RNA–Protein interactions for RNA: ENST00000540230.5

UBE3B-212, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 1 (best) BASIC

Gene UBE3B, Length 1,541 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-212ENST00000540230 SONP18583 2426 aaKnown RBP12.88□□□□□ -0.35
UBE3B-212ENST00000540230 IGHV4-61A0A0C4DH41 118 aa12.88□□□□□ -0.35
UBE3B-212ENST00000540230 LOC390937A0A1W2PQ73 354 aa12.88□□□□□ -0.35
UBE3B-212ENST00000540230 OR6C6A6NF89 314 aa12.88□□□□□ -0.35
UBE3B-212ENST00000540230 PSKH1P11801 424 aa12.88□□□□□ -0.35
UBE3B-212ENST00000540230 NR4A2P43354 598 aa12.88□□□□□ -0.35
UBE3B-212ENST00000540230 PPP1CBP62140 327 aa12.88□□□□□ -0.35
UBE3B-212ENST00000540230 HIST1H3AP68431 136 aa12.88□□□□□ -0.35
UBE3B-212ENST00000540230 LOXL1Q08397 574 aaPredicted RBP12.88□□□□□ -0.35
UBE3B-212ENST00000540230 CRMP1Q14194 572 aa12.88□□□□□ -0.35
UBE3B-212ENST00000540230 TMEM249Q2WGJ8 235 aa12.88□□□□□ -0.35
UBE3B-212ENST00000540230 HIST2H3PS2Q5TEC6 136 aa12.88□□□□□ -0.35
UBE3B-212ENST00000540230 CFAP77Q6ZQR2 320 aa12.88□□□□□ -0.35
UBE3B-212ENST00000540230 HIST2H3AQ71DI3 136 aa12.88□□□□□ -0.35
UBE3B-212ENST00000540230 LNX2Q8N448 690 aa12.88□□□□□ -0.35
UBE3B-212ENST00000540230 IQCF1Q8N6M8 205 aa12.88□□□□□ -0.35
UBE3B-212ENST00000540230 OR51L1Q8NGJ5 315 aa12.88□□□□□ -0.35
UBE3B-212ENST00000540230 OR9Q1Q8NGQ5 310 aa12.88□□□□□ -0.35
UBE3B-212ENST00000540230 KLF14Q8TD94 323 aaPredicted RBP12.88□□□□□ -0.35
UBE3B-212ENST00000540230 PIMREGQ9BSJ6 248 aa12.88□□□□□ -0.35
UBE3B-212ENST00000540230 MS4A5Q9H3V2 200 aa12.88□□□□□ -0.35
UBE3B-212ENST00000540230 PDP1Q9P0J1 537 aaPredicted RBP12.88□□□□□ -0.35
UBE3B-212ENST00000540230 EIF3KQ9UBQ5 218 aaKnown RBP12.88□□□□□ -0.35
UBE3B-212ENST00000540230 ARRDC5A6NEK1 342 aa12.87□□□□□ -0.35
UBE3B-212ENST00000540230 GNGT2O14610 69 aa12.87□□□□□ -0.35
UBE3B-212ENST00000540230 ABHD16AO95870 558 aa12.87□□□□□ -0.35
UBE3B-212ENST00000540230 IGHV3-13P01766 116 aa12.87□□□□□ -0.35
UBE3B-212ENST00000540230 GYPBP06028 91 aa12.87□□□□□ -0.35
UBE3B-212ENST00000540230 CLUP10909 449 aa12.87□□□□□ -0.35
UBE3B-212ENST00000540230 GSTM3P21266 225 aa12.87□□□□□ -0.35
UBE3B-212ENST00000540230 PRKACGP22612 351 aa12.87□□□□□ -0.35
UBE3B-212ENST00000540230 RPS27P42677 84 aaKnown RBP12.87□□□□□ -0.35
UBE3B-212ENST00000540230 TEKQ02763 1124 aa12.87□□□□□ -0.35
UBE3B-212ENST00000540230 GGTLC2Q14390 218 aa12.87□□□□□ -0.35
UBE3B-212ENST00000540230 SLC36A3Q495N2 470 aa12.87□□□□□ -0.35
UBE3B-212ENST00000540230 CD300LDQ6UXZ3 194 aa12.87□□□□□ -0.35
UBE3B-212ENST00000540230 ZNF786Q8N393 782 aa12.87□□□□□ -0.35
UBE3B-212ENST00000540230 OR1F12Q8NHA8 337 aa12.87□□□□□ -0.35
UBE3B-212ENST00000540230 UBASH3BQ8TF42 649 aa12.87□□□□□ -0.35
UBE3B-212ENST00000540230 RBM4Q9BWF3 364 aaKnown RBP12.87□□□□□ -0.35
UBE3B-212ENST00000540230 NTN4Q9HB63 628 aa12.87□□□□□ -0.35
UBE3B-212ENST00000540230 MYOZ1Q9NP98 299 aaPredicted RBP12.87□□□□□ -0.35
UBE3B-212ENST00000540230 GRIP1Q9Y3R0 1128 aa12.87□□□□□ -0.35
UBE3B-212ENST00000540230 TVP23AA6NH52 213 aa12.86□□□□□ -0.35
UBE3B-212ENST00000540230 C17orf100A8MU93 164 aa12.86□□□□□ -0.35
UBE3B-212ENST00000540230 NDUFS8O00217 210 aa12.86□□□□□ -0.35
UBE3B-212ENST00000540230 TIPRLO75663 272 aa12.86□□□□□ -0.35
UBE3B-212ENST00000540230 ERCC1P07992 297 aaPredicted RBP12.86□□□□□ -0.35
UBE3B-212ENST00000540230 USF1P22415 310 aaPredicted RBP12.86□□□□□ -0.35
UBE3B-212ENST00000540230 COL8A2P25067 703 aa12.86□□□□□ -0.35
UBE3B-212ENST00000540230 GGT2P36268 569 aa12.86□□□□□ -0.35
UBE3B-212ENST00000540230 MMP15P51511 669 aa12.86□□□□□ -0.35
UBE3B-212ENST00000540230 COX10Q12887 443 aa12.86□□□□□ -0.35
UBE3B-212ENST00000540230 GK3PQ14409 553 aa12.86□□□□□ -0.35
UBE3B-212ENST00000540230 RSPO1Q2MKA7 263 aaPredicted RBP12.86□□□□□ -0.35
UBE3B-212ENST00000540230 ZNF718Q3SXZ3 478 aa12.86□□□□□ -0.35
UBE3B-212ENST00000540230 MBNL2Q5VZF2 373 aaKnown RBP12.86□□□□□ -0.35
UBE3B-212ENST00000540230 SLC18B1Q6NT16 456 aa12.86□□□□□ -0.35
UBE3B-212ENST00000540230 OR2T33Q8NG76 320 aa12.86□□□□□ -0.35
UBE3B-212ENST00000540230 YIPF5Q969M3 257 aa12.86□□□□□ -0.35
UBE3B-212ENST00000540230 HINT3Q9NQE9 182 aaKnown RBP12.86□□□□□ -0.35
UBE3B-212ENST00000540230 STARD10Q9Y365 291 aa12.86□□□□□ -0.35
UBE3B-212ENST00000540230 ABCA2Q9BZC7 2435 aa12.86□□□□□ -0.35
UBE3B-212ENST00000540230 CD5LO43866 347 aa12.85□□□□□ -0.35
UBE3B-212ENST00000540230 E2F6O75461 281 aa12.85□□□□□ -0.35
UBE3B-212ENST00000540230 HLA-DQA2P01906 255 aa12.85□□□□□ -0.35
UBE3B-212ENST00000540230 GIFP27352 417 aa12.85□□□□□ -0.35
UBE3B-212ENST00000540230 GCH1P30793 250 aa12.85□□□□□ -0.35
UBE3B-212ENST00000540230 SELENOVP59797 346 aa12.85□□□□□ -0.35
UBE3B-212ENST00000540230 CCL8P80075 99 aa12.85□□□□□ -0.35
UBE3B-212ENST00000540230 RIN1Q13671 783 aa12.85□□□□□ -0.35
UBE3B-212ENST00000540230 TRIP10Q15642 601 aa12.85□□□□□ -0.35
UBE3B-212ENST00000540230 PROKR2Q8NFJ6 384 aa12.85□□□□□ -0.35
UBE3B-212ENST00000540230 GJC3Q8NFK1 279 aa12.85□□□□□ -0.35
UBE3B-212ENST00000540230 HCAR1Q9BXC0 346 aa12.85□□□□□ -0.35
UBE3B-212ENST00000540230 NMNAT2Q9BZQ4 307 aa12.85□□□□□ -0.35
UBE3B-212ENST00000540230 ELOVL3Q9HB03 270 aa12.85□□□□□ -0.35
UBE3B-212ENST00000540230 PNRC2Q9NPJ4 139 aaKnown RBP12.85□□□□□ -0.35
UBE3B-212ENST00000540230 TBCCD1Q9NVR7 557 aa12.85□□□□□ -0.35
UBE3B-212ENST00000540230 SLCO1C1Q9NYB5 712 aa12.85□□□□□ -0.35
UBE3B-212ENST00000540230 DNAJB9Q9UBS3 223 aa12.85□□□□□ -0.35
UBE3B-212ENST00000540230 CYB5R1Q9UHQ9 305 aa12.85□□□□□ -0.35
UBE3B-212ENST00000540230 LRP5LA4QPB2 252 aa12.84□□□□□ -0.35
UBE3B-212ENST00000540230 ZSCAN5BA6NJL1 495 aa12.84□□□□□ -0.35
UBE3B-212ENST00000540230 H3BN98 237 aa12.84□□□□□ -0.35
UBE3B-212ENST00000540230 ATP5HO75947 161 aa12.84□□□□□ -0.35
UBE3B-212ENST00000540230 IGHV4-31P0DP07 118 aa12.84□□□□□ -0.35
UBE3B-212ENST00000540230 RASSF2P50749 326 aa12.84□□□□□ -0.35
UBE3B-212ENST00000540230 PSG7Q13046 419 aa12.84□□□□□ -0.35
UBE3B-212ENST00000540230 HNRNPA0Q13151 305 aaKnown RBP12.84□□□□□ -0.35
UBE3B-212ENST00000540230 CCNIQ14094 377 aa12.84□□□□□ -0.35
UBE3B-212ENST00000540230 ACSM5Q6NUN0 579 aa12.84□□□□□ -0.35
UBE3B-212ENST00000540230 TMEM154Q6P9G4 183 aa12.84□□□□□ -0.35
UBE3B-212ENST00000540230 OR10S1Q8NGN2 331 aa12.84□□□□□ -0.35
UBE3B-212ENST00000540230 TEX47Q8TBZ9 253 aa12.84□□□□□ -0.35
UBE3B-212ENST00000540230 SNX33Q8WV41 574 aa12.84□□□□□ -0.35
UBE3B-212ENST00000540230 MAP6Q96JE9 813 aa12.84□□□□□ -0.35
UBE3B-212ENST00000540230 COQ7Q99807 217 aa12.84□□□□□ -0.35
UBE3B-212ENST00000540230 SOX7Q9BT81 388 aa12.84□□□□□ -0.35
UBE3B-212ENST00000540230 HDHD2Q9H0R4 259 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms