RNA–Protein interactions for RNA: ENST00000546378.1

HOXC11-202, Transcript of homeobox C11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC11, Length 3,261 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-202ENST00000546378 ZNF425Q6IV72 752 aa13.21□□□□□ -0.3
HOXC11-202ENST00000546378 BRICD5Q6PL45 260 aa13.21□□□□□ -0.3
HOXC11-202ENST00000546378 SLC29A4Q7RTT9 530 aa13.21□□□□□ -0.3
HOXC11-202ENST00000546378 HLA-CQ95604 372 aa13.21□□□□□ -0.3
HOXC11-202ENST00000546378 C19orf43Q9BQ61 176 aa13.21□□□□□ -0.3
HOXC11-202ENST00000546378 OR10A5Q9H207 317 aa13.21□□□□□ -0.3
HOXC11-202ENST00000546378 RPS10P5Q9NQ39 176 aa13.21□□□□□ -0.3
HOXC11-202ENST00000546378 MTFP1Q9UDX5 166 aa13.21□□□□□ -0.3
HOXC11-202ENST00000546378 SLCO1B1Q9Y6L6 691 aa13.21□□□□□ -0.3
HOXC11-202ENST00000546378 TTC28Q96AY4 2481 aa13.2□□□□□ -0.3
HOXC11-202ENST00000546378 ZNF98A6NK75 572 aa13.2□□□□□ -0.3
HOXC11-202ENST00000546378 DNASE2O00115 360 aaPredicted RBP13.2□□□□□ -0.3
HOXC11-202ENST00000546378 CD14P08571 375 aa13.2□□□□□ -0.3
HOXC11-202ENST00000546378 RNH1P13489 461 aaKnown RBP13.2□□□□□ -0.3
HOXC11-202ENST00000546378 RCC1P18754 421 aaPredicted RBP13.2□□□□□ -0.3
HOXC11-202ENST00000546378 CCINQ13939 588 aa13.2□□□□□ -0.3
HOXC11-202ENST00000546378 PDCD1Q15116 288 aa13.2□□□□□ -0.3
HOXC11-202ENST00000546378 ATPAF1Q5TC12 328 aaPredicted RBP13.2□□□□□ -0.3
HOXC11-202ENST00000546378 CD300LFQ8TDQ1 290 aa13.2□□□□□ -0.3
HOXC11-202ENST00000546378 TSPAN32Q96QS1 320 aa13.2□□□□□ -0.3
HOXC11-202ENST00000546378 SOX7Q9BT81 388 aa13.2□□□□□ -0.3
HOXC11-202ENST00000546378 C8orf33Q9H7E9 229 aaPredicted RBP13.2□□□□□ -0.3
HOXC11-202ENST00000546378 KIR3DX1Q9H7L2 352 aa13.2□□□□□ -0.3
HOXC11-202ENST00000546378 SLC2A4RGQ9NR83 387 aa13.2□□□□□ -0.3
HOXC11-202ENST00000546378 GMEB2Q9UKD1 530 aa13.2□□□□□ -0.3
HOXC11-202ENST00000546378 CSF1P09603 554 aa13.2□□□□□ -0.3
HOXC11-202ENST00000546378 CNR1P21554 472 aa13.2□□□□□ -0.3
HOXC11-202ENST00000546378 HHEXQ03014 270 aa13.2□□□□□ -0.3
HOXC11-202ENST00000546378 PMPCAQ10713 525 aa13.2□□□□□ -0.3
HOXC11-202ENST00000546378 VWA2Q5GFL6 755 aa13.2□□□□□ -0.3
HOXC11-202ENST00000546378 FJX1Q86VR8 437 aa13.2□□□□□ -0.3
HOXC11-202ENST00000546378 TMEM17Q86X19 198 aa13.2□□□□□ -0.3
HOXC11-202ENST00000546378 SPAG16Q8N0X2 631 aa13.2□□□□□ -0.3
HOXC11-202ENST00000546378 CA13Q8N1Q1 262 aa13.2□□□□□ -0.3
HOXC11-202ENST00000546378 OR13H1Q8NG92 308 aa13.2□□□□□ -0.3
HOXC11-202ENST00000546378 DUSP22Q9NRW4 184 aa13.2□□□□□ -0.3
HOXC11-202ENST00000546378 TMEM269A0A1B0GVZ9 245 aa13.19□□□□□ -0.3
HOXC11-202ENST00000546378 FAM221AA4D161 298 aa13.19□□□□□ -0.3
HOXC11-202ENST00000546378 THBS1P07996 1170 aa13.19□□□□□ -0.3
HOXC11-202ENST00000546378 RAB40ALP0C0E4 278 aa13.19□□□□□ -0.3
HOXC11-202ENST00000546378 CTLA4P16410 223 aa13.19□□□□□ -0.3
HOXC11-202ENST00000546378 ZNF823P16415 610 aa13.19□□□□□ -0.3
HOXC11-202ENST00000546378 RAB40AQ8WXH6 277 aa13.19□□□□□ -0.3
HOXC11-202ENST00000546378 JSRP1Q96MG2 331 aaPredicted RBP13.19□□□□□ -0.3
HOXC11-202ENST00000546378 CDX2Q99626 313 aaPredicted RBP13.19□□□□□ -0.3
HOXC11-202ENST00000546378 NICN1Q9BSH3 213 aa13.19□□□□□ -0.3
HOXC11-202ENST00000546378 LSM5Q9Y4Y9 91 aaKnown RBP13.19□□□□□ -0.3
HOXC11-202ENST00000546378 TRAV14DV4A0A0A6YYC5 116 aa13.19□□□□□ -0.3
HOXC11-202ENST00000546378 A0A1B0GW55 424 aa13.19□□□□□ -0.3
HOXC11-202ENST00000546378 OR2M5A3KFT3 312 aa13.19□□□□□ -0.3
HOXC11-202ENST00000546378 NAP1L6A6NFF2 107 aa13.19□□□□□ -0.3
HOXC11-202ENST00000546378 XRCC3O43542 346 aa13.19□□□□□ -0.3
HOXC11-202ENST00000546378 TBX19O60806 448 aa13.19□□□□□ -0.3
HOXC11-202ENST00000546378 DUX4L2P0CJ85 424 aa13.19□□□□□ -0.3
HOXC11-202ENST00000546378 DUX4L3P0CJ86 424 aa13.19□□□□□ -0.3
HOXC11-202ENST00000546378 DUX4L4P0CJ87 422 aa13.19□□□□□ -0.3
HOXC11-202ENST00000546378 DUX4L5P0CJ88 424 aa13.19□□□□□ -0.3
HOXC11-202ENST00000546378 DUX4L6P0CJ89 424 aa13.19□□□□□ -0.3
HOXC11-202ENST00000546378 DUX4L7P0CJ90 424 aa13.19□□□□□ -0.3
HOXC11-202ENST00000546378 IL12BP29460 328 aa13.19□□□□□ -0.3
HOXC11-202ENST00000546378 KIR3DL2P43630 455 aa13.19□□□□□ -0.3
HOXC11-202ENST00000546378 ARL4DP49703 201 aa13.19□□□□□ -0.3
HOXC11-202ENST00000546378 ELAVL1Q15717 326 aaKnown RBP13.19□□□□□ -0.3
HOXC11-202ENST00000546378 ACKR1Q16570 336 aa13.19□□□□□ -0.3
HOXC11-202ENST00000546378 AWAT2Q6E213 333 aa13.19□□□□□ -0.3
HOXC11-202ENST00000546378 DPY19L2P2Q6ZN68 376 aa13.19□□□□□ -0.3
HOXC11-202ENST00000546378 ZNF550Q7Z398 422 aa13.19□□□□□ -0.3
HOXC11-202ENST00000546378 DCXRQ7Z4W1 244 aa13.19□□□□□ -0.3
HOXC11-202ENST00000546378 LDLRAD3Q86YD5 345 aa13.19□□□□□ -0.3
HOXC11-202ENST00000546378 TSTD1Q8NFU3 115 aa13.19□□□□□ -0.3
HOXC11-202ENST00000546378 OR51F2Q8NH61 342 aa13.19□□□□□ -0.3
HOXC11-202ENST00000546378 GABRG3Q99928 467 aa13.19□□□□□ -0.3
HOXC11-202ENST00000546378 TMPRSS13Q9BYE2 586 aa13.19□□□□□ -0.3
HOXC11-202ENST00000546378 LDAHQ9H6V9 325 aa13.19□□□□□ -0.3
HOXC11-202ENST00000546378 DUX4Q9UBX2 424 aa13.19□□□□□ -0.3
HOXC11-202ENST00000546378 DMDP11532 3685 aa13.19□□□□□ -0.3
HOXC11-202ENST00000546378 ZNF407Q9C0G0 2248 aa13.19□□□□□ -0.3
HOXC11-202ENST00000546378 PLRG1O43660 514 aaKnown RBP13.19□□□□□ -0.3
HOXC11-202ENST00000546378 STK17BO94768 372 aa13.19□□□□□ -0.3
HOXC11-202ENST00000546378 LYPD3O95274 346 aa13.19□□□□□ -0.3
HOXC11-202ENST00000546378 SEMA4FO95754 770 aa13.19□□□□□ -0.3
HOXC11-202ENST00000546378 S1PR1P21453 382 aa13.19□□□□□ -0.3
HOXC11-202ENST00000546378 MAPK3P27361 379 aaPredicted RBP13.19□□□□□ -0.3
HOXC11-202ENST00000546378 PAPD4Q6PIY7 484 aaKnown RBP13.19□□□□□ -0.3
HOXC11-202ENST00000546378 ZNF704Q6ZNC4 412 aaPredicted RBP13.19□□□□□ -0.3
HOXC11-202ENST00000546378 LINC00518Q8N0U6 118 aa13.19□□□□□ -0.3
HOXC11-202ENST00000546378 CCDC107Q8WV48 283 aa13.19□□□□□ -0.3
HOXC11-202ENST00000546378 TOMM40LQ969M1 308 aa13.19□□□□□ -0.3
HOXC11-202ENST00000546378 ANKRD9Q96BM1 317 aaPredicted RBP13.19□□□□□ -0.3
HOXC11-202ENST00000546378 C14orf79Q96F83 325 aa13.19□□□□□ -0.3
HOXC11-202ENST00000546378 RPH3AQ9Y2J0 694 aaPredicted RBP13.19□□□□□ -0.3
HOXC11-202ENST00000546378 CLDN4O14493 209 aa13.18□□□□□ -0.3
HOXC11-202ENST00000546378 ICOSLGO75144 302 aa13.18□□□□□ -0.3
HOXC11-202ENST00000546378 UPK3AO75631 287 aa13.18□□□□□ -0.3
HOXC11-202ENST00000546378 HCKP08631 526 aa13.18□□□□□ -0.3
HOXC11-202ENST00000546378 ERGP11308 486 aa13.18□□□□□ -0.3
HOXC11-202ENST00000546378 OR4D6Q8NGJ1 314 aa13.18□□□□□ -0.3
HOXC11-202ENST00000546378 NIT2Q9NQR4 276 aa13.18□□□□□ -0.3
HOXC11-202ENST00000546378 GPN3Q9UHW5 284 aaPredicted RBP13.18□□□□□ -0.3
HOXC11-202ENST00000546378 PILRAQ9UKJ1 303 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms