RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 ACBD4Q8NC06 268 aa8.04□□□□□ -1.12
LDLR-210ENST00000559340 OR4F15Q8NGB8 312 aa8.04□□□□□ -1.12
LDLR-210ENST00000559340 OR51G2Q8NGK0 314 aa8.04□□□□□ -1.12
LDLR-210ENST00000559340 OR1F12Q8NHA8 337 aa8.04□□□□□ -1.12
LDLR-210ENST00000559340 OTOSQ8NHW6 89 aa8.04□□□□□ -1.12
LDLR-210ENST00000559340 ZNRF4Q8WWF5 429 aa8.04□□□□□ -1.12
LDLR-210ENST00000559340 SPTSSAQ969W0 71 aa8.04□□□□□ -1.12
LDLR-210ENST00000559340 CNBD2Q96M20 576 aa8.04□□□□□ -1.12
LDLR-210ENST00000559340 COG8Q96MW5 612 aa8.04□□□□□ -1.12
LDLR-210ENST00000559340 COQ7Q99807 217 aa8.04□□□□□ -1.12
LDLR-210ENST00000559340 C1QTNF6Q9BXI9 259 aa8.04□□□□□ -1.12
LDLR-210ENST00000559340 YTHDF1Q9BYJ9 559 aaKnown RBP8.04□□□□□ -1.12
LDLR-210ENST00000559340 NIPAL2Q9H841 368 aa8.04□□□□□ -1.12
LDLR-210ENST00000559340 INPP5EQ9NRR6 644 aa8.04□□□□□ -1.12
LDLR-210ENST00000559340 PLCXD1Q9NUJ7 323 aa8.04□□□□□ -1.12
LDLR-210ENST00000559340 MRPS18AQ9NVS2 196 aaKnown RBP8.04□□□□□ -1.12
LDLR-210ENST00000559340 BLOC1S6Q9UL45 172 aa8.04□□□□□ -1.12
LDLR-210ENST00000559340 EXOGQ9Y2C4 368 aaKnown RBP8.04□□□□□ -1.12
LDLR-210ENST00000559340 LHFPL6Q9Y693 200 aa8.04□□□□□ -1.12
LDLR-210ENST00000559340 COL12A1Q99715 3063 aa8.04□□□□□ -1.12
LDLR-210ENST00000559340 ZNF878C9JN71 531 aa8.03□□□□□ -1.12
LDLR-210ENST00000559340 SELENOFO60613 162 aa8.03□□□□□ -1.12
LDLR-210ENST00000559340 FAM20BO75063 409 aa8.03□□□□□ -1.12
LDLR-210ENST00000559340 ZNF254O75437 659 aa8.03□□□□□ -1.12
LDLR-210ENST00000559340 WBP4O75554 376 aaKnown RBP8.03□□□□□ -1.12
LDLR-210ENST00000559340 MRPL3P09001 348 aaKnown RBP8.03□□□□□ -1.12
LDLR-210ENST00000559340 GNAO1P09471 354 aa8.03□□□□□ -1.12
LDLR-210ENST00000559340 TACSTD2P09758 323 aa8.03□□□□□ -1.12
LDLR-210ENST00000559340 CCDC159P0C7I6 412 aa8.03□□□□□ -1.12
LDLR-210ENST00000559340 PATE4P0C8F1 98 aa8.03□□□□□ -1.12
LDLR-210ENST00000559340 DBTP11182 482 aaKnown RBP8.03□□□□□ -1.12
LDLR-210ENST00000559340 ZNF14P17017 642 aaPredicted RBP8.03□□□□□ -1.12
LDLR-210ENST00000559340 ALOX5APP20292 161 aa8.03□□□□□ -1.12
LDLR-210ENST00000559340 TUBG1P23258 451 aa8.03□□□□□ -1.12
LDLR-210ENST00000559340 CD40P25942 277 aa8.03□□□□□ -1.12
LDLR-210ENST00000559340 STOMP27105 288 aa8.03□□□□□ -1.12
LDLR-210ENST00000559340 DCKP27707 260 aa8.03□□□□□ -1.12
LDLR-210ENST00000559340 NAA10P41227 235 aaPredicted RBP8.03□□□□□ -1.12
LDLR-210ENST00000559340 RAD52P43351 418 aa8.03□□□□□ -1.12
LDLR-210ENST00000559340 HTR5AP47898 357 aa8.03□□□□□ -1.12
LDLR-210ENST00000559340 RGS6P49758 472 aa8.03□□□□□ -1.12
LDLR-210ENST00000559340 TPTEP56180 551 aa8.03□□□□□ -1.12
LDLR-210ENST00000559340 CCDC92Q53HC0 331 aaPredicted RBP8.03□□□□□ -1.12
LDLR-210ENST00000559340 RBM48Q5RL73 367 aaKnown RBP8.03□□□□□ -1.12
LDLR-210ENST00000559340 C6orf141Q5SZD1 244 aa8.03□□□□□ -1.12
LDLR-210ENST00000559340 NCMAPQ5T1S8 102 aa8.03□□□□□ -1.12
LDLR-210ENST00000559340 ZNF774Q6NX45 483 aa8.03□□□□□ -1.12
LDLR-210ENST00000559340 PLEKHG7Q6ZR37 379 aa8.03□□□□□ -1.12
LDLR-210ENST00000559340 VASH1Q7L8A9 365 aaPredicted RBP8.03□□□□□ -1.12
LDLR-210ENST00000559340 KCTD20Q7Z5Y7 419 aa8.03□□□□□ -1.12
LDLR-210ENST00000559340 KRT77Q7Z794 578 aa8.03□□□□□ -1.12
LDLR-210ENST00000559340 CDC20BQ86Y33 519 aa8.03□□□□□ -1.12
LDLR-210ENST00000559340 LINC00346Q8IVM7 164 aa8.03□□□□□ -1.12
LDLR-210ENST00000559340 ACBD7Q8N6N7 88 aa8.03□□□□□ -1.12
LDLR-210ENST00000559340 SLC30A7Q8NEW0 376 aa8.03□□□□□ -1.12
LDLR-210ENST00000559340 OR10H4Q8NGA5 316 aa8.03□□□□□ -1.12
LDLR-210ENST00000559340 AKR7LQ8NHP1 331 aa8.03□□□□□ -1.12
LDLR-210ENST00000559340 FGFBP3Q8TAT2 258 aa8.03□□□□□ -1.12
LDLR-210ENST00000559340 CNIH3Q8TBE1 160 aa8.03□□□□□ -1.12
LDLR-210ENST00000559340 HAVCR2Q8TDQ0 301 aa8.03□□□□□ -1.12
LDLR-210ENST00000559340 FBLIM1Q8WUP2 373 aa8.03□□□□□ -1.12
LDLR-210ENST00000559340 HTRA1Q92743 480 aa8.03□□□□□ -1.12
LDLR-210ENST00000559340 MYDGFQ969H8 173 aa8.03□□□□□ -1.12
LDLR-210ENST00000559340 SLAMF6Q96DU3 332 aa8.03□□□□□ -1.12
LDLR-210ENST00000559340 PLPPR2Q96GM1 343 aa8.03□□□□□ -1.12
LDLR-210ENST00000559340 ATF6BQ99941 703 aa8.03□□□□□ -1.12
LDLR-210ENST00000559340 ABHD6Q9BV23 337 aa8.03□□□□□ -1.12
LDLR-210ENST00000559340 MROQ9BYG7 248 aa8.03□□□□□ -1.12
LDLR-210ENST00000559340 WNT5BQ9H1J7 359 aa8.03□□□□□ -1.12
LDLR-210ENST00000559340 ELOVL3Q9HB03 270 aa8.03□□□□□ -1.12
LDLR-210ENST00000559340 ADGRL4Q9HBW9 690 aa8.03□□□□□ -1.12
LDLR-210ENST00000559340 FGF20Q9NP95 211 aaPredicted RBP8.03□□□□□ -1.12
LDLR-210ENST00000559340 TUBG2Q9NRH3 451 aa8.03□□□□□ -1.12
LDLR-210ENST00000559340 CENPMQ9NSP4 180 aa8.03□□□□□ -1.12
LDLR-210ENST00000559340 ZNF224Q9NZL3 707 aa8.03□□□□□ -1.12
LDLR-210ENST00000559340 CNOT2Q9NZN8 540 aaKnown RBP8.03□□□□□ -1.12
LDLR-210ENST00000559340 LRRC42Q9Y546 428 aa8.03□□□□□ -1.12
LDLR-210ENST00000559340 MYO9AB2RTY4 2548 aa8.02□□□□□ -1.12
LDLR-210ENST00000559340 IGHV1-18A0A0C4DH31 117 aa8.02□□□□□ -1.13
LDLR-210ENST00000559340 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.02□□□□□ -1.13
LDLR-210ENST00000559340 DAPL1A0PJW8 107 aa8.02□□□□□ -1.13
LDLR-210ENST00000559340 A6NNC1 897 aa8.02□□□□□ -1.13
LDLR-210ENST00000559340 J3QW42 95 aa8.02□□□□□ -1.13
LDLR-210ENST00000559340 RER1O15258 196 aa8.02□□□□□ -1.13
LDLR-210ENST00000559340 SYNGR3O43761 229 aa8.02□□□□□ -1.13
LDLR-210ENST00000559340 KRT8P05787 483 aa8.02□□□□□ -1.13
LDLR-210ENST00000559340 H2BFMP0C1H6 154 aa8.02□□□□□ -1.13
LDLR-210ENST00000559340 CECR9P0C854 216 aa8.02□□□□□ -1.13
LDLR-210ENST00000559340 PIPP12273 146 aaPredicted RBP8.02□□□□□ -1.13
LDLR-210ENST00000559340 MYL12AP19105 171 aa8.02□□□□□ -1.13
LDLR-210ENST00000559340 CCNOP22674 350 aa8.02□□□□□ -1.13
LDLR-210ENST00000559340 APEX1P27695 318 aaKnown RBP8.02□□□□□ -1.13
LDLR-210ENST00000559340 HSD11B1P28845 292 aa8.02□□□□□ -1.13
LDLR-210ENST00000559340 PCSK6P29122 969 aa8.02□□□□□ -1.13
LDLR-210ENST00000559340 SSTR2P30874 369 aa8.02□□□□□ -1.13
LDLR-210ENST00000559340 RIDAP52758 137 aaKnown RBP8.02□□□□□ -1.13
LDLR-210ENST00000559340 RPS23P62266 143 aaKnown RBP8.02□□□□□ -1.13
LDLR-210ENST00000559340 NAAAQ02083 359 aa8.02□□□□□ -1.13
LDLR-210ENST00000559340 ZNF91Q05481 1191 aa8.02□□□□□ -1.13
LDLR-210ENST00000559340 EGR3Q06889 387 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms