RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 MTX3Q5HYI7 312 aa7.15□□□□□ -1.26
USP28-215ENST00000545608 OTPQ5XKR4 325 aa7.15□□□□□ -1.26
USP28-215ENST00000545608 TBPL2Q6SJ96 375 aa7.15□□□□□ -1.26
USP28-215ENST00000545608 UNQ6126/PRO20091Q6UXV3 157 aa7.15□□□□□ -1.26
USP28-215ENST00000545608 VTCN1Q7Z7D3 282 aa7.15□□□□□ -1.26
USP28-215ENST00000545608 C1orf174Q8IYL3 243 aa7.15□□□□□ -1.26
USP28-215ENST00000545608 OFCC1Q8IZS5 231 aa7.15□□□□□ -1.26
USP28-215ENST00000545608 TEX29Q8N6K0 151 aa7.15□□□□□ -1.26
USP28-215ENST00000545608 ZDHHC22Q8N966 263 aa7.15□□□□□ -1.26
USP28-215ENST00000545608 PCYOX1LQ8NBM8 494 aa7.15□□□□□ -1.26
USP28-215ENST00000545608 OR13C2Q8NGS9 318 aa7.15□□□□□ -1.26
USP28-215ENST00000545608 NANPQ8TBE9 248 aa7.15□□□□□ -1.26
USP28-215ENST00000545608 FNDC8Q8TC99 324 aa7.15□□□□□ -1.26
USP28-215ENST00000545608 C22orf15Q8WYQ4 148 aa7.15□□□□□ -1.26
USP28-215ENST00000545608 GCDHQ92947 438 aaPredicted RBP7.15□□□□□ -1.26
USP28-215ENST00000545608 DCLRE1CQ96SD1 692 aaKnown RBP7.15□□□□□ -1.26
USP28-215ENST00000545608 CCT8L2Q96SF2 557 aa7.15□□□□□ -1.26
USP28-215ENST00000545608 SLC6A7Q99884 636 aa7.15□□□□□ -1.26
USP28-215ENST00000545608 EGLN1Q9GZT9 426 aa7.15□□□□□ -1.26
USP28-215ENST00000545608 ELOVL3Q9HB03 270 aa7.15□□□□□ -1.26
USP28-215ENST00000545608 EMC7Q9NPA0 242 aa7.15□□□□□ -1.26
USP28-215ENST00000545608 ESM1Q9NQ30 184 aa7.15□□□□□ -1.26
USP28-215ENST00000545608 POLE4Q9NR33 117 aa7.15□□□□□ -1.26
USP28-215ENST00000545608 CYSLTR2Q9NS75 346 aa7.15□□□□□ -1.26
USP28-215ENST00000545608 FGFR1OP2Q9NVK5 253 aa7.15□□□□□ -1.26
USP28-215ENST00000545608 GID8Q9NWU2 228 aa7.15□□□□□ -1.26
USP28-215ENST00000545608 CMTM6Q9NX76 183 aa7.15□□□□□ -1.26
USP28-215ENST00000545608 UBAP1Q9NZ09 502 aa7.15□□□□□ -1.26
USP28-215ENST00000545608 A6NIZ1 184 aa7.14□□□□□ -1.27
USP28-215ENST00000545608 ARHGAP32A7KAX9 2087 aa7.14□□□□□ -1.27
USP28-215ENST00000545608 C12orf71A8MTZ7 269 aa7.14□□□□□ -1.27
USP28-215ENST00000545608 F8W735 103 aaPredicted RBP7.14□□□□□ -1.27
USP28-215ENST00000545608 H3BSA7 217 aa7.14□□□□□ -1.27
USP28-215ENST00000545608 CDC42EP2O14613 210 aa7.14□□□□□ -1.27
USP28-215ENST00000545608 TIMM8AO60220 97 aaPredicted RBP7.14□□□□□ -1.27
USP28-215ENST00000545608 DNAJC8O75937 253 aaPredicted RBP7.14□□□□□ -1.27
USP28-215ENST00000545608 PRSS23O95084 383 aa7.14□□□□□ -1.27
USP28-215ENST00000545608 IGHV2-70P01814 119 aa7.14□□□□□ -1.27
USP28-215ENST00000545608 TROVE2P10155 538 aaKnown RBP eCLIP7.14□□□□□ -1.27
USP28-215ENST00000545608 EGR1P18146 543 aa7.14□□□□□ -1.27
USP28-215ENST00000545608 IFNA8P32881 189 aa7.14□□□□□ -1.27
USP28-215ENST00000545608 ARHGDIAP52565 204 aa7.14□□□□□ -1.27
USP28-215ENST00000545608 RAP1BP61224 184 aa7.14□□□□□ -1.27
USP28-215ENST00000545608 RAP1AP62834 184 aa7.14□□□□□ -1.27
USP28-215ENST00000545608 SLC3A1Q07837 685 aa7.14□□□□□ -1.27
USP28-215ENST00000545608 TRAM2Q15035 370 aa7.14□□□□□ -1.27
USP28-215ENST00000545608 ANKDD1AQ495B1 522 aa7.14□□□□□ -1.27
USP28-215ENST00000545608 FAM205BPQ63HN1 556 aa7.14□□□□□ -1.27
USP28-215ENST00000545608 Q6ZR03 302 aa7.14□□□□□ -1.27
USP28-215ENST00000545608 TSEN54Q7Z6J9 526 aaKnown RBP7.14□□□□□ -1.27
USP28-215ENST00000545608 OAFQ86UD1 273 aa7.14□□□□□ -1.27
USP28-215ENST00000545608 SLC15A3Q8IY34 581 aa7.14□□□□□ -1.27
USP28-215ENST00000545608 RNF113BQ8IZP6 322 aaKnown RBP7.14□□□□□ -1.27
USP28-215ENST00000545608 POU5F2Q8N7G0 328 aa7.14□□□□□ -1.27
USP28-215ENST00000545608 C3orf56Q8N813 242 aa7.14□□□□□ -1.27
USP28-215ENST00000545608 DVL3Q92997 716 aaPredicted RBP7.14□□□□□ -1.27
USP28-215ENST00000545608 RCN3Q96D15 328 aa7.14□□□□□ -1.27
USP28-215ENST00000545608 CMBLQ96DG6 245 aa7.14□□□□□ -1.27
USP28-215ENST00000545608 Q96M85 177 aa7.14□□□□□ -1.27
USP28-215ENST00000545608 JMJD8Q96S16 334 aa7.14□□□□□ -1.27
USP28-215ENST00000545608 DIRC2Q96SL1 478 aa7.14□□□□□ -1.27
USP28-215ENST00000545608 FNDC11Q9BVV2 318 aa7.14□□□□□ -1.27
USP28-215ENST00000545608 RBM4Q9BWF3 364 aaKnown RBP7.14□□□□□ -1.27
USP28-215ENST00000545608 SUCNR1Q9BXA5 334 aa7.14□□□□□ -1.27
USP28-215ENST00000545608 NSRP1Q9H0G5 558 aaKnown RBP7.14□□□□□ -1.27
USP28-215ENST00000545608 MMP26Q9NRE1 261 aa7.14□□□□□ -1.27
USP28-215ENST00000545608 TMEM106BQ9NUM4 274 aa7.14□□□□□ -1.27
USP28-215ENST00000545608 TBCCD1Q9NVR7 557 aa7.14□□□□□ -1.27
USP28-215ENST00000545608 CGGBP1Q9UFW8 167 aaPredicted RBP7.14□□□□□ -1.27
USP28-215ENST00000545608 PURGQ9UJV8 347 aaKnown RBP7.14□□□□□ -1.27
USP28-215ENST00000545608 ZDHHC8Q9ULC8 765 aa7.14□□□□□ -1.27
USP28-215ENST00000545608 NDRG4Q9ULP0 352 aaKnown RBP7.14□□□□□ -1.27
USP28-215ENST00000545608 STARD10Q9Y365 291 aa7.14□□□□□ -1.27
USP28-215ENST00000545608 ADAM18Q9Y3Q7 739 aa7.14□□□□□ -1.27
USP28-215ENST00000545608 NPTNQ9Y639 398 aa7.14□□□□□ -1.27
USP28-215ENST00000545608 WNK2Q9Y3S1 2297 aa7.13□□□□□ -1.27
USP28-215ENST00000545608 TRAPPC2LH3BP13 241 aa7.13□□□□□ -1.27
USP28-215ENST00000545608 FAM229AH3BQW9 127 aa7.13□□□□□ -1.27
USP28-215ENST00000545608 CXCR6O00574 342 aa7.13□□□□□ -1.27
USP28-215ENST00000545608 IMPA2O14732 288 aa7.13□□□□□ -1.27
USP28-215ENST00000545608 SPRY1O43609 319 aaPredicted RBP7.13□□□□□ -1.27
USP28-215ENST00000545608 DOK2O60496 412 aa7.13□□□□□ -1.27
USP28-215ENST00000545608 FOXH1O75593 365 aa7.13□□□□□ -1.27
USP28-215ENST00000545608 ABHD16AO95870 558 aa7.13□□□□□ -1.27
USP28-215ENST00000545608 IFNW1P05000 195 aa7.13□□□□□ -1.27
USP28-215ENST00000545608 CD14P08571 375 aa7.13□□□□□ -1.27
USP28-215ENST00000545608 COX5BP10606 129 aa7.13□□□□□ -1.27
USP28-215ENST00000545608 CTLA4P16410 223 aa7.13□□□□□ -1.27
USP28-215ENST00000545608 KITLGP21583 273 aa7.13□□□□□ -1.27
USP28-215ENST00000545608 GATA3P23771 443 aa7.13□□□□□ -1.27
USP28-215ENST00000545608 RPL4P36578 427 aaKnown RBP7.13□□□□□ -1.27
USP28-215ENST00000545608 GPR4P46093 362 aa7.13□□□□□ -1.27
USP28-215ENST00000545608 HTR5AP47898 357 aa7.13□□□□□ -1.27
USP28-215ENST00000545608 LIMS1P48059 325 aa7.13□□□□□ -1.27
USP28-215ENST00000545608 SLC9A3P48764 834 aa7.13□□□□□ -1.27
USP28-215ENST00000545608 ERFP50548 548 aa7.13□□□□□ -1.27
USP28-215ENST00000545608 SEC61A1P61619 476 aaKnown RBP7.13□□□□□ -1.27
USP28-215ENST00000545608 LIPEQ05469 1076 aa7.13□□□□□ -1.27
USP28-215ENST00000545608 SCRN3Q0VDG4 424 aa7.13□□□□□ -1.27
USP28-215ENST00000545608 RIPK1Q13546 671 aa7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms