RNA–Protein interactions for RNA: ENST00000531873.5

CD44-234, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 584 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-234ENST00000531873 OR5AR1Q8NGP9 310 aa1.98□□□□□ -2.09
CD44-234ENST00000531873 BLOC1S5Q8TDH9 187 aa1.98□□□□□ -2.09
CD44-234ENST00000531873 RAB1CQ92928 201 aa1.98□□□□□ -2.09
CD44-234ENST00000531873 APH1AQ96BI3 265 aa1.98□□□□□ -2.09
CD44-234ENST00000531873 C9orf72Q96LT7 481 aa1.98□□□□□ -2.09
CD44-234ENST00000531873 CSPG4P5Q96PW8 444 aa1.98□□□□□ -2.09
CD44-234ENST00000531873 MICU1Q9BPX6 476 aa1.98□□□□□ -2.09
CD44-234ENST00000531873 CLSTN2Q9H4D0 955 aa1.98□□□□□ -2.09
CD44-234ENST00000531873 NANOGQ9H9S0 305 aa1.98□□□□□ -2.09
CD44-234ENST00000531873 ZMAT5Q9UDW3 170 aaKnown RBP1.98□□□□□ -2.09
CD44-234ENST00000531873 NEU3Q9UQ49 428 aa1.98□□□□□ -2.09
CD44-234ENST00000531873 MYO10Q9HD67 2058 aa1.98□□□□□ -2.09
CD44-234ENST00000531873 NISCHQ9Y2I1 1504 aa1.97□□□□□ -2.09
CD44-234ENST00000531873 GAKO14976 1311 aa1.97□□□□□ -2.09
CD44-234ENST00000531873 MAP3K15Q6ZN16 1313 aa1.97□□□□□ -2.09
CD44-234ENST00000531873 ADGRA3Q8IWK6 1321 aa1.97□□□□□ -2.09
CD44-234ENST00000531873 A0A0J9YYE9 177 aa1.97□□□□□ -2.09
CD44-234ENST00000531873 LOC100653049A0A140TA62 436 aa1.97□□□□□ -2.09
CD44-234ENST00000531873 A6NDN8 102 aa1.97□□□□□ -2.09
CD44-234ENST00000531873 A6NDX4 124 aa1.97□□□□□ -2.09
CD44-234ENST00000531873 SLC22A20A6NK97 555 aa1.97□□□□□ -2.09
CD44-234ENST00000531873 FAM25EA8MYX2 175 aa1.97□□□□□ -2.09
CD44-234ENST00000531873 KLLNB2CW77 178 aa1.97□□□□□ -2.09
CD44-234ENST00000531873 ERI3O43414 337 aaKnown RBP1.97□□□□□ -2.09
CD44-234ENST00000531873 KRT34O76011 436 aa1.97□□□□□ -2.09
CD44-234ENST00000531873 FARS2O95363 451 aaKnown RBP1.97□□□□□ -2.09
CD44-234ENST00000531873 TDP2O95551 362 aa1.97□□□□□ -2.09
CD44-234ENST00000531873 TRBC1P01850 177 aa1.97□□□□□ -2.09
CD44-234ENST00000531873 MBP02144 154 aa1.97□□□□□ -2.09
CD44-234ENST00000531873 DCNP07585 359 aaKnown RBP1.97□□□□□ -2.09
CD44-234ENST00000531873 GABRG2P18507 467 aa1.97□□□□□ -2.09
CD44-234ENST00000531873 PMCHP20382 165 aa1.97□□□□□ -2.09
CD44-234ENST00000531873 F2RP25116 425 aa1.97□□□□□ -2.09
CD44-234ENST00000531873 RPS10P46783 165 aaKnown RBP1.97□□□□□ -2.09
CD44-234ENST00000531873 FABP6P51161 128 aa1.97□□□□□ -2.09
CD44-234ENST00000531873 KRTAP10-3P60369 221 aa1.97□□□□□ -2.09
CD44-234ENST00000531873 HMGCS1Q01581 520 aa1.97□□□□□ -2.09
CD44-234ENST00000531873 ZNF33AQ06730 810 aa1.97□□□□□ -2.09
CD44-234ENST00000531873 SLC39A6Q13433 755 aa1.97□□□□□ -2.09
CD44-234ENST00000531873 WDR43Q15061 677 aaKnown RBP eCLIP1.97□□□□□ -2.09
CD44-234ENST00000531873 PON2Q15165 354 aa1.97□□□□□ -2.09
CD44-234ENST00000531873 RGNQ15493 299 aa1.97□□□□□ -2.09
CD44-234ENST00000531873 TSC22D1Q15714 1073 aa1.97□□□□□ -2.09
CD44-234ENST00000531873 HNRNPA1L2Q32P51 320 aaKnown RBP1.97□□□□□ -2.09
CD44-234ENST00000531873 TPTE2P1Q5T6R2 138 aa1.97□□□□□ -2.09
CD44-234ENST00000531873 MLIPQ5VWP3 458 aa1.97□□□□□ -2.09
CD44-234ENST00000531873 DNAJC24Q6P3W2 148 aa1.97□□□□□ -2.09
CD44-234ENST00000531873 ULK3Q6PHR2 472 aa1.97□□□□□ -2.09
CD44-234ENST00000531873 NPSR1Q6W5P4 371 aa1.97□□□□□ -2.09
CD44-234ENST00000531873 C12orf54Q6X4T0 127 aa1.97□□□□□ -2.09
CD44-234ENST00000531873 NCCRP1Q6ZVX7 275 aaPredicted RBP1.97□□□□□ -2.09
CD44-234ENST00000531873 ZNF429Q86V71 674 aa1.97□□□□□ -2.09
CD44-234ENST00000531873 NPWQ8N729 165 aa1.97□□□□□ -2.09
CD44-234ENST00000531873 ZNF433Q8N7K0 673 aaPredicted RBP1.97□□□□□ -2.09
CD44-234ENST00000531873 Q8N9W7 124 aa1.97□□□□□ -2.09
CD44-234ENST00000531873 OR51E1Q8TCB6 317 aa1.97□□□□□ -2.09
CD44-234ENST00000531873 APH1BQ8WW43 257 aa1.97□□□□□ -2.09
CD44-234ENST00000531873 PIH1D2Q8WWB5 315 aa1.97□□□□□ -2.09
CD44-234ENST00000531873 TMEM230Q96A57 120 aa1.97□□□□□ -2.09
CD44-234ENST00000531873 CREB3L1Q96BA8 519 aa1.97□□□□□ -2.09
CD44-234ENST00000531873 ELSPBP1Q96BH3 223 aa1.97□□□□□ -2.09
CD44-234ENST00000531873 SEH1LQ96EE3 360 aa1.97□□□□□ -2.09
CD44-234ENST00000531873 GALNT14Q96FL9 552 aa1.97□□□□□ -2.09
CD44-234ENST00000531873 ZIM3Q96PE6 472 aa1.97□□□□□ -2.09
CD44-234ENST00000531873 ZNF317Q96PQ6 595 aaPredicted RBP1.97□□□□□ -2.09
CD44-234ENST00000531873 TAAR1Q96RJ0 339 aa1.97□□□□□ -2.09
CD44-234ENST00000531873 FOXC2Q99958 501 aa1.97□□□□□ -2.09
CD44-234ENST00000531873 HDHD3Q9BSH5 251 aaPredicted RBP1.97□□□□□ -2.09
CD44-234ENST00000531873 CHAC1Q9BUX1 264 aa1.97□□□□□ -2.09
CD44-234ENST00000531873 NAA50Q9GZZ1 169 aaKnown RBP1.97□□□□□ -2.09
CD44-234ENST00000531873 DEFB129Q9H1M3 183 aa1.97□□□□□ -2.09
CD44-234ENST00000531873 CD209Q9NNX6 404 aa1.97□□□□□ -2.09
CD44-234ENST00000531873 ZNF331Q9NQX6 463 aaPredicted RBP1.97□□□□□ -2.09
CD44-234ENST00000531873 ABCB10Q9NRK6 738 aa1.97□□□□□ -2.09
CD44-234ENST00000531873 NUFIP1Q9UHK0 495 aaKnown RBP1.97□□□□□ -2.09
CD44-234ENST00000531873 CD84Q9UIB8 345 aa1.97□□□□□ -2.09
CD44-234ENST00000531873 CABIN1Q9Y6J0 2220 aa1.97□□□□□ -2.09
CD44-234ENST00000531873 WI2-2373I1.2A0A1W2PRP0 233 aa1.96□□□□□ -2.1
CD44-234ENST00000531873 FAM166BA8MTA8 275 aa1.96□□□□□ -2.1
CD44-234ENST00000531873 H7C417 338 aa1.96□□□□□ -2.1
CD44-234ENST00000531873 LAD1O00515 517 aa1.96□□□□□ -2.1
CD44-234ENST00000531873 NME4O00746 187 aa1.96□□□□□ -2.1
CD44-234ENST00000531873 RAB3DO95716 219 aa1.96□□□□□ -2.1
CD44-234ENST00000531873 PCCAP05165 728 aaPredicted RBP1.96□□□□□ -2.1
CD44-234ENST00000531873 FABP3P05413 133 aa1.96□□□□□ -2.1
CD44-234ENST00000531873 EIF4EP06730 217 aaKnown RBP1.96□□□□□ -2.1
CD44-234ENST00000531873 KLK1P06870 262 aa1.96□□□□□ -2.1
CD44-234ENST00000531873 HOXC4P09017 264 aaPredicted RBP1.96□□□□□ -2.1
CD44-234ENST00000531873 STAG3L2P0CL84 134 aa1.96□□□□□ -2.1
CD44-234ENST00000531873 PGA4P0DJD7 388 aa1.96□□□□□ -2.1
CD44-234ENST00000531873 PGA3P0DJD8 388 aa1.96□□□□□ -2.1
CD44-234ENST00000531873 USF1P22415 310 aaPredicted RBP1.96□□□□□ -2.1
CD44-234ENST00000531873 CEACAM3P40198 252 aa1.96□□□□□ -2.1
CD44-234ENST00000531873 CDKN2BP42772 138 aa1.96□□□□□ -2.1
CD44-234ENST00000531873 GPR1P46091 355 aa1.96□□□□□ -2.1
CD44-234ENST00000531873 ETV1P50549 477 aa1.96□□□□□ -2.1
CD44-234ENST00000531873 CCR6P51684 374 aa1.96□□□□□ -2.1
CD44-234ENST00000531873 PSMD4P55036 377 aaKnown RBP1.96□□□□□ -2.1
CD44-234ENST00000531873 XIAPP98170 497 aa1.96□□□□□ -2.1
CD44-234ENST00000531873 RCAN2Q14206 197 aa1.96□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms