RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 DHDDSQ86SQ9 333 aa2.67□□□□□ -1.98
CD44-229ENST00000528672 CATSPER3Q86XQ3 398 aa2.67□□□□□ -1.98
CD44-229ENST00000528672 RNF130Q86XS8 419 aa2.67□□□□□ -1.98
CD44-229ENST00000528672 MFSD6LQ8IWD5 586 aa2.67□□□□□ -1.98
CD44-229ENST00000528672 NRMQ8IXM6 262 aa2.67□□□□□ -1.98
CD44-229ENST00000528672 LINC01561Q8N1V8 128 aa2.67□□□□□ -1.98
CD44-229ENST00000528672 STX19Q8N4C7 294 aa2.67□□□□□ -1.98
CD44-229ENST00000528672 C2orf73Q8N5S3 287 aaPredicted RBP2.67□□□□□ -1.98
CD44-229ENST00000528672 ZNF614Q8N883 585 aa2.67□□□□□ -1.98
CD44-229ENST00000528672 C15orf54Q8N8G6 183 aa2.67□□□□□ -1.98
CD44-229ENST00000528672 OR51D1Q8NGF3 324 aa2.67□□□□□ -1.98
CD44-229ENST00000528672 OR5L2Q8NGL0 311 aa2.67□□□□□ -1.98
CD44-229ENST00000528672 OR9G4Q8NGQ1 327 aa2.67□□□□□ -1.98
CD44-229ENST00000528672 OR11L1Q8NGX0 322 aa2.67□□□□□ -1.98
CD44-229ENST00000528672 BLOC1S5Q8TDH9 187 aa2.67□□□□□ -1.98
CD44-229ENST00000528672 TMEM239Q8WW34 195 aa2.67□□□□□ -1.98
CD44-229ENST00000528672 CRYGNQ8WXF5 182 aa2.67□□□□□ -1.98
CD44-229ENST00000528672 CDS1Q92903 461 aa2.67□□□□□ -1.98
CD44-229ENST00000528672 TESCQ96BS2 214 aa2.67□□□□□ -1.98
CD44-229ENST00000528672 DCPSQ96C86 337 aaKnown RBP2.67□□□□□ -1.98
CD44-229ENST00000528672 SLC45A3Q96JT2 553 aa2.67□□□□□ -1.98
CD44-229ENST00000528672 ZNF597Q96LX8 424 aa2.67□□□□□ -1.98
CD44-229ENST00000528672 TMEM56Q96MV1 263 aa2.67□□□□□ -1.98
CD44-229ENST00000528672 SERPINB11Q96P15 392 aa2.67□□□□□ -1.98
CD44-229ENST00000528672 MCCC1Q96RQ3 725 aaPredicted RBP2.67□□□□□ -1.98
CD44-229ENST00000528672 PFDN5Q99471 154 aa2.67□□□□□ -1.98
CD44-229ENST00000528672 MAP1LC3CQ9BXW4 147 aa2.67□□□□□ -1.98
CD44-229ENST00000528672 ULBP1Q9BZM6 244 aa2.67□□□□□ -1.98
CD44-229ENST00000528672 IKZF5Q9H5V7 419 aa2.67□□□□□ -1.98
CD44-229ENST00000528672 SMYD3Q9H7B4 428 aa2.67□□□□□ -1.98
CD44-229ENST00000528672 KIR3DX1Q9H7L2 352 aa2.67□□□□□ -1.98
CD44-229ENST00000528672 UGT1A7Q9HAW7 530 aa2.67□□□□□ -1.98
CD44-229ENST00000528672 UGT1A10Q9HAW8 530 aa2.67□□□□□ -1.98
CD44-229ENST00000528672 UGT1A8Q9HAW9 530 aa2.67□□□□□ -1.98
CD44-229ENST00000528672 MEPEQ9NQ76 525 aaPredicted RBP2.67□□□□□ -1.98
CD44-229ENST00000528672 NANSQ9NR45 359 aa2.67□□□□□ -1.98
CD44-229ENST00000528672 DDX19AQ9NUU7 478 aaKnown RBP2.67□□□□□ -1.98
CD44-229ENST00000528672 NECAP2Q9NVZ3 263 aa2.67□□□□□ -1.98
CD44-229ENST00000528672 PLEKHJ1Q9NW61 149 aa2.67□□□□□ -1.98
CD44-229ENST00000528672 BABAM2Q9NXR7 383 aa2.67□□□□□ -1.98
CD44-229ENST00000528672 SIGLEC8Q9NYZ4 499 aa2.67□□□□□ -1.98
CD44-229ENST00000528672 PAK5Q9P286 719 aa2.67□□□□□ -1.98
CD44-229ENST00000528672 PITPNC1Q9UKF7 332 aa2.67□□□□□ -1.98
CD44-229ENST00000528672 NXT1Q9UKK6 140 aaKnown RBP2.67□□□□□ -1.98
CD44-229ENST00000528672 OR52A1Q9UKL2 312 aa2.67□□□□□ -1.98
CD44-229ENST00000528672 MOKQ9UQ07 419 aa2.67□□□□□ -1.98
CD44-229ENST00000528672 TMEM56-RWDD3S4R434 201 aa2.67□□□□□ -1.98
CD44-229ENST00000528672 SOGA1O94964 1423 aa2.67□□□□□ -1.98
CD44-229ENST00000528672 USP6P35125 1406 aa2.67□□□□□ -1.98
CD44-229ENST00000528672 ADGRL1O94910 1474 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 ARHGEF10O15013 1369 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 MSH6P52701 1360 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 IGLV7-46A0A075B6I9 117 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 IGLV4-3A0A075B6K6 122 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 A0A1B0GV72 72 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 A0A1W2PRG6 482 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 SAGE2PA6NJ88 616 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 PP2D1A8MPX8 630 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 CYSRT1A8MQ03 144 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 LOC110117498-PIK3R3F6TDL0 507 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 H3BMQ9 156 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 K7EP13 123 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 M0QZ92 97 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 PSMD12O00232 456 aaPredicted RBP2.66□□□□□ -1.98
CD44-229ENST00000528672 KPNA3O00505 521 aaPredicted RBP2.66□□□□□ -1.98
CD44-229ENST00000528672 FCN1O00602 326 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 XRCC2O43543 280 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 LATO43561 262 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 KLRC4O43908 158 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 SHOX2O60902 331 aaPredicted RBP2.66□□□□□ -1.98
CD44-229ENST00000528672 HUS1O60921 280 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 ENTPD5O75356 428 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 POP7O75817 140 aaKnown RBP2.66□□□□□ -1.98
CD44-229ENST00000528672 CLDN9O95484 217 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 CYB5R3P00387 301 aaPredicted RBP2.66□□□□□ -1.98
CD44-229ENST00000528672 IFNA21P01568 189 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 IGHV3-9P01782 118 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 ETS2P15036 469 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 CD82P27701 267 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 GCAP28676 217 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 SLC6A1P30531 599 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 CALCRP30988 508 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 PCK1P35558 622 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 CEACAM6P40199 344 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 IDH2P48735 452 aaKnown RBP2.66□□□□□ -1.98
CD44-229ENST00000528672 CCR6P51684 374 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 CRIP2P52943 208 aaPredicted RBP2.66□□□□□ -1.98
CD44-229ENST00000528672 CRYBA4P53673 196 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 RPL8P62917 257 aaKnown RBP2.66□□□□□ -1.98
CD44-229ENST00000528672 OGDHQ02218 1023 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 OC90Q02509 493 aaPredicted RBP2.66□□□□□ -1.98
CD44-229ENST00000528672 CKAP4Q07065 602 aaKnown RBP2.66□□□□□ -1.98
CD44-229ENST00000528672 BST2Q10589 180 aaKnown RBP2.66□□□□□ -1.98
CD44-229ENST00000528672 ASAH1Q13510 395 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 APOFQ13790 326 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 LAGE3Q14657 143 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 SIX1Q15475 284 aaPredicted RBP2.66□□□□□ -1.98
CD44-229ENST00000528672 TRIP13Q15645 432 aaPredicted RBP2.66□□□□□ -1.98
CD44-229ENST00000528672 ATP6AP1Q15904 470 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 TNXAQ16473 311 aa2.66□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms