RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 GPR6P46095 362 aaPredicted RBP13.67□□□□□ -0.22
CCDC88C-209ENST00000554872 RGS6P49758 472 aa13.67□□□□□ -0.22
CCDC88C-209ENST00000554872 ZNF81P51508 661 aa13.67□□□□□ -0.22
CCDC88C-209ENST00000554872 CDH15P55291 814 aa13.67□□□□□ -0.22
CCDC88C-209ENST00000554872 MS4A2Q01362 244 aa13.67□□□□□ -0.22
CCDC88C-209ENST00000554872 TRAP1Q12931 704 aaKnown RBP13.67□□□□□ -0.22
CCDC88C-209ENST00000554872 FAM98BQ52LJ0 330 aaKnown RBP13.67□□□□□ -0.22
CCDC88C-209ENST00000554872 LEG1Q6P5S2 330 aa13.67□□□□□ -0.22
CCDC88C-209ENST00000554872 RASSF6Q6ZTQ3 369 aa13.67□□□□□ -0.22
CCDC88C-209ENST00000554872 JAZF1Q86VZ6 243 aa13.67□□□□□ -0.22
CCDC88C-209ENST00000554872 OR6V1Q8N148 313 aa13.67□□□□□ -0.22
CCDC88C-209ENST00000554872 GJC3Q8NFK1 279 aa13.67□□□□□ -0.22
CCDC88C-209ENST00000554872 SAMD8Q96LT4 415 aa13.67□□□□□ -0.22
CCDC88C-209ENST00000554872 COQ7Q99807 217 aa13.67□□□□□ -0.22
CCDC88C-209ENST00000554872 IFT27Q9BW83 186 aa13.67□□□□□ -0.22
CCDC88C-209ENST00000554872 DGCR6LQ9BY27 220 aa13.67□□□□□ -0.22
CCDC88C-209ENST00000554872 ZNF275Q9NSD4 429 aaPredicted RBP13.67□□□□□ -0.22
CCDC88C-209ENST00000554872 PLEK2Q9NYT0 353 aa13.67□□□□□ -0.22
CCDC88C-209ENST00000554872 KCNG2Q9UJ96 466 aa13.67□□□□□ -0.22
CCDC88C-209ENST00000554872 ZDHHC8Q9ULC8 765 aa13.67□□□□□ -0.22
CCDC88C-209ENST00000554872 B9D1Q9UPM9 204 aa13.67□□□□□ -0.22
CCDC88C-209ENST00000554872 LHFPL6Q9Y693 200 aa13.67□□□□□ -0.22
CCDC88C-209ENST00000554872 FBN1P35555 2871 aaKnown RBP13.66□□□□□ -0.22
CCDC88C-209ENST00000554872 PLSCR5A0PG75 271 aa13.66□□□□□ -0.22
CCDC88C-209ENST00000554872 LRP5LA4QPB2 252 aa13.66□□□□□ -0.22
CCDC88C-209ENST00000554872 ARRDC5A6NEK1 342 aa13.66□□□□□ -0.22
CCDC88C-209ENST00000554872 KIAA1324LA8MWY0 1029 aaPredicted RBP13.66□□□□□ -0.22
CCDC88C-209ENST00000554872 BHLHE40O14503 412 aa13.66□□□□□ -0.22
CCDC88C-209ENST00000554872 ACOT8O14734 319 aa13.66□□□□□ -0.22
CCDC88C-209ENST00000554872 MPZL1O95297 269 aa13.66□□□□□ -0.22
CCDC88C-209ENST00000554872 IFNA2P01563 188 aa13.66□□□□□ -0.22
CCDC88C-209ENST00000554872 RAP2AP10114 183 aa13.66□□□□□ -0.22
CCDC88C-209ENST00000554872 KITLGP21583 273 aa13.66□□□□□ -0.22
CCDC88C-209ENST00000554872 IGFBP5P24593 272 aa13.66□□□□□ -0.22
CCDC88C-209ENST00000554872 COL8A2P25067 703 aa13.66□□□□□ -0.22
CCDC88C-209ENST00000554872 CCL8P80075 99 aa13.66□□□□□ -0.22
CCDC88C-209ENST00000554872 TRIP10Q15642 601 aa13.66□□□□□ -0.22
CCDC88C-209ENST00000554872 KRTAP27-1Q3LI81 207 aa13.66□□□□□ -0.22
CCDC88C-209ENST00000554872 CCDC92Q53HC0 331 aaPredicted RBP13.66□□□□□ -0.22
CCDC88C-209ENST00000554872 OR2T5Q6IEZ7 315 aa13.66□□□□□ -0.22
CCDC88C-209ENST00000554872 CD300LDQ6UXZ3 194 aa13.66□□□□□ -0.22
CCDC88C-209ENST00000554872 LINC01356Q8N9X3 169 aa13.66□□□□□ -0.22
CCDC88C-209ENST00000554872 ICA1LQ8NDH6 482 aa13.66□□□□□ -0.22
CCDC88C-209ENST00000554872 OR9Q2Q8NGE9 314 aa13.66□□□□□ -0.22
CCDC88C-209ENST00000554872 OR52L1Q8NGH7 329 aa13.66□□□□□ -0.22
CCDC88C-209ENST00000554872 OR2T29Q8NH02 315 aa13.66□□□□□ -0.22
CCDC88C-209ENST00000554872 OR1F12Q8NHA8 337 aa13.66□□□□□ -0.22
CCDC88C-209ENST00000554872 NMNAT3Q96T66 252 aa13.66□□□□□ -0.22
CCDC88C-209ENST00000554872 DDOQ99489 341 aa13.66□□□□□ -0.22
CCDC88C-209ENST00000554872 SOX7Q9BT81 388 aa13.66□□□□□ -0.22
CCDC88C-209ENST00000554872 SAP30LQ9HAJ7 183 aa13.66□□□□□ -0.22
CCDC88C-209ENST00000554872 IGHV1-69-2A0A0G2JMI3 117 aa13.65□□□□□ -0.22
CCDC88C-209ENST00000554872 AQP12BA6NM10 295 aa13.65□□□□□ -0.22
CCDC88C-209ENST00000554872 CCNB2O95067 398 aa13.65□□□□□ -0.22
CCDC88C-209ENST00000554872 IGHV1-46P01743 117 aa13.65□□□□□ -0.22
CCDC88C-209ENST00000554872 NOS3P29474 1203 aa13.65□□□□□ -0.22
CCDC88C-209ENST00000554872 IL2RGP31785 369 aa13.65□□□□□ -0.22
CCDC88C-209ENST00000554872 PSG7Q13046 419 aa13.65□□□□□ -0.22
CCDC88C-209ENST00000554872 MICAQ29983 383 aa13.65□□□□□ -0.22
CCDC88C-209ENST00000554872 ALKBH6Q3KRA9 238 aa13.65□□□□□ -0.22
CCDC88C-209ENST00000554872 SLC36A3Q495N2 470 aa13.65□□□□□ -0.22
CCDC88C-209ENST00000554872 SPATA46Q5T0L3 261 aa13.65□□□□□ -0.22
CCDC88C-209ENST00000554872 TRPM8Q7Z2W7 1104 aa13.65□□□□□ -0.22
CCDC88C-209ENST00000554872 AQP12AQ8IXF9 295 aa13.65□□□□□ -0.22
CCDC88C-209ENST00000554872 LNX2Q8N448 690 aa13.65□□□□□ -0.22
CCDC88C-209ENST00000554872 OR4K13Q8NH42 304 aa13.65□□□□□ -0.22
CCDC88C-209ENST00000554872 ELMOD3Q96FG2 381 aa13.65□□□□□ -0.22
CCDC88C-209ENST00000554872 TSSK2Q96PF2 358 aa13.65□□□□□ -0.22
CCDC88C-209ENST00000554872 SHARPINQ9H0F6 387 aa13.65□□□□□ -0.22
CCDC88C-209ENST00000554872 REEP1Q9H902 201 aa13.65□□□□□ -0.22
CCDC88C-209ENST00000554872 BAIAP2Q9UQB8 552 aa13.65□□□□□ -0.22
CCDC88C-209ENST00000554872 SVEP1Q4LDE5 3571 aa13.65□□□□□ -0.23
CCDC88C-209ENST00000554872 OR6C68A6NDL8 312 aa13.64□□□□□ -0.23
CCDC88C-209ENST00000554872 ZSCAN5BA6NJL1 495 aa13.64□□□□□ -0.23
CCDC88C-209ENST00000554872 B4DSR2 109 aa13.64□□□□□ -0.23
CCDC88C-209ENST00000554872 RER1O15258 196 aa13.64□□□□□ -0.23
CCDC88C-209ENST00000554872 TGFAP01135 160 aa13.64□□□□□ -0.23
CCDC88C-209ENST00000554872 RAC2P15153 192 aa13.64□□□□□ -0.23
CCDC88C-209ENST00000554872 HNF1AP20823 631 aa13.64□□□□□ -0.23
CCDC88C-209ENST00000554872 PCMT1P22061 227 aa13.64□□□□□ -0.23
CCDC88C-209ENST00000554872 DVL1P1P54792 670 aaPredicted RBP13.64□□□□□ -0.23
CCDC88C-209ENST00000554872 ECH1Q13011 328 aa13.64□□□□□ -0.23
CCDC88C-209ENST00000554872 CDK5R2Q13319 367 aa13.64□□□□□ -0.23
CCDC88C-209ENST00000554872 DNAL1Q4LDG9 190 aa13.64□□□□□ -0.23
CCDC88C-209ENST00000554872 SLC18B1Q6NT16 456 aa13.64□□□□□ -0.23
CCDC88C-209ENST00000554872 FBXW12Q6X9E4 464 aa13.64□□□□□ -0.23
CCDC88C-209ENST00000554872 COLCA1Q6ZS62 124 aa13.64□□□□□ -0.23
CCDC88C-209ENST00000554872 CLDND2Q8NHS1 167 aa13.64□□□□□ -0.23
CCDC88C-209ENST00000554872 GTF3AQ92664 365 aaKnown RBP13.64□□□□□ -0.23
CCDC88C-209ENST00000554872 HAVCR1Q96D42 359 aa13.64□□□□□ -0.23
CCDC88C-209ENST00000554872 BEX2Q9BXY8 128 aa13.64□□□□□ -0.23
CCDC88C-209ENST00000554872 EGLN1Q9GZT9 426 aa13.64□□□□□ -0.23
CCDC88C-209ENST00000554872 RERGLQ9H628 205 aa13.64□□□□□ -0.23
CCDC88C-209ENST00000554872 EGLN3Q9H6Z9 239 aa13.64□□□□□ -0.23
CCDC88C-209ENST00000554872 RPRD1BQ9NQG5 326 aaKnown RBP13.64□□□□□ -0.23
CCDC88C-209ENST00000554872 DECR2Q9NUI1 292 aa13.64□□□□□ -0.23
CCDC88C-209ENST00000554872 CYB5R1Q9UHQ9 305 aa13.64□□□□□ -0.23
CCDC88C-209ENST00000554872 PURGQ9UJV8 347 aaKnown RBP13.64□□□□□ -0.23
CCDC88C-209ENST00000554872 POLR1DQ9Y2S0 133 aa13.64□□□□□ -0.23
CCDC88C-209ENST00000554872 SAMHD1Q9Y3Z3 626 aaKnown RBP13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms