RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 PPICP45877 212 aa14.81□□□□□ -0.04
CCDC88B-209ENST00000494080 FXYD4P59646 89 aa14.81□□□□□ -0.04
CCDC88B-209ENST00000494080 SOHLH1Q5JUK2 328 aa14.81□□□□□ -0.04
CCDC88B-209ENST00000494080 C1orf140Q5VVS0 124 aa14.81□□□□□ -0.04
CCDC88B-209ENST00000494080 SLC16A13Q7RTY0 426 aa14.81□□□□□ -0.04
CCDC88B-209ENST00000494080 NAXDQ8IW45 347 aa14.81□□□□□ -0.04
CCDC88B-209ENST00000494080 OR4K15Q8NH41 348 aa14.81□□□□□ -0.04
CCDC88B-209ENST00000494080 GIMAP5Q96F15 307 aa14.81□□□□□ -0.04
CCDC88B-209ENST00000494080 FAM60AQ9NP50 221 aa14.81□□□□□ -0.04
CCDC88B-209ENST00000494080 NTMQ9P121 344 aa14.81□□□□□ -0.04
CCDC88B-209ENST00000494080 WIF1Q9Y5W5 379 aa14.81□□□□□ -0.04
CCDC88B-209ENST00000494080 IL5P05113 134 aa14.81□□□□□ -0.04
CCDC88B-209ENST00000494080 GLULP15104 373 aa14.81□□□□□ -0.04
CCDC88B-209ENST00000494080 LSM11P83369 360 aaKnown RBP eCLIP14.81□□□□□ -0.04
CCDC88B-209ENST00000494080 BAP18Q8IXM2 172 aa14.81□□□□□ -0.04
CCDC88B-209ENST00000494080 OR4D10Q8NGI6 311 aa14.81□□□□□ -0.04
CCDC88B-209ENST00000494080 OR4C3Q8NH37 302 aa14.81□□□□□ -0.04
CCDC88B-209ENST00000494080 ZDHHC19Q8WVZ1 309 aaPredicted RBP14.81□□□□□ -0.04
CCDC88B-209ENST00000494080 FAM212BQ9NTI7 297 aaPredicted RBP14.81□□□□□ -0.04
CCDC88B-209ENST00000494080 CGGBP1Q9UFW8 167 aaPredicted RBP14.81□□□□□ -0.04
CCDC88B-209ENST00000494080 RHBDD3Q9Y3P4 386 aa14.81□□□□□ -0.04
CCDC88B-209ENST00000494080 MYO16Q9Y6X6 1858 aa14.81□□□□□ -0.04
CCDC88B-209ENST00000494080 CCDC88CQ9P219 2028 aa14.81□□□□□ -0.04
CCDC88B-209ENST00000494080 LOC100289279A0A1B0GTE1 492 aa14.8□□□□□ -0.04
CCDC88B-209ENST00000494080 GJE1A6NN92 205 aa14.8□□□□□ -0.04
CCDC88B-209ENST00000494080 GPR31O00270 319 aa14.8□□□□□ -0.04
CCDC88B-209ENST00000494080 TFF2Q03403 129 aa14.8□□□□□ -0.04
CCDC88B-209ENST00000494080 ZNF273Q14593 569 aa14.8□□□□□ -0.04
CCDC88B-209ENST00000494080 C9orf135Q5VTT2 229 aa14.8□□□□□ -0.04
CCDC88B-209ENST00000494080 COMTD1Q86VU5 262 aa14.8□□□□□ -0.04
CCDC88B-209ENST00000494080 GABRG3Q99928 467 aa14.8□□□□□ -0.04
CCDC88B-209ENST00000494080 WDR76Q9H967 626 aa14.8□□□□□ -0.04
CCDC88B-209ENST00000494080 TRAV1-2A0A0B4J238 106 aa14.8□□□□□ -0.04
CCDC88B-209ENST00000494080 C7orf66A4D0T2 115 aa14.8□□□□□ -0.04
CCDC88B-209ENST00000494080 BET1O15155 118 aa14.8□□□□□ -0.04
CCDC88B-209ENST00000494080 NDUFB6O95139 128 aa14.8□□□□□ -0.04
CCDC88B-209ENST00000494080 GABRA1P14867 456 aa14.8□□□□□ -0.04
CCDC88B-209ENST00000494080 EIF2S3P41091 472 aaKnown RBP14.8□□□□□ -0.04
CCDC88B-209ENST00000494080 MLC1Q15049 377 aa14.8□□□□□ -0.04
CCDC88B-209ENST00000494080 OR5B12Q96R08 314 aa14.8□□□□□ -0.04
CCDC88B-209ENST00000494080 ULBP2Q9BZM5 246 aa14.8□□□□□ -0.04
CCDC88B-209ENST00000494080 LRFN1Q9P244 771 aa14.8□□□□□ -0.04
CCDC88B-209ENST00000494080 EMC9Q9Y3B6 208 aa14.8□□□□□ -0.04
CCDC88B-209ENST00000494080 LCTP09848 1927 aa14.8□□□□□ -0.04
CCDC88B-209ENST00000494080 NRG2O14511 850 aaPredicted RBP14.8□□□□□ -0.04
CCDC88B-209ENST00000494080 IMPA2O14732 288 aa14.8□□□□□ -0.04
CCDC88B-209ENST00000494080 ICOSLGO75144 302 aa14.8□□□□□ -0.04
CCDC88B-209ENST00000494080 ARF1P84077 181 aaKnown RBP14.8□□□□□ -0.04
CCDC88B-209ENST00000494080 LRRC18Q8N456 261 aa14.8□□□□□ -0.04
CCDC88B-209ENST00000494080 OR4D9Q8NGE8 314 aa14.8□□□□□ -0.04
CCDC88B-209ENST00000494080 SCGB1C1Q8TD33 95 aa14.8□□□□□ -0.04
CCDC88B-209ENST00000494080 CLCC1Q96S66 551 aa14.8□□□□□ -0.04
CCDC88B-209ENST00000494080 ZNF442Q9H7R0 627 aa14.8□□□□□ -0.04
CCDC88B-209ENST00000494080 PURGQ9UJV8 347 aaKnown RBP14.8□□□□□ -0.04
CCDC88B-209ENST00000494080 GOLGB1Q14789 3259 aaKnown RBP14.8□□□□□ -0.04
CCDC88B-209ENST00000494080 TMEM200CA6NKL6 621 aa14.8□□□□□ -0.04
CCDC88B-209ENST00000494080 GLCEO94923 617 aa14.8□□□□□ -0.04
CCDC88B-209ENST00000494080 UBE2KP61086 200 aa14.8□□□□□ -0.04
CCDC88B-209ENST00000494080 GUCA2AQ02747 115 aa14.8□□□□□ -0.04
CCDC88B-209ENST00000494080 SPEM1Q8N4L4 309 aa14.8□□□□□ -0.04
CCDC88B-209ENST00000494080 GHITMQ9H3K2 345 aa14.8□□□□□ -0.04
CCDC88B-209ENST00000494080 AQP8O94778 261 aa14.79□□□□□ -0.04
CCDC88B-209ENST00000494080 DPP4P27487 766 aa14.79□□□□□ -0.04
CCDC88B-209ENST00000494080 RABEPKQ7Z6M1 372 aa14.79□□□□□ -0.04
CCDC88B-209ENST00000494080 SLC19A3Q9BZV2 496 aa14.79□□□□□ -0.04
CCDC88B-209ENST00000494080 ASH2LQ9UBL3 628 aa14.79□□□□□ -0.04
CCDC88B-209ENST00000494080 URGCP-MRPS24S4R325 110 aa14.79□□□□□ -0.04
CCDC88B-209ENST00000494080 RAD51DO75771 328 aa14.79□□□□□ -0.04
CCDC88B-209ENST00000494080 TXNDC12O95881 172 aa14.79□□□□□ -0.04
CCDC88B-209ENST00000494080 PPA1Q15181 289 aa14.79□□□□□ -0.04
CCDC88B-209ENST00000494080 PDZD11Q5EBL8 140 aa14.79□□□□□ -0.04
CCDC88B-209ENST00000494080 UBE3DQ7Z6J8 389 aa14.79□□□□□ -0.04
CCDC88B-209ENST00000494080 SFTPA2Q8IWL1 248 aa14.79□□□□□ -0.04
CCDC88B-209ENST00000494080 SYS1Q8N2H4 156 aa14.79□□□□□ -0.04
CCDC88B-209ENST00000494080 OR11H4Q8NGC9 324 aa14.79□□□□□ -0.04
CCDC88B-209ENST00000494080 OR51T1Q8NGJ9 327 aa14.79□□□□□ -0.04
CCDC88B-209ENST00000494080 OR5D14Q8NGL3 314 aa14.79□□□□□ -0.04
CCDC88B-209ENST00000494080 MIB2Q96AX9 1013 aa14.79□□□□□ -0.04
CCDC88B-209ENST00000494080 SLCO5A1Q9H2Y9 848 aa14.79□□□□□ -0.04
CCDC88B-209ENST00000494080 H0YIG0 161 aa14.79□□□□□ -0.04
CCDC88B-209ENST00000494080 AKR7A3O95154 331 aa14.79□□□□□ -0.04
CCDC88B-209ENST00000494080 IFNA5P01569 189 aa14.79□□□□□ -0.04
CCDC88B-209ENST00000494080 ZNF16P17020 682 aaPredicted RBP14.79□□□□□ -0.04
CCDC88B-209ENST00000494080 CLDN17P56750 224 aa14.79□□□□□ -0.04
CCDC88B-209ENST00000494080 SLC26A5P58743 744 aa14.79□□□□□ -0.04
CCDC88B-209ENST00000494080 SNRPNP63162 240 aaKnown RBP14.79□□□□□ -0.04
CCDC88B-209ENST00000494080 RIN1Q13671 783 aa14.79□□□□□ -0.04
CCDC88B-209ENST00000494080 RSU1Q15404 277 aa14.79□□□□□ -0.04
CCDC88B-209ENST00000494080 HMGN3Q15651 99 aa14.79□□□□□ -0.04
CCDC88B-209ENST00000494080 MPEG1Q2M385 716 aa14.79□□□□□ -0.04
CCDC88B-209ENST00000494080 OR2W3Q7Z3T1 314 aa14.79□□□□□ -0.04
CCDC88B-209ENST00000494080 MUC20Q8N307 709 aaPredicted RBP14.79□□□□□ -0.04
CCDC88B-209ENST00000494080 NPAS1Q99742 590 aa14.79□□□□□ -0.04
CCDC88B-209ENST00000494080 LSM2Q9Y333 95 aaKnown RBP14.79□□□□□ -0.04
CCDC88B-209ENST00000494080 A6NCN8 305 aa14.78□□□□□ -0.04
CCDC88B-209ENST00000494080 TMEM235A6NFC5 223 aa14.78□□□□□ -0.04
CCDC88B-209ENST00000494080 RFPL4AA6NLU0 287 aa14.78□□□□□ -0.04
CCDC88B-209ENST00000494080 RFPL4AL1F8VTS6 287 aa14.78□□□□□ -0.04
CCDC88B-209ENST00000494080 TBX19O60806 448 aa14.78□□□□□ -0.04
CCDC88B-209ENST00000494080 PSMB6P28072 239 aa14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms