RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 CAPZA1P52907 286 aa13.46□□□□□ -0.25
USP28-214ENST00000545540 PRSS12P56730 875 aa13.46□□□□□ -0.25
USP28-214ENST00000545540 DEFA5Q01523 94 aa13.46□□□□□ -0.25
USP28-214ENST00000545540 DHRS2Q13268 280 aa13.46□□□□□ -0.25
USP28-214ENST00000545540 CHCHD2P9Q5T1J5 151 aaPredicted RBP13.46□□□□□ -0.25
USP28-214ENST00000545540 RADILQ96JH8 1075 aa13.46□□□□□ -0.25
USP28-214ENST00000545540 CNTD2Q9H8S5 307 aa13.46□□□□□ -0.25
USP28-214ENST00000545540 RALGAPA1Q6GYQ0 2036 aa13.46□□□□□ -0.25
USP28-214ENST00000545540 PLPP3O14495 311 aa13.46□□□□□ -0.26
USP28-214ENST00000545540 CSF2RBP32927 897 aa13.46□□□□□ -0.26
USP28-214ENST00000545540 MRPS10P82664 201 aaKnown RBP13.46□□□□□ -0.26
USP28-214ENST00000545540 GK2Q14410 553 aaPredicted RBP13.46□□□□□ -0.26
USP28-214ENST00000545540 ELOCQ15369 112 aa13.46□□□□□ -0.26
USP28-214ENST00000545540 PTCRAQ6ISU1 281 aaPredicted RBP13.46□□□□□ -0.26
USP28-214ENST00000545540 COX15Q7KZN9 410 aa13.46□□□□□ -0.26
USP28-214ENST00000545540 TSTD1Q8NFU3 115 aa13.46□□□□□ -0.26
USP28-214ENST00000545540 OR5D18Q8NGL1 313 aa13.46□□□□□ -0.26
USP28-214ENST00000545540 GPX8Q8TED1 209 aa13.46□□□□□ -0.26
USP28-214ENST00000545540 MAFIPQ8WZ33 124 aa13.46□□□□□ -0.26
USP28-214ENST00000545540 ROBO4Q8WZ75 1007 aa13.46□□□□□ -0.26
USP28-214ENST00000545540 NICN1Q9BSH3 213 aa13.46□□□□□ -0.26
USP28-214ENST00000545540 SLC7A5P2Q9GIP4 190 aa13.46□□□□□ -0.26
USP28-214ENST00000545540 FRG2CA6NGY1 282 aa13.45□□□□□ -0.26
USP28-214ENST00000545540 AHSA1O95433 338 aa13.45□□□□□ -0.26
USP28-214ENST00000545540 DCNP07585 359 aaKnown RBP13.45□□□□□ -0.26
USP28-214ENST00000545540 PGCP20142 388 aa13.45□□□□□ -0.26
USP28-214ENST00000545540 CD38P28907 300 aa13.45□□□□□ -0.26
USP28-214ENST00000545540 ATP1B3P54709 279 aa13.45□□□□□ -0.26
USP28-214ENST00000545540 GLO1Q04760 184 aa13.45□□□□□ -0.26
USP28-214ENST00000545540 MFAP5Q13361 173 aa13.45□□□□□ -0.26
USP28-214ENST00000545540 GLT8D1Q68CQ7 371 aa13.45□□□□□ -0.26
USP28-214ENST00000545540 ADAD2Q8NCV1 583 aaKnown RBP13.45□□□□□ -0.26
USP28-214ENST00000545540 OR1S1Q8NH92 325 aa13.45□□□□□ -0.26
USP28-214ENST00000545540 ZNF471Q9BX82 626 aaPredicted RBP13.45□□□□□ -0.26
USP28-214ENST00000545540 SELENOIQ9C0D9 397 aa13.45□□□□□ -0.26
USP28-214ENST00000545540 PFDN2Q9UHV9 154 aa13.45□□□□□ -0.26
USP28-214ENST00000545540 MRTO4Q9UKD2 239 aaKnown RBP13.45□□□□□ -0.26
USP28-214ENST00000545540 OR52A1Q9UKL2 312 aa13.45□□□□□ -0.26
USP28-214ENST00000545540 LRP4O75096 1905 aa13.45□□□□□ -0.26
USP28-214ENST00000545540 PMP2P02689 132 aa13.45□□□□□ -0.26
USP28-214ENST00000545540 TMPPEQ6ZT21 453 aa13.45□□□□□ -0.26
USP28-214ENST00000545540 TXNIPQ9H3M7 391 aa13.45□□□□□ -0.26
USP28-214ENST00000545540 BANF2Q9H503 90 aa13.45□□□□□ -0.26
USP28-214ENST00000545540 COPS7AQ9UBW8 275 aa13.45□□□□□ -0.26
USP28-214ENST00000545540 VSIG4Q9Y279 399 aa13.45□□□□□ -0.26
USP28-214ENST00000545540 TLCD2A6NGC4 264 aa13.45□□□□□ -0.26
USP28-214ENST00000545540 OR5H14A6NHG9 310 aa13.45□□□□□ -0.26
USP28-214ENST00000545540 ABOP16442 354 aa13.45□□□□□ -0.26
USP28-214ENST00000545540 BAMBIQ13145 260 aa13.45□□□□□ -0.26
USP28-214ENST00000545540 SGCBQ16585 318 aa13.45□□□□□ -0.26
USP28-214ENST00000545540 KCTD18Q6PI47 426 aaPredicted RBP13.45□□□□□ -0.26
USP28-214ENST00000545540 SLC29A4Q7RTT9 530 aa13.45□□□□□ -0.26
USP28-214ENST00000545540 FJX1Q86VR8 437 aa13.45□□□□□ -0.26
USP28-214ENST00000545540 EID2Q8N6I1 236 aa13.45□□□□□ -0.26
USP28-214ENST00000545540 OR13C8Q8NGS7 320 aa13.45□□□□□ -0.26
USP28-214ENST00000545540 OR52N5Q8NH56 324 aa13.45□□□□□ -0.26
USP28-214ENST00000545540 ZNF519Q8TB69 540 aa13.45□□□□□ -0.26
USP28-214ENST00000545540 ADAT3Q96EY9 351 aaPredicted RBP13.45□□□□□ -0.26
USP28-214ENST00000545540 CST11Q9H112 138 aa13.45□□□□□ -0.26
USP28-214ENST00000545540 ZNF304Q9HCX3 659 aa13.45□□□□□ -0.26
USP28-214ENST00000545540 PRMT8Q9NR22 394 aaPredicted RBP13.45□□□□□ -0.26
USP28-214ENST00000545540 LHX6Q9UPM6 363 aa13.45□□□□□ -0.26
USP28-214ENST00000545540 A0A1W2PNR3 127 aa13.44□□□□□ -0.26
USP28-214ENST00000545540 ATP6V1G2-DDX39BF2Z307 99 aa13.44□□□□□ -0.26
USP28-214ENST00000545540 GDF9O60383 454 aa13.44□□□□□ -0.26
USP28-214ENST00000545540 LDOC1O95751 146 aaPredicted RBP13.44□□□□□ -0.26
USP28-214ENST00000545540 FBLP22087 321 aaKnown RBP13.44□□□□□ -0.26
USP28-214ENST00000545540 TRAPPC6BQ86SZ2 158 aa13.44□□□□□ -0.26
USP28-214ENST00000545540 SLC38A9Q8NBW4 561 aa13.44□□□□□ -0.26
USP28-214ENST00000545540 ADAT1Q9BUB4 502 aaKnown RBP13.44□□□□□ -0.26
USP28-214ENST00000545540 TEX51A0A1B0GUA7 166 aa13.44□□□□□ -0.26
USP28-214ENST00000545540 NPIPA5E9PKD4 350 aa13.44□□□□□ -0.26
USP28-214ENST00000545540 PPP1R1AQ13522 171 aa13.44□□□□□ -0.26
USP28-214ENST00000545540 CATSPERDQ86XM0 798 aa13.44□□□□□ -0.26
USP28-214ENST00000545540 OR10K1Q8NGX5 313 aa13.44□□□□□ -0.26
USP28-214ENST00000545540 SCARB1Q8WTV0 552 aa13.44□□□□□ -0.26
USP28-214ENST00000545540 LIPHQ8WWY8 451 aa13.44□□□□□ -0.26
USP28-214ENST00000545540 LMAN1LQ9HAT1 526 aa13.44□□□□□ -0.26
USP28-214ENST00000545540 NPIPA1Q9UND3 350 aa13.44□□□□□ -0.26
USP28-214ENST00000545540 MS4A18H0YCH9 400 aa13.44□□□□□ -0.26
USP28-214ENST00000545540 TSPAN2O60636 221 aa13.44□□□□□ -0.26
USP28-214ENST00000545540 H2BFMP0C1H6 154 aa13.44□□□□□ -0.26
USP28-214ENST00000545540 HRH1P35367 487 aa13.44□□□□□ -0.26
USP28-214ENST00000545540 MS4A18Q3C1V0 323 aa13.44□□□□□ -0.26
USP28-214ENST00000545540 PPP1R1CQ8WVI7 109 aa13.44□□□□□ -0.26
USP28-214ENST00000545540 HHLA2Q9UM44 414 aa13.44□□□□□ -0.26
USP28-214ENST00000545540 A8MVM7 634 aa13.43□□□□□ -0.26
USP28-214ENST00000545540 M6PRP20645 277 aa13.43□□□□□ -0.26
USP28-214ENST00000545540 CD34P28906 385 aa13.43□□□□□ -0.26
USP28-214ENST00000545540 FASLGP48023 281 aa13.43□□□□□ -0.26
USP28-214ENST00000545540 BIDP55957 195 aa13.43□□□□□ -0.26
USP28-214ENST00000545540 GMFBP60983 142 aa13.43□□□□□ -0.26
USP28-214ENST00000545540 TLE3Q04726 772 aa13.43□□□□□ -0.26
USP28-214ENST00000545540 EMC4Q5J8M3 183 aa13.43□□□□□ -0.26
USP28-214ENST00000545540 PDZD9Q8IXQ8 264 aa13.43□□□□□ -0.26
USP28-214ENST00000545540 ZNF248Q8NDW4 579 aa13.43□□□□□ -0.26
USP28-214ENST00000545540 BHLHE23Q8NDY6 225 aa13.43□□□□□ -0.26
USP28-214ENST00000545540 FBXW5Q969U6 566 aa13.43□□□□□ -0.26
USP28-214ENST00000545540 EMC3Q9P0I2 261 aa13.43□□□□□ -0.26
USP28-214ENST00000545540 IGHV1OR15-9A0A0B4J2B8 117 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 107.9 ms