RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 TUBA1BP68363 451 aa15.21■□□□□ 0.03
CLSTN3-210ENST00000540931 TUBA4AP68366 448 aa15.21■□□□□ 0.03
CLSTN3-210ENST00000540931 IL5RAQ01344 420 aa15.21■□□□□ 0.03
CLSTN3-210ENST00000540931 RAB39AQ14964 217 aa15.21■□□□□ 0.03
CLSTN3-210ENST00000540931 SNCBQ16143 134 aa15.21■□□□□ 0.03
CLSTN3-210ENST00000540931 KLHL22Q53GT1 634 aa15.21■□□□□ 0.03
CLSTN3-210ENST00000540931 DEGS2Q6QHC5 323 aa15.21■□□□□ 0.03
CLSTN3-210ENST00000540931 TUBA1AQ71U36 451 aa15.21■□□□□ 0.03
CLSTN3-210ENST00000540931 TMEM200AQ86VY9 491 aa15.21■□□□□ 0.03
CLSTN3-210ENST00000540931 TIGD4Q8IY51 512 aa15.21■□□□□ 0.03
CLSTN3-210ENST00000540931 ENTHD1Q8IYW4 607 aa15.21■□□□□ 0.03
CLSTN3-210ENST00000540931 PIAS4Q8N2W9 510 aaPredicted RBP15.21■□□□□ 0.03
CLSTN3-210ENST00000540931 ZNF511Q8NB15 262 aa15.21■□□□□ 0.03
CLSTN3-210ENST00000540931 OR51L1Q8NGJ5 315 aa15.21■□□□□ 0.03
CLSTN3-210ENST00000540931 OR6N2Q8NGY6 317 aa15.21■□□□□ 0.03
CLSTN3-210ENST00000540931 OR1F12Q8NHA8 337 aa15.21■□□□□ 0.03
CLSTN3-210ENST00000540931 OTOSQ8NHW6 89 aa15.21■□□□□ 0.03
CLSTN3-210ENST00000540931 NRG4Q8WWG1 115 aa15.21■□□□□ 0.03
CLSTN3-210ENST00000540931 ZMYND19Q96E35 227 aaPredicted RBP15.21■□□□□ 0.03
CLSTN3-210ENST00000540931 ZNF582Q96NG8 517 aaPredicted RBP15.21■□□□□ 0.03
CLSTN3-210ENST00000540931 ATF6BQ99941 703 aa15.21■□□□□ 0.03
CLSTN3-210ENST00000540931 HCAR1Q9BXC0 346 aa15.21■□□□□ 0.03
CLSTN3-210ENST00000540931 C1QTNF6Q9BXI9 259 aa15.21■□□□□ 0.03
CLSTN3-210ENST00000540931 LAMP5Q9UJQ1 280 aa15.21■□□□□ 0.03
CLSTN3-210ENST00000540931 GDF2Q9UK05 429 aaPredicted RBP15.21■□□□□ 0.03
CLSTN3-210ENST00000540931 RAB26Q9ULW5 256 aa15.21■□□□□ 0.03
CLSTN3-210ENST00000540931 PKDREJQ9NTG1 2253 aa15.2■□□□□ 0.02
CLSTN3-210ENST00000540931 ZNF878C9JN71 531 aa15.2■□□□□ 0.02
CLSTN3-210ENST00000540931 ICMTO60725 284 aa15.2■□□□□ 0.02
CLSTN3-210ENST00000540931 MPZL1O95297 269 aa15.2■□□□□ 0.02
CLSTN3-210ENST00000540931 LYNP07948 512 aa15.2■□□□□ 0.02
CLSTN3-210ENST00000540931 OR2T7P0C7T2 308 aa15.2■□□□□ 0.02
CLSTN3-210ENST00000540931 BMP4P12644 408 aa15.2■□□□□ 0.02
CLSTN3-210ENST00000540931 HTR5AP47898 357 aa15.2■□□□□ 0.02
CLSTN3-210ENST00000540931 ZNF544Q6NX49 715 aa15.2■□□□□ 0.02
CLSTN3-210ENST00000540931 UGT2A3Q6UWM9 527 aa15.2■□□□□ 0.02
CLSTN3-210ENST00000540931 ZNF704Q6ZNC4 412 aaPredicted RBP15.2■□□□□ 0.02
CLSTN3-210ENST00000540931 C20orf204Q6ZNR8 217 aa15.2■□□□□ 0.02
CLSTN3-210ENST00000540931 VASH1Q7L8A9 365 aaPredicted RBP15.2■□□□□ 0.02
CLSTN3-210ENST00000540931 OR5L1Q8NGL2 311 aa15.2■□□□□ 0.02
CLSTN3-210ENST00000540931 OR2T27Q8NH04 317 aa15.2■□□□□ 0.02
CLSTN3-210ENST00000540931 ITFG2Q969R8 447 aa15.2■□□□□ 0.02
CLSTN3-210ENST00000540931 WNT5BQ9H1J7 359 aa15.2■□□□□ 0.02
CLSTN3-210ENST00000540931 IGHV2OR16-5A0A0B4J2B6 119 aa15.19■□□□□ 0.02
CLSTN3-210ENST00000540931 ZNF503-AS2A6NEH8 195 aa15.19■□□□□ 0.02
CLSTN3-210ENST00000540931 TVP23AA6NH52 213 aa15.19■□□□□ 0.02
CLSTN3-210ENST00000540931 H3BSA7 217 aa15.19■□□□□ 0.02
CLSTN3-210ENST00000540931 SYNGR3O43761 229 aa15.19■□□□□ 0.02
CLSTN3-210ENST00000540931 ZNF254O75437 659 aa15.19■□□□□ 0.02
CLSTN3-210ENST00000540931 FADS2O95864 444 aaKnown RBP15.19■□□□□ 0.02
CLSTN3-210ENST00000540931 SCG5P05408 212 aa15.19■□□□□ 0.02
CLSTN3-210ENST00000540931 ZNF35P13682 527 aa15.19■□□□□ 0.02
CLSTN3-210ENST00000540931 TPTEP56180 551 aa15.19■□□□□ 0.02
CLSTN3-210ENST00000540931 SELENOVP59797 346 aa15.19■□□□□ 0.02
CLSTN3-210ENST00000540931 RAB40BQ12829 278 aa15.19■□□□□ 0.02
CLSTN3-210ENST00000540931 MED21Q13503 144 aa15.19■□□□□ 0.02
CLSTN3-210ENST00000540931 TAF13Q15543 124 aa15.19■□□□□ 0.02
CLSTN3-210ENST00000540931 MOGQ16653 247 aa15.19■□□□□ 0.02
CLSTN3-210ENST00000540931 MEP1BQ16820 701 aa15.19■□□□□ 0.02
CLSTN3-210ENST00000540931 IZUMO2Q6UXV1 221 aa15.19■□□□□ 0.02
CLSTN3-210ENST00000540931 DPY19L4Q7Z388 723 aa15.19■□□□□ 0.02
CLSTN3-210ENST00000540931 DCXRQ7Z4W1 244 aa15.19■□□□□ 0.02
CLSTN3-210ENST00000540931 THAP5Q7Z6K1 395 aa15.19■□□□□ 0.02
CLSTN3-210ENST00000540931 HIST2H2ABQ8IUE6 130 aaPredicted RBP15.19■□□□□ 0.02
CLSTN3-210ENST00000540931 ZNF295-AS1Q8N0V1 137 aa15.19■□□□□ 0.02
CLSTN3-210ENST00000540931 BBS1Q8NFJ9 593 aa15.19■□□□□ 0.02
CLSTN3-210ENST00000540931 FBXW5Q969U6 566 aa15.19■□□□□ 0.02
CLSTN3-210ENST00000540931 POM121L2Q96KW2 1035 aa15.19■□□□□ 0.02
CLSTN3-210ENST00000540931 FOXN4Q96NZ1 517 aa15.19■□□□□ 0.02
CLSTN3-210ENST00000540931 ZNF442Q9H7R0 627 aa15.19■□□□□ 0.02
CLSTN3-210ENST00000540931 DDX28Q9NUL7 540 aaKnown RBP15.19■□□□□ 0.02
CLSTN3-210ENST00000540931 TBCCD1Q9NVR7 557 aa15.19■□□□□ 0.02
CLSTN3-210ENST00000540931 SETD2Q9BYW2 2564 aaPredicted RBP15.18■□□□□ 0.02
CLSTN3-210ENST00000540931 C5orf49A4QMS7 147 aa15.18■□□□□ 0.02
CLSTN3-210ENST00000540931 ZNF670-ZNF695F2Z2N8 137 aa15.18■□□□□ 0.02
CLSTN3-210ENST00000540931 RER1O15258 196 aa15.18■□□□□ 0.02
CLSTN3-210ENST00000540931 SBK2P0C263 348 aa15.18■□□□□ 0.02
CLSTN3-210ENST00000540931 PATE4P0C8F1 98 aa15.18■□□□□ 0.02
CLSTN3-210ENST00000540931 GABRB1P18505 474 aa15.18■□□□□ 0.02
CLSTN3-210ENST00000540931 NR4A1P22736 598 aa15.18■□□□□ 0.02
CLSTN3-210ENST00000540931 APEX1P27695 318 aaKnown RBP15.18■□□□□ 0.02
CLSTN3-210ENST00000540931 DCTDP32321 178 aa15.18■□□□□ 0.02
CLSTN3-210ENST00000540931 AQP4P55087 323 aa15.18■□□□□ 0.02
CLSTN3-210ENST00000540931 EIF2B1Q14232 305 aaKnown RBP15.18■□□□□ 0.02
CLSTN3-210ENST00000540931 MAD2L1BPQ15013 274 aaPredicted RBP15.18■□□□□ 0.02
CLSTN3-210ENST00000540931 ZNF672Q499Z4 452 aaPredicted RBP15.18■□□□□ 0.02
CLSTN3-210ENST00000540931 CCDC92Q53HC0 331 aaPredicted RBP15.18■□□□□ 0.02
CLSTN3-210ENST00000540931 ZNF774Q6NX45 483 aa15.18■□□□□ 0.02
CLSTN3-210ENST00000540931 USP51Q70EK9 711 aa15.18■□□□□ 0.02
CLSTN3-210ENST00000540931 ZSCAN2Q7Z7L9 614 aaPredicted RBP15.18■□□□□ 0.02
CLSTN3-210ENST00000540931 CPEB3Q8NE35 698 aaKnown RBP15.18■□□□□ 0.02
CLSTN3-210ENST00000540931 AKR7LQ8NHP1 331 aa15.18■□□□□ 0.02
CLSTN3-210ENST00000540931 FGFBP3Q8TAT2 258 aa15.18■□□□□ 0.02
CLSTN3-210ENST00000540931 HAVCR2Q8TDQ0 301 aa15.18■□□□□ 0.02
CLSTN3-210ENST00000540931 RNF133Q8WVZ7 376 aa15.18■□□□□ 0.02
CLSTN3-210ENST00000540931 MROQ9BYG7 248 aa15.18■□□□□ 0.02
CLSTN3-210ENST00000540931 INPP5EQ9NRR6 644 aa15.18■□□□□ 0.02
CLSTN3-210ENST00000540931 GPR160Q9UJ42 338 aa15.18■□□□□ 0.02
CLSTN3-210ENST00000540931 CCDC182A6NF36 153 aa15.17■□□□□ 0.02
CLSTN3-210ENST00000540931 HS3ST1O14792 307 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms