RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 HIST3H3Q16695 136 aa10.3□□□□□ -0.76
LIMCH1-217ENST00000512946 OR5AR1Q8NGP9 310 aa10.3□□□□□ -0.76
LIMCH1-217ENST00000512946 ZNF2Q9BSG1 426 aaPredicted RBP10.3□□□□□ -0.76
LIMCH1-217ENST00000512946 PSENENQ9NZ42 101 aa10.3□□□□□ -0.76
LIMCH1-217ENST00000512946 SERPINE3A8MV23 424 aa10.3□□□□□ -0.76
LIMCH1-217ENST00000512946 RPA2P15927 270 aa10.3□□□□□ -0.76
LIMCH1-217ENST00000512946 PAFAH1B2P68402 229 aa10.3□□□□□ -0.76
LIMCH1-217ENST00000512946 SPANXN5Q5MJ07 72 aa10.3□□□□□ -0.76
LIMCH1-217ENST00000512946 OR5M10Q6IEU7 315 aa10.3□□□□□ -0.76
LIMCH1-217ENST00000512946 C12orf54Q6X4T0 127 aa10.3□□□□□ -0.76
LIMCH1-217ENST00000512946 TMEM64Q6YI46 380 aa10.3□□□□□ -0.76
LIMCH1-217ENST00000512946 SLC16A13Q7RTY0 426 aa10.3□□□□□ -0.76
LIMCH1-217ENST00000512946 OR2T10Q8NGZ9 312 aa10.3□□□□□ -0.76
LIMCH1-217ENST00000512946 SLC25A43Q8WUT9 341 aaPredicted RBP10.3□□□□□ -0.76
LIMCH1-217ENST00000512946 ADGRG7Q96K78 797 aa10.3□□□□□ -0.76
LIMCH1-217ENST00000512946 NMNAT3Q96T66 252 aa10.3□□□□□ -0.76
LIMCH1-217ENST00000512946 TEAD3Q99594 435 aa10.3□□□□□ -0.76
LIMCH1-217ENST00000512946 MENTQ9BUN1 341 aa10.3□□□□□ -0.76
LIMCH1-217ENST00000512946 IKZF5Q9H5V7 419 aa10.3□□□□□ -0.76
LIMCH1-217ENST00000512946 NXT1Q9UKK6 140 aaKnown RBP10.3□□□□□ -0.76
LIMCH1-217ENST00000512946 EMC9Q9Y3B6 208 aa10.3□□□□□ -0.76
LIMCH1-217ENST00000512946 BCL9O00512 1426 aa10.3□□□□□ -0.76
LIMCH1-217ENST00000512946 ZAR1LA6NP61 321 aa10.29□□□□□ -0.76
LIMCH1-217ENST00000512946 COCHO43405 550 aa10.29□□□□□ -0.76
LIMCH1-217ENST00000512946 GALR2O43603 387 aaPredicted RBP10.29□□□□□ -0.76
LIMCH1-217ENST00000512946 WDR1O75083 606 aa10.29□□□□□ -0.76
LIMCH1-217ENST00000512946 MRPL33O75394 65 aaKnown RBP10.29□□□□□ -0.76
LIMCH1-217ENST00000512946 CRISP2P16562 243 aa10.29□□□□□ -0.76
LIMCH1-217ENST00000512946 HOXC13P31276 330 aa10.29□□□□□ -0.76
LIMCH1-217ENST00000512946 FLT3LGP49771 235 aa10.29□□□□□ -0.76
LIMCH1-217ENST00000512946 ERVS71-1P61550 626 aa10.29□□□□□ -0.76
LIMCH1-217ENST00000512946 OR5I1Q13606 314 aa10.29□□□□□ -0.76
LIMCH1-217ENST00000512946 ATP6V1FQ16864 119 aa10.29□□□□□ -0.76
LIMCH1-217ENST00000512946 ZNF765Q7L2R6 523 aa10.29□□□□□ -0.76
LIMCH1-217ENST00000512946 TMEM104Q8NE00 496 aa10.29□□□□□ -0.76
LIMCH1-217ENST00000512946 RAB40CQ96S21 281 aa10.29□□□□□ -0.76
LIMCH1-217ENST00000512946 INSL6Q9Y581 213 aa10.29□□□□□ -0.76
LIMCH1-217ENST00000512946 NDUFB6O95139 128 aa10.29□□□□□ -0.76
LIMCH1-217ENST00000512946 NXPH2O95156 264 aa10.29□□□□□ -0.76
LIMCH1-217ENST00000512946 ATXN1LP0C7T5 689 aaKnown RBP10.29□□□□□ -0.76
LIMCH1-217ENST00000512946 PSMB2P49721 201 aa10.29□□□□□ -0.76
LIMCH1-217ENST00000512946 DRAM2Q6UX65 266 aa10.29□□□□□ -0.76
LIMCH1-217ENST00000512946 BPIFA4PQ86YQ2 179 aa10.29□□□□□ -0.76
LIMCH1-217ENST00000512946 OR2D3Q8NGH3 330 aa10.29□□□□□ -0.76
LIMCH1-217ENST00000512946 PRSS3P2Q8NHM4 247 aa10.29□□□□□ -0.76
LIMCH1-217ENST00000512946 IGSF8Q969P0 613 aa10.29□□□□□ -0.76
LIMCH1-217ENST00000512946 GPR137Q96N19 417 aa10.29□□□□□ -0.76
LIMCH1-217ENST00000512946 CPEB1Q9BZB8 566 aaKnown RBP10.29□□□□□ -0.76
LIMCH1-217ENST00000512946 OCEL1Q9H607 264 aa10.29□□□□□ -0.76
LIMCH1-217ENST00000512946 CMC2Q9NRP2 79 aa10.29□□□□□ -0.76
LIMCH1-217ENST00000512946 BOKQ9UMX3 212 aaPredicted RBP10.29□□□□□ -0.76
LIMCH1-217ENST00000512946 SLC5A6Q9Y289 635 aa10.29□□□□□ -0.76
LIMCH1-217ENST00000512946 TMEM238LA0A1B0GVL6 79 aa10.29□□□□□ -0.76
LIMCH1-217ENST00000512946 MAP1LC3B2A6NCE7 125 aa10.29□□□□□ -0.76
LIMCH1-217ENST00000512946 A6NJY4 79 aa10.29□□□□□ -0.76
LIMCH1-217ENST00000512946 FCN1O00602 326 aa10.29□□□□□ -0.76
LIMCH1-217ENST00000512946 POU3F2P20265 443 aaPredicted RBP10.29□□□□□ -0.76
LIMCH1-217ENST00000512946 CD68P34810 354 aaPredicted RBP10.29□□□□□ -0.76
LIMCH1-217ENST00000512946 VASPP50552 380 aaPredicted RBP10.29□□□□□ -0.76
LIMCH1-217ENST00000512946 CLDN10P78369 228 aa10.29□□□□□ -0.76
LIMCH1-217ENST00000512946 TMEM268Q5VZI3 342 aa10.29□□□□□ -0.76
LIMCH1-217ENST00000512946 MAMDC4Q6UXC1 1216 aa10.29□□□□□ -0.76
LIMCH1-217ENST00000512946 PRICKLE2Q7Z3G6 844 aa10.29□□□□□ -0.76
LIMCH1-217ENST00000512946 FAM24BQ8N5W8 94 aa10.29□□□□□ -0.76
LIMCH1-217ENST00000512946 OR5AU1Q8NGC0 362 aa10.29□□□□□ -0.76
LIMCH1-217ENST00000512946 LILRB1Q8NHL6 650 aaPredicted RBP10.29□□□□□ -0.76
LIMCH1-217ENST00000512946 LIPHQ8WWY8 451 aa10.29□□□□□ -0.76
LIMCH1-217ENST00000512946 MAP1LC3BQ9GZQ8 125 aa10.29□□□□□ -0.76
LIMCH1-217ENST00000512946 CYSLTR2Q9NS75 346 aa10.29□□□□□ -0.76
LIMCH1-217ENST00000512946 NAT8Q9UHE5 227 aa10.29□□□□□ -0.76
LIMCH1-217ENST00000512946 SLC45A2Q9UMX9 530 aa10.29□□□□□ -0.76
LIMCH1-217ENST00000512946 NOSIPQ9Y314 301 aaKnown RBP10.29□□□□□ -0.76
LIMCH1-217ENST00000512946 FZD9O00144 591 aa10.29□□□□□ -0.76
LIMCH1-217ENST00000512946 ST8SIA5O15466 376 aa10.29□□□□□ -0.76
LIMCH1-217ENST00000512946 CARD18P57730 90 aa10.29□□□□□ -0.76
LIMCH1-217ENST00000512946 SNRPNP63162 240 aaKnown RBP10.29□□□□□ -0.76
LIMCH1-217ENST00000512946 FPGSQ05932 587 aa10.29□□□□□ -0.76
LIMCH1-217ENST00000512946 DSC1Q08554 894 aa10.29□□□□□ -0.76
LIMCH1-217ENST00000512946 MIDNQ504T8 468 aa10.29□□□□□ -0.76
LIMCH1-217ENST00000512946 RNASEKQ6P5S7 137 aaKnown RBP10.29□□□□□ -0.76
LIMCH1-217ENST00000512946 Q6ZPB1 254 aaPredicted RBP10.29□□□□□ -0.76
LIMCH1-217ENST00000512946 STARD4Q96DR4 205 aa10.29□□□□□ -0.76
LIMCH1-217ENST00000512946 SMIM19Q96E16 107 aa10.29□□□□□ -0.76
LIMCH1-217ENST00000512946 NXF2Q9GZY0 626 aaKnown RBP10.29□□□□□ -0.76
LIMCH1-217ENST00000512946 A0A1W2PQU0 124 aa10.28□□□□□ -0.76
LIMCH1-217ENST00000512946 LRRC3CA6NJW4 275 aa10.28□□□□□ -0.76
LIMCH1-217ENST00000512946 TMX2-CTNND1H3BSU7 103 aa10.28□□□□□ -0.76
LIMCH1-217ENST00000512946 P2RY10O00398 339 aa10.28□□□□□ -0.76
LIMCH1-217ENST00000512946 MBPP02686 304 aaPredicted RBP10.28□□□□□ -0.76
LIMCH1-217ENST00000512946 GP1BAP07359 652 aa10.28□□□□□ -0.76
LIMCH1-217ENST00000512946 ZNF888P0CJ79 500 aaPredicted RBP10.28□□□□□ -0.76
LIMCH1-217ENST00000512946 DEFA4P12838 97 aa10.28□□□□□ -0.76
LIMCH1-217ENST00000512946 TEAD1P28347 426 aa10.28□□□□□ -0.76
LIMCH1-217ENST00000512946 CD200P41217 278 aa10.28□□□□□ -0.76
LIMCH1-217ENST00000512946 TEAD2Q15562 447 aa10.28□□□□□ -0.76
LIMCH1-217ENST00000512946 PRSS45Q7RTY3 260 aa10.28□□□□□ -0.76
LIMCH1-217ENST00000512946 REC114Q7Z4M0 266 aa10.28□□□□□ -0.76
LIMCH1-217ENST00000512946 CAMKMTQ7Z624 323 aa10.28□□□□□ -0.76
LIMCH1-217ENST00000512946 OR10A7Q8NGE5 316 aa10.28□□□□□ -0.76
LIMCH1-217ENST00000512946 EDARADDQ8WWZ3 215 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms