RNA–Protein interactions for RNA: ENST00000553324.5

SHMT2-204, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-204ENST00000553324 TPK1Q9H3S4 243 aa13.14□□□□□ -0.31
SHMT2-204ENST00000553324 VNN3Q9NY84 501 aa13.14□□□□□ -0.31
SHMT2-204ENST00000553324 NKIRAS2Q9NYR9 191 aa13.14□□□□□ -0.31
SHMT2-204ENST00000553324 PDP1Q9P0J1 537 aaPredicted RBP13.14□□□□□ -0.31
SHMT2-204ENST00000553324 MYEF2Q9P2K5 600 aaKnown RBP13.14□□□□□ -0.31
SHMT2-204ENST00000553324 DNAJB9Q9UBS3 223 aa13.14□□□□□ -0.31
SHMT2-204ENST00000553324 NIPBLQ6KC79 2804 aaeCLIP13.14□□□□□ -0.31
SHMT2-204ENST00000553324 SETD2Q9BYW2 2564 aaPredicted RBP13.13□□□□□ -0.31
SHMT2-204ENST00000553324 A0A096LNT2 108 aa13.13□□□□□ -0.31
SHMT2-204ENST00000553324 PLSCR5A0PG75 271 aa13.13□□□□□ -0.31
SHMT2-204ENST00000553324 RER1O15258 196 aa13.13□□□□□ -0.31
SHMT2-204ENST00000553324 CD5LO43866 347 aa13.13□□□□□ -0.31
SHMT2-204ENST00000553324 FKBP6O75344 327 aa13.13□□□□□ -0.31
SHMT2-204ENST00000553324 NAT2P11245 290 aa13.13□□□□□ -0.31
SHMT2-204ENST00000553324 ANXA8P13928 327 aa13.13□□□□□ -0.31
SHMT2-204ENST00000553324 ZNF823P16415 610 aa13.13□□□□□ -0.31
SHMT2-204ENST00000553324 BLVRAP53004 296 aa13.13□□□□□ -0.31
SHMT2-204ENST00000553324 ERVS71-1P61550 626 aa13.13□□□□□ -0.31
SHMT2-204ENST00000553324 HIST1H3AP68431 136 aa13.13□□□□□ -0.31
SHMT2-204ENST00000553324 CBX1P83916 185 aa13.13□□□□□ -0.31
SHMT2-204ENST00000553324 ECH1Q13011 328 aa13.13□□□□□ -0.31
SHMT2-204ENST00000553324 TMEM249Q2WGJ8 235 aa13.13□□□□□ -0.31
SHMT2-204ENST00000553324 CCDC92Q53HC0 331 aaPredicted RBP13.13□□□□□ -0.31
SHMT2-204ENST00000553324 ELFN2Q5R3F8 820 aa13.13□□□□□ -0.31
SHMT2-204ENST00000553324 HIST2H3PS2Q5TEC6 136 aa13.13□□□□□ -0.31
SHMT2-204ENST00000553324 HIST2H3AQ71DI3 136 aa13.13□□□□□ -0.31
SHMT2-204ENST00000553324 OR5L1Q8NGL2 311 aa13.13□□□□□ -0.31
SHMT2-204ENST00000553324 SLC25A40Q8TBP6 338 aa13.13□□□□□ -0.31
SHMT2-204ENST00000553324 TEX47Q8TBZ9 253 aa13.13□□□□□ -0.31
SHMT2-204ENST00000553324 RDH5Q92781 318 aa13.13□□□□□ -0.31
SHMT2-204ENST00000553324 NRBF2Q96F24 287 aa13.13□□□□□ -0.31
SHMT2-204ENST00000553324 DDOQ99489 341 aa13.13□□□□□ -0.31
SHMT2-204ENST00000553324 COQ7Q99807 217 aa13.13□□□□□ -0.31
SHMT2-204ENST00000553324 PLA2G12AQ9BZM1 189 aa13.13□□□□□ -0.31
SHMT2-204ENST00000553324 OR2J1Q9GZK6 312 aa13.13□□□□□ -0.31
SHMT2-204ENST00000553324 HDHD2Q9H0R4 259 aa13.13□□□□□ -0.31
SHMT2-204ENST00000553324 GRIP1Q9Y3R0 1128 aa13.13□□□□□ -0.31
SHMT2-204ENST00000553324 H3BN98 237 aa13.12□□□□□ -0.31
SHMT2-204ENST00000553324 DEAF1O75398 565 aaPredicted RBP13.12□□□□□ -0.31
SHMT2-204ENST00000553324 NGFP01138 241 aa13.12□□□□□ -0.31
SHMT2-204ENST00000553324 TFP02787 698 aa13.12□□□□□ -0.31
SHMT2-204ENST00000553324 SLC25A1P53007 311 aa13.12□□□□□ -0.31
SHMT2-204ENST00000553324 TMEM33P57088 247 aa13.12□□□□□ -0.31
SHMT2-204ENST00000553324 MAD2L1BPQ15013 274 aaPredicted RBP13.12□□□□□ -0.31
SHMT2-204ENST00000553324 ZMAT1Q5H9K5 638 aa13.12□□□□□ -0.31
SHMT2-204ENST00000553324 ZNF362Q5T0B9 420 aaPredicted RBP13.12□□□□□ -0.31
SHMT2-204ENST00000553324 PROKR2Q8NFJ6 384 aa13.12□□□□□ -0.31
SHMT2-204ENST00000553324 OR8D4Q8NGM9 314 aa13.12□□□□□ -0.31
SHMT2-204ENST00000553324 PTP4A1Q93096 173 aa13.12□□□□□ -0.31
SHMT2-204ENST00000553324 DIRC2Q96SL1 478 aa13.12□□□□□ -0.31
SHMT2-204ENST00000553324 NIPSNAP1Q9BPW8 284 aa13.12□□□□□ -0.31
SHMT2-204ENST00000553324 TEX12Q9BXU0 123 aa13.12□□□□□ -0.31
SHMT2-204ENST00000553324 CHODLQ9H9P2 273 aa13.12□□□□□ -0.31
SHMT2-204ENST00000553324 DECR2Q9NUI1 292 aa13.12□□□□□ -0.31
SHMT2-204ENST00000553324 CYB5R1Q9UHQ9 305 aa13.12□□□□□ -0.31
SHMT2-204ENST00000553324 LHFPL6Q9Y693 200 aa13.12□□□□□ -0.31
SHMT2-204ENST00000553324 CSPG4Q6UVK1 2322 aa13.12□□□□□ -0.31
SHMT2-204ENST00000553324 RIIAD1A6NNX1 92 aa13.11□□□□□ -0.31
SHMT2-204ENST00000553324 SOX14O95416 240 aa13.11□□□□□ -0.31
SHMT2-204ENST00000553324 GPANK1O95872 356 aa13.11□□□□□ -0.31
SHMT2-204ENST00000553324 ZNF3P17036 446 aa13.11□□□□□ -0.31
SHMT2-204ENST00000553324 ACHEP22303 614 aa13.11□□□□□ -0.31
SHMT2-204ENST00000553324 FMO3P31513 532 aa13.11□□□□□ -0.31
SHMT2-204ENST00000553324 GZMKP49863 264 aa13.11□□□□□ -0.31
SHMT2-204ENST00000553324 ZNF81P51508 661 aa13.11□□□□□ -0.31
SHMT2-204ENST00000553324 RIN1Q13671 783 aa13.11□□□□□ -0.31
SHMT2-204ENST00000553324 GGTLC2Q14390 218 aa13.11□□□□□ -0.31
SHMT2-204ENST00000553324 MEP1BQ16820 701 aa13.11□□□□□ -0.31
SHMT2-204ENST00000553324 ALKBH6Q3KRA9 238 aa13.11□□□□□ -0.31
SHMT2-204ENST00000553324 SPATA46Q5T0L3 261 aa13.11□□□□□ -0.31
SHMT2-204ENST00000553324 CYB5R2Q6BCY4 276 aa13.11□□□□□ -0.31
SHMT2-204ENST00000553324 RFPL4BQ6ZWI9 263 aa13.11□□□□□ -0.31
SHMT2-204ENST00000553324 ZSCAN2Q7Z7L9 614 aaPredicted RBP13.11□□□□□ -0.31
SHMT2-204ENST00000553324 SLC37A3Q8NCC5 494 aa13.11□□□□□ -0.31
SHMT2-204ENST00000553324 DNAJC9Q8WXX5 260 aa13.11□□□□□ -0.31
SHMT2-204ENST00000553324 PITX2Q99697 317 aa13.11□□□□□ -0.31
SHMT2-204ENST00000553324 RBM4Q9BWF3 364 aaKnown RBP13.11□□□□□ -0.31
SHMT2-204ENST00000553324 BPESC1Q9GZL8 116 aa13.11□□□□□ -0.31
SHMT2-204ENST00000553324 CMC2Q9NRP2 79 aa13.11□□□□□ -0.31
SHMT2-204ENST00000553324 ZDHHC8Q9ULC8 765 aa13.11□□□□□ -0.31
SHMT2-204ENST00000553324 HIVEP2P31629 2446 aa13.1□□□□□ -0.31
SHMT2-204ENST00000553324 HPXP02790 462 aa13.1□□□□□ -0.31
SHMT2-204ENST00000553324 HMGN1P05114 100 aa13.1□□□□□ -0.31
SHMT2-204ENST00000553324 OSMP13725 252 aa13.1□□□□□ -0.31
SHMT2-204ENST00000553324 ZNF23P17027 643 aa13.1□□□□□ -0.31
SHMT2-204ENST00000553324 HOXB4P17483 251 aaPredicted RBP13.1□□□□□ -0.31
SHMT2-204ENST00000553324 GGT2P36268 569 aa13.1□□□□□ -0.31
SHMT2-204ENST00000553324 SLC18B1Q6NT16 456 aa13.1□□□□□ -0.31
SHMT2-204ENST00000553324 SLC27A4Q6P1M0 643 aa13.1□□□□□ -0.31
SHMT2-204ENST00000553324 SHQ1Q6PI26 577 aaKnown RBP13.1□□□□□ -0.31
SHMT2-204ENST00000553324 CYB561A3Q8NBI2 242 aa13.1□□□□□ -0.31
SHMT2-204ENST00000553324 OR4Q3Q8NH05 313 aa13.1□□□□□ -0.31
SHMT2-204ENST00000553324 APOBEC3DQ96AK3 386 aaPredicted RBP13.1□□□□□ -0.31
SHMT2-204ENST00000553324 EGLN1Q9GZT9 426 aa13.1□□□□□ -0.31
SHMT2-204ENST00000553324 ARMC1Q9NVT9 282 aa13.1□□□□□ -0.31
SHMT2-204ENST00000553324 STARD10Q9Y365 291 aa13.1□□□□□ -0.31
SHMT2-204ENST00000553324 C2CD3Q4AC94 2353 aa13.1□□□□□ -0.31
SHMT2-204ENST00000553324 RTTNQ86VV8 2226 aa13.09□□□□□ -0.31
SHMT2-204ENST00000553324 TPD52L2O43399 206 aaKnown RBP13.09□□□□□ -0.31
SHMT2-204ENST00000553324 TIMM8AO60220 97 aaPredicted RBP13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms