RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 SNCBQ16143 134 aa8.74□□□□□ -1.01
USP3-216ENST00000559873 HIST2H3PS2Q5TEC6 136 aa8.74□□□□□ -1.01
USP3-216ENST00000559873 ZNF691Q5VV52 312 aa8.74□□□□□ -1.01
USP3-216ENST00000559873 ZNF544Q6NX49 715 aa8.74□□□□□ -1.01
USP3-216ENST00000559873 KCTD18Q6PI47 426 aaPredicted RBP8.74□□□□□ -1.01
USP3-216ENST00000559873 HIST2H3AQ71DI3 136 aa8.74□□□□□ -1.01
USP3-216ENST00000559873 RHOUQ7L0Q8 258 aa8.74□□□□□ -1.01
USP3-216ENST00000559873 DPY19L4Q7Z388 723 aa8.74□□□□□ -1.01
USP3-216ENST00000559873 DCXRQ7Z4W1 244 aa8.74□□□□□ -1.01
USP3-216ENST00000559873 CDC20BQ86Y33 519 aa8.74□□□□□ -1.01
USP3-216ENST00000559873 ZNF584Q8IVC4 421 aa8.74□□□□□ -1.01
USP3-216ENST00000559873 TIGD4Q8IY51 512 aa8.74□□□□□ -1.01
USP3-216ENST00000559873 ENTHD1Q8IYW4 607 aa8.74□□□□□ -1.01
USP3-216ENST00000559873 ZNF295-AS1Q8N0V1 137 aa8.74□□□□□ -1.01
USP3-216ENST00000559873 NUP37Q8NFH4 326 aa8.74□□□□□ -1.01
USP3-216ENST00000559873 AKR7LQ8NHP1 331 aa8.74□□□□□ -1.01
USP3-216ENST00000559873 OTOSQ8NHW6 89 aa8.74□□□□□ -1.01
USP3-216ENST00000559873 ZNRF4Q8WWF5 429 aa8.74□□□□□ -1.01
USP3-216ENST00000559873 NRG4Q8WWG1 115 aa8.74□□□□□ -1.01
USP3-216ENST00000559873 ASB17Q8WXJ9 295 aa8.74□□□□□ -1.01
USP3-216ENST00000559873 FBXW5Q969U6 566 aa8.74□□□□□ -1.01
USP3-216ENST00000559873 MS4A3Q96HJ5 214 aa8.74□□□□□ -1.01
USP3-216ENST00000559873 COG8Q96MW5 612 aa8.74□□□□□ -1.01
USP3-216ENST00000559873 ZNF582Q96NG8 517 aaPredicted RBP8.74□□□□□ -1.01
USP3-216ENST00000559873 HS3ST6Q96QI5 342 aa8.74□□□□□ -1.01
USP3-216ENST00000559873 COPS4Q9BT78 406 aa8.74□□□□□ -1.01
USP3-216ENST00000559873 BCL2L14Q9BZR8 327 aa8.74□□□□□ -1.01
USP3-216ENST00000559873 YIPF3Q9GZM5 350 aa8.74□□□□□ -1.01
USP3-216ENST00000559873 WNT5BQ9H1J7 359 aa8.74□□□□□ -1.01
USP3-216ENST00000559873 WDR76Q9H967 626 aa8.74□□□□□ -1.01
USP3-216ENST00000559873 ELOVL3Q9HB03 270 aa8.74□□□□□ -1.01
USP3-216ENST00000559873 LAMP5Q9UJQ1 280 aa8.74□□□□□ -1.01
USP3-216ENST00000559873 PCDHGB1Q9Y5G3 927 aa8.74□□□□□ -1.01
USP3-216ENST00000559873 ROS1P08922 2347 aa8.74□□□□□ -1.01
USP3-216ENST00000559873 PRR14LQ5THK1 2151 aa8.73□□□□□ -1.01
USP3-216ENST00000559873 NOTCH2Q04721 2471 aa8.73□□□□□ -1.01
USP3-216ENST00000559873 NAV2Q8IVL1 2488 aa8.73□□□□□ -1.01
USP3-216ENST00000559873 SHISA9B4DS77 424 aa8.73□□□□□ -1.01
USP3-216ENST00000559873 DLGAP1O14490 977 aa8.73□□□□□ -1.01
USP3-216ENST00000559873 HS3ST1O14792 307 aa8.73□□□□□ -1.01
USP3-216ENST00000559873 SYNGR3O43761 229 aa8.73□□□□□ -1.01
USP3-216ENST00000559873 SELENOFO60613 162 aa8.73□□□□□ -1.01
USP3-216ENST00000559873 ENTPD6O75354 484 aa8.73□□□□□ -1.01
USP3-216ENST00000559873 ABHD16AO95870 558 aa8.73□□□□□ -1.01
USP3-216ENST00000559873 LYNP07948 512 aa8.73□□□□□ -1.01
USP3-216ENST00000559873 MRPL3P09001 348 aaKnown RBP8.73□□□□□ -1.01
USP3-216ENST00000559873 ZNF35P13682 527 aa8.73□□□□□ -1.01
USP3-216ENST00000559873 LOXP28300 417 aaPredicted RBP8.73□□□□□ -1.01
USP3-216ENST00000559873 HSD11B1P28845 292 aa8.73□□□□□ -1.01
USP3-216ENST00000559873 PCSK6P29122 969 aa8.73□□□□□ -1.01
USP3-216ENST00000559873 RAD52P43351 418 aa8.73□□□□□ -1.01
USP3-216ENST00000559873 MTNR1AP48039 350 aa8.73□□□□□ -1.01
USP3-216ENST00000559873 TPTEP56180 551 aa8.73□□□□□ -1.01
USP3-216ENST00000559873 ADARB1P78563 741 aaKnown RBP8.73□□□□□ -1.01
USP3-216ENST00000559873 SPOCK1Q08629 439 aa8.73□□□□□ -1.01
USP3-216ENST00000559873 MAD2L1BPQ15013 274 aaPredicted RBP8.73□□□□□ -1.01
USP3-216ENST00000559873 ZNF672Q499Z4 452 aaPredicted RBP8.73□□□□□ -1.01
USP3-216ENST00000559873 CCDC92Q53HC0 331 aaPredicted RBP8.73□□□□□ -1.01
USP3-216ENST00000559873 OTPQ5XKR4 325 aa8.73□□□□□ -1.01
USP3-216ENST00000559873 HIST2H2BCQ6DN03 193 aa8.73□□□□□ -1.01
USP3-216ENST00000559873 TMEM154Q6P9G4 183 aa8.73□□□□□ -1.01
USP3-216ENST00000559873 CORO6Q6QEF8 472 aa8.73□□□□□ -1.01
USP3-216ENST00000559873 LYPD4Q6UWN0 246 aa8.73□□□□□ -1.01
USP3-216ENST00000559873 CFAP77Q6ZQR2 320 aa8.73□□□□□ -1.01
USP3-216ENST00000559873 MYPOPQ86VE0 399 aaPredicted RBP8.73□□□□□ -1.01
USP3-216ENST00000559873 OR51G2Q8NGK0 314 aa8.73□□□□□ -1.01
USP3-216ENST00000559873 RHOXF1Q8NHV9 184 aa8.73□□□□□ -1.01
USP3-216ENST00000559873 AKAP1Q92667 903 aaKnown RBP eCLIP8.73□□□□□ -1.01
USP3-216ENST00000559873 TFAP2CQ92754 450 aa8.73□□□□□ -1.01
USP3-216ENST00000559873 SLAMF6Q96DU3 332 aa8.73□□□□□ -1.01
USP3-216ENST00000559873 MRPL48Q96GC5 212 aaKnown RBP8.73□□□□□ -1.01
USP3-216ENST00000559873 POM121L2Q96KW2 1035 aa8.73□□□□□ -1.01
USP3-216ENST00000559873 ZNF75AQ96N20 296 aa8.73□□□□□ -1.01
USP3-216ENST00000559873 DHRS9Q9BPW9 319 aa8.73□□□□□ -1.01
USP3-216ENST00000559873 Q9H521 79 aa8.73□□□□□ -1.01
USP3-216ENST00000559873 ZNF442Q9H7R0 627 aa8.73□□□□□ -1.01
USP3-216ENST00000559873 NIPAL2Q9H841 368 aa8.73□□□□□ -1.01
USP3-216ENST00000559873 SP140LQ9H930 580 aa8.73□□□□□ -1.01
USP3-216ENST00000559873 UBTD1Q9HAC8 227 aa8.73□□□□□ -1.01
USP3-216ENST00000559873 ADGRL4Q9HBW9 690 aa8.73□□□□□ -1.01
USP3-216ENST00000559873 DDX28Q9NUL7 540 aaKnown RBP8.73□□□□□ -1.01
USP3-216ENST00000559873 CISD1Q9NZ45 108 aaKnown RBP8.73□□□□□ -1.01
USP3-216ENST00000559873 FBXO9Q9UK97 447 aaPredicted RBP8.73□□□□□ -1.01
USP3-216ENST00000559873 RPL36Q9Y3U8 105 aaKnown RBP8.73□□□□□ -1.01
USP3-216ENST00000559873 UTP20O75691 2785 aaKnown RBP8.72□□□□□ -1.01
USP3-216ENST00000559873 ZNF670-ZNF695F2Z2N8 137 aa8.72□□□□□ -1.01
USP3-216ENST00000559873 ICMTO60725 284 aa8.72□□□□□ -1.01
USP3-216ENST00000559873 LCKP06239 509 aa8.72□□□□□ -1.01
USP3-216ENST00000559873 SBK2P0C263 348 aa8.72□□□□□ -1.01
USP3-216ENST00000559873 BMP4P12644 408 aa8.72□□□□□ -1.01
USP3-216ENST00000559873 GABRB1P18505 474 aa8.72□□□□□ -1.01
USP3-216ENST00000559873 NR4A1P22736 598 aa8.72□□□□□ -1.01
USP3-216ENST00000559873 TUBG1P23258 451 aa8.72□□□□□ -1.01
USP3-216ENST00000559873 CALCRP30988 508 aa8.72□□□□□ -1.01
USP3-216ENST00000559873 GLRXP35754 106 aa8.72□□□□□ -1.01
USP3-216ENST00000559873 RPS27P42677 84 aaKnown RBP8.72□□□□□ -1.01
USP3-216ENST00000559873 SLC6A9P48067 706 aa8.72□□□□□ -1.01
USP3-216ENST00000559873 DBPQ10586 325 aaPredicted RBP8.72□□□□□ -1.01
USP3-216ENST00000559873 AGAP6Q5VW22 663 aa8.72□□□□□ -1.01
USP3-216ENST00000559873 KRT80Q6KB66 452 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms