RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 ZNF14P17017 642 aaPredicted RBP1.85□□□□□ -2.11
VPS50-219ENST00000495039 RAB3AP20336 220 aa1.85□□□□□ -2.11
VPS50-219ENST00000495039 RRM2P31350 389 aa1.85□□□□□ -2.11
VPS50-219ENST00000495039 OPRK1P41145 380 aa1.85□□□□□ -2.11
VPS50-219ENST00000495039 SLC1A1P43005 524 aa1.85□□□□□ -2.11
VPS50-219ENST00000495039 HCAR3P49019 387 aa1.85□□□□□ -2.11
VPS50-219ENST00000495039 SLC11A1P49279 550 aa1.85□□□□□ -2.11
VPS50-219ENST00000495039 P2RX1P51575 399 aa1.85□□□□□ -2.11
VPS50-219ENST00000495039 CDH6P55285 790 aa1.85□□□□□ -2.11
VPS50-219ENST00000495039 RCAN2Q14206 197 aa1.85□□□□□ -2.11
VPS50-219ENST00000495039 PIGHQ14442 188 aaPredicted RBP1.85□□□□□ -2.11
VPS50-219ENST00000495039 CHRFAM7AQ494W8 412 aa1.85□□□□□ -2.11
VPS50-219ENST00000495039 SOHLH1Q5JUK2 328 aa1.85□□□□□ -2.11
VPS50-219ENST00000495039 RAET1LQ5VY80 246 aa1.85□□□□□ -2.11
VPS50-219ENST00000495039 SNX20Q7Z614 316 aa1.85□□□□□ -2.11
VPS50-219ENST00000495039 NECAP1Q8NC96 275 aa1.85□□□□□ -2.11
VPS50-219ENST00000495039 OR4K5Q8NGD3 323 aa1.85□□□□□ -2.11
VPS50-219ENST00000495039 OR52P1PQ8NH57 321 aa1.85□□□□□ -2.11
VPS50-219ENST00000495039 ACMSDQ8TDX5 336 aa1.85□□□□□ -2.11
VPS50-219ENST00000495039 ESR2Q92731 530 aa1.85□□□□□ -2.11
VPS50-219ENST00000495039 EEF1AKMT3Q96AZ1 226 aa1.85□□□□□ -2.11
VPS50-219ENST00000495039 FOXC2Q99958 501 aa1.85□□□□□ -2.11
VPS50-219ENST00000495039 MICU1Q9BPX6 476 aa1.85□□□□□ -2.11
VPS50-219ENST00000495039 LZTS2Q9BRK4 669 aa1.85□□□□□ -2.11
VPS50-219ENST00000495039 NUP58Q9BVL2 599 aa1.85□□□□□ -2.11
VPS50-219ENST00000495039 IGLV1-36A0A0B4J1U3 117 aa1.84□□□□□ -2.11
VPS50-219ENST00000495039 ZNF716A6NP11 495 aa1.84□□□□□ -2.11
VPS50-219ENST00000495039 C9JVG2 144 aa1.84□□□□□ -2.11
VPS50-219ENST00000495039 RPL36A-HNRNPH2H7BZ11 118 aa1.84□□□□□ -2.11
VPS50-219ENST00000495039 L7N2F9 121 aa1.84□□□□□ -2.11
VPS50-219ENST00000495039 UBXN8O00124 270 aa1.84□□□□□ -2.11
VPS50-219ENST00000495039 LSM1O15116 133 aaKnown RBP1.84□□□□□ -2.11
VPS50-219ENST00000495039 CDC40O60508 579 aaKnown RBP eCLIP1.84□□□□□ -2.11
VPS50-219ENST00000495039 FKBP6O75344 327 aa1.84□□□□□ -2.11
VPS50-219ENST00000495039 CCNKO75909 580 aa1.84□□□□□ -2.11
VPS50-219ENST00000495039 CCNE2O96020 404 aa1.84□□□□□ -2.11
VPS50-219ENST00000495039 IL4P05112 153 aa1.84□□□□□ -2.11
VPS50-219ENST00000495039 EIF4EP06730 217 aaKnown RBP1.84□□□□□ -2.11
VPS50-219ENST00000495039 DCNP07585 359 aaKnown RBP1.84□□□□□ -2.11
VPS50-219ENST00000495039 ZNF735P0CB33 412 aa1.84□□□□□ -2.11
VPS50-219ENST00000495039 GGT1P19440 569 aa1.84□□□□□ -2.11
VPS50-219ENST00000495039 EIF2S2P20042 333 aaKnown RBP1.84□□□□□ -2.11
VPS50-219ENST00000495039 PITPNAQ00169 270 aa1.84□□□□□ -2.11
VPS50-219ENST00000495039 MRPL23Q16540 153 aaKnown RBP1.84□□□□□ -2.11
VPS50-219ENST00000495039 SAXO2Q658L1 398 aa1.84□□□□□ -2.11
VPS50-219ENST00000495039 REEP3Q6NUK4 255 aa1.84□□□□□ -2.11
VPS50-219ENST00000495039 TMEM205Q6UW68 189 aa1.84□□□□□ -2.11
VPS50-219ENST00000495039 SLC16A14Q7RTX9 510 aa1.84□□□□□ -2.11
VPS50-219ENST00000495039 CMC1Q7Z7K0 106 aa1.84□□□□□ -2.11
VPS50-219ENST00000495039 CDH26Q8IXH8 852 aa1.84□□□□□ -2.11
VPS50-219ENST00000495039 CMTM1Q8IZ96 169 aa1.84□□□□□ -2.11
VPS50-219ENST00000495039 IQCKQ8N0W5 287 aa1.84□□□□□ -2.11
VPS50-219ENST00000495039 LILRB4Q8NHJ6 448 aa1.84□□□□□ -2.11
VPS50-219ENST00000495039 LRRC29Q8WV35 223 aa1.84□□□□□ -2.11
VPS50-219ENST00000495039 ELMO1Q92556 727 aa1.84□□□□□ -2.11
VPS50-219ENST00000495039 ECHDC3Q96DC8 303 aa1.84□□□□□ -2.11
VPS50-219ENST00000495039 NEURL3Q96EH8 262 aa1.84□□□□□ -2.11
VPS50-219ENST00000495039 RNF5Q99942 180 aa1.84□□□□□ -2.11
VPS50-219ENST00000495039 OSBPL11Q9BXB4 747 aa1.84□□□□□ -2.11
VPS50-219ENST00000495039 EDA2RQ9HAV5 297 aa1.84□□□□□ -2.11
VPS50-219ENST00000495039 PITPNC1Q9UKF7 332 aa1.84□□□□□ -2.11
VPS50-219ENST00000495039 VANGL2Q9ULK5 521 aa1.84□□□□□ -2.11
VPS50-219ENST00000495039 DENND4AQ7Z401 1863 aa1.84□□□□□ -2.12
VPS50-219ENST00000495039 TRBV11-1A0A0K0K1C0 115 aa1.83□□□□□ -2.12
VPS50-219ENST00000495039 ZNF850A8MQ14 1090 aa1.83□□□□□ -2.12
VPS50-219ENST00000495039 SMKR1H3BMG3 65 aa1.83□□□□□ -2.12
VPS50-219ENST00000495039 SIRPB1O00241 398 aa1.83□□□□□ -2.12
VPS50-219ENST00000495039 NDUFAB1O14561 156 aa1.83□□□□□ -2.12
VPS50-219ENST00000495039 H6PDO95479 791 aa1.83□□□□□ -2.12
VPS50-219ENST00000495039 FTH1P02794 183 aa1.83□□□□□ -2.12
VPS50-219ENST00000495039 CXCL12P48061 93 aa1.83□□□□□ -2.12
VPS50-219ENST00000495039 CDKN2DP55273 166 aa1.83□□□□□ -2.12
VPS50-219ENST00000495039 EIF3EP60228 445 aaKnown RBP1.83□□□□□ -2.12
VPS50-219ENST00000495039 RAB10P61026 200 aa1.83□□□□□ -2.12
VPS50-219ENST00000495039 CACNG7P62955 275 aa1.83□□□□□ -2.12
VPS50-219ENST00000495039 ZNF816Q0VGE8 651 aaPredicted RBP1.83□□□□□ -2.12
VPS50-219ENST00000495039 CDC20Q12834 499 aa1.83□□□□□ -2.12
VPS50-219ENST00000495039 ZNF726P1Q15940 193 aa1.83□□□□□ -2.12
VPS50-219ENST00000495039 KRTAP13-2Q52LG2 175 aa1.83□□□□□ -2.12
VPS50-219ENST00000495039 TCEAL5Q5H9L2 206 aa1.83□□□□□ -2.12
VPS50-219ENST00000495039 AVPI1Q5T686 147 aa1.83□□□□□ -2.12
VPS50-219ENST00000495039 UBE2UQ5VVX9 321 aa1.83□□□□□ -2.12
VPS50-219ENST00000495039 GPR107Q5VW38 600 aa1.83□□□□□ -2.12
VPS50-219ENST00000495039 AP1ARQ63HQ0 302 aa1.83□□□□□ -2.12
VPS50-219ENST00000495039 C22orf42Q6IC83 251 aa1.83□□□□□ -2.12
VPS50-219ENST00000495039 ZFP1Q6P2D0 407 aa1.83□□□□□ -2.12
VPS50-219ENST00000495039 MBOAT1Q6ZNC8 495 aa1.83□□□□□ -2.12
VPS50-219ENST00000495039 CDKL3Q8IVW4 592 aaPredicted RBP1.83□□□□□ -2.12
VPS50-219ENST00000495039 WDFY1Q8IWB7 410 aa1.83□□□□□ -2.12
VPS50-219ENST00000495039 MYOCDQ8IZQ8 938 aa1.83□□□□□ -2.12
VPS50-219ENST00000495039 CHST4Q8NCG5 386 aa1.83□□□□□ -2.12
VPS50-219ENST00000495039 OR4A4PQ8NGN8 299 aa1.83□□□□□ -2.12
VPS50-219ENST00000495039 LINC01560Q8TB33 94 aa1.83□□□□□ -2.12
VPS50-219ENST00000495039 RAB3IL1Q8TBN0 382 aa1.83□□□□□ -2.12
VPS50-219ENST00000495039 TCEAL3Q969E4 200 aa1.83□□□□□ -2.12
VPS50-219ENST00000495039 SLC38A4Q969I6 547 aa1.83□□□□□ -2.12
VPS50-219ENST00000495039 TMEM230Q96A57 120 aa1.83□□□□□ -2.12
VPS50-219ENST00000495039 PTX4Q96A99 478 aa1.83□□□□□ -2.12
VPS50-219ENST00000495039 HSD17B10Q99714 261 aaKnown RBP1.83□□□□□ -2.12
VPS50-219ENST00000495039 ULBP2Q9BZM5 246 aa1.83□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms