3-208ENST00000561505 OAFQ86UD1 273 aa13.73□□□□□ -0.21
CLN3-208ENST00000561505 IGFN1Q86VF2 1251 aa13.73□□□□□ -0.21
CLN3-208ENST00000561505 KLBQ86Z14 1044 aa13.73□□□□□ -0.21
CLN3-208ENST00000561505 NRMQ8IXM6 262 aa13.73□□□□□ -0.21
CLN3-208ENST00000561505 OR51A7Q8NH64 312 aa13.73□□□□□ -0.21
CLN3-208ENST00000561505 TMIGD2Q96BF3 282 aa13.73□□□□□ -0.21
CLN3-208ENST00000561505 MEGF10Q96KG7 1140 aa13.73□□□□□ -0.21
CLN3-208ENST00000561505 SLC30A2Q9BRI3 323 aa13.73□□□□□ -0.21
CLN3-208ENST00000561505 TRAV27A0A087WT01 109 aa13.72□□□□□ -0.21
CLN3-208ENST00000561505 A0A087WUU8 490 aa13.72□□□□□ -0.21
CLN3-208ENST00000561505 PRSS37A4D1T9 235 aa13.72□□□□□ -0.21
CLN3-208ENST00000561505 CDC42EP2O14613 210 aa13.72□□□□□ -0.21
CLN3-208ENST00000561505 DOK2O60496 412 aa13.72□□□□□ -0.21
CLN3-208ENST00000561505 CTLA4P16410 223 aa13.72□□□□□ -0.21
CLN3-208ENST00000561505 GATA4P43694 442 aa13.72□□□□□ -0.21
CLN3-208ENST00000561505 HTR5AP47898 357 aa13.72□□□□□ -0.21
CLN3-208ENST00000561505 RGS6P49758 472 aa13.72□□□□□ -0.21
CLN3-208ENST00000561505 ZNF404Q494X3 552 aa13.72□□□□□ -0.21
CLN3-208ENST00000561505 CCDC92Q53HC0 331 aaPredicted RBP13.72□□□□□ -0.21
CLN3-208ENST00000561505 ZNF362Q5T0B9 420 aaPredicted RBP13.72□□□□□ -0.21
CLN3-208ENST00000561505 ZNF841Q6ZN19 808 aa13.72□□□□□ -0.21
CLN3-208ENST00000561505 COLCA1Q6ZS62 124 aa13.72□□□□□ -0.21
CLN3-208ENST00000561505 OR13G1Q8NGZ3 307 aa13.72□□□□□ -0.21
CLN3-208ENST00000561505 ACOT11Q8WXI4 607 aaPredicted RBP13.72□□□□□ -0.21
CLN3-208ENST00000561505 RASD2Q96D21 266 aa13.72□□□□□ -0.21
CLN3-208ENST00000561505 NEIL1Q96FI4 390 aaPredicted RBP13.72□□□□□ -0.21
CLN3-208ENST00000561505 TMEM246Q9BRR3 403 aa13.72□□□□□ -0.21
CLN3-208ENST00000561505 EFCAB9A8MZ26 197 aa13.71□□□□□ -0.21
CLN3-208ENST00000561505 FAM220BPB1ANY3 271 aa13.71□□□□□ -0.21
CLN3-208ENST00000561505 MLNRO43193 412 aa13.71□□□□□ -0.21
CLN3-208ENST00000561505 PTP4A3O75365 173 aa13.71□□□□□ -0.21
CLN3-208ENST00000561505 PMELP40967 661 aa13.71□□□□□ -0.21
CLN3-208ENST00000561505 TRAM2Q15035 370 aa13.71□□□□□ -0.21
CLN3-208ENST00000561505 RSPO1Q2MKA7 263 aaPredicted RBP13.71□□□□□ -0.21
CLN3-208ENST00000561505 KRTAP27-1Q3LI81 207 aa13.71□□□□□ -0.21
CLN3-208ENST00000561505 BTNL3Q6UXE8 466 aa13.71□□□□□ -0.21
CLN3-208ENST00000561505 FITM2Q8N6M3 262 aa13.71□□□□□ -0.21
CLN3-208ENST00000561505 OR1F12Q8NHA8 337 aa13.71□□□□□ -0.21
CLN3-208ENST00000561505 SLC7A6Q92536 515 aa13.71□□□□□ -0.21
CLN3-208ENST00000561505 TAF15Q92804 592 aaKnown RBP eCLIP13.71□□□□□ -0.21
CLN3-208ENST00000561505 Q96M85 177 aa13.71□□□□□ -0.21
CLN3-208ENST00000561505 GPX7Q96SL4 187 aaPredicted RBP13.71□□□□□ -0.21
CLN3-208ENST00000561505 MRGBPQ9NV56 204 aa13.71□□□□□ -0.21
CLN3-208ENST00000561505 INTS9Q9NV88 658 aaKnown RBP13.71□□□□□ -0.21
CLN3-208ENST00000561505 VSX1Q9NZR4 365 aaPredicted RBP13.71□□□□□ -0.21
CLN3-208ENST00000561505 ADAM18Q9Y3Q7 739 aa13.71□□□□□ -0.21
CLN3-208ENST00000561505 SNX13Q9Y5W8 968 aa13.71□□□□□ -0.21
CLN3-208ENST00000561505 PRKDCP78527 4128 aaKnown RBP13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms