RNA–Protein interactions for RNA: ENST00000493695.1

SMC4-223, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-223ENST00000493695 ZNF615Q8N8J6 731 aa1.99□□□□□ -2.09
SMC4-223ENST00000493695 NARS2Q96I59 477 aaKnown RBP1.99□□□□□ -2.09
SMC4-223ENST00000493695 DNAJC1Q96KC8 554 aaKnown RBP1.99□□□□□ -2.09
SMC4-223ENST00000493695 COL21A1Q96P44 957 aa1.99□□□□□ -2.09
SMC4-223ENST00000493695 ANKRD60Q9BZ19 345 aa1.99□□□□□ -2.09
SMC4-223ENST00000493695 TMEM9BQ9NQ34 198 aa1.99□□□□□ -2.09
SMC4-223ENST00000493695 SIRT7Q9NRC8 400 aa1.99□□□□□ -2.09
SMC4-223ENST00000493695 FAM49BQ9NUQ9 324 aa1.99□□□□□ -2.09
SMC4-223ENST00000493695 DDX19AQ9NUU7 478 aaKnown RBP1.99□□□□□ -2.09
SMC4-223ENST00000493695 SLC17A4Q9Y2C5 497 aa1.99□□□□□ -2.09
SMC4-223ENST00000493695 NSD2O96028 1365 aa1.98□□□□□ -2.09
SMC4-223ENST00000493695 SMCO3A2RU48 225 aa1.98□□□□□ -2.09
SMC4-223ENST00000493695 COLCA2A8K830 154 aa1.98□□□□□ -2.09
SMC4-223ENST00000493695 LYRM9A8MSI8 78 aa1.98□□□□□ -2.09
SMC4-223ENST00000493695 SMKR1H3BMG3 65 aa1.98□□□□□ -2.09
SMC4-223ENST00000493695 K7EMT4 169 aa1.98□□□□□ -2.09
SMC4-223ENST00000493695 ERLIN1O75477 346 aa1.98□□□□□ -2.09
SMC4-223ENST00000493695 WBP4O75554 376 aaKnown RBP1.98□□□□□ -2.09
SMC4-223ENST00000493695 H6PDO95479 791 aa1.98□□□□□ -2.09
SMC4-223ENST00000493695 ACSM4P0C7M7 580 aa1.98□□□□□ -2.09
SMC4-223ENST00000493695 ZNF14P17017 642 aaPredicted RBP1.98□□□□□ -2.09
SMC4-223ENST00000493695 CX3CR1P49238 355 aa1.98□□□□□ -2.09
SMC4-223ENST00000493695 BEX3Q00994 111 aa1.98□□□□□ -2.09
SMC4-223ENST00000493695 CDH17Q12864 832 aa1.98□□□□□ -2.09
SMC4-223ENST00000493695 CHRFAM7AQ494W8 412 aa1.98□□□□□ -2.09
SMC4-223ENST00000493695 METTL21CQ5VZV1 264 aa1.98□□□□□ -2.09
SMC4-223ENST00000493695 CDKL3Q8IVW4 592 aaPredicted RBP1.98□□□□□ -2.09
SMC4-223ENST00000493695 CMTM1Q8IZ96 169 aa1.98□□□□□ -2.09
SMC4-223ENST00000493695 TTC5Q8N0Z6 440 aa1.98□□□□□ -2.09
SMC4-223ENST00000493695 ZFP41Q8N8Y5 198 aa1.98□□□□□ -2.09
SMC4-223ENST00000493695 C11orf72Q8NBR9 251 aa1.98□□□□□ -2.09
SMC4-223ENST00000493695 OR10AD1Q8NGE0 317 aa1.98□□□□□ -2.09
SMC4-223ENST00000493695 OR5B3Q8NH48 314 aa1.98□□□□□ -2.09
SMC4-223ENST00000493695 C17orf50Q8WW18 174 aa1.98□□□□□ -2.09
SMC4-223ENST00000493695 RGP1Q92546 391 aaPredicted RBP1.98□□□□□ -2.09
SMC4-223ENST00000493695 NRGNQ92686 78 aa1.98□□□□□ -2.09
SMC4-223ENST00000493695 NTAN1Q96AB6 310 aa1.98□□□□□ -2.09
SMC4-223ENST00000493695 TMEM185BQ9H7F4 350 aa1.98□□□□□ -2.09
SMC4-223ENST00000493695 NEK6Q9HC98 313 aa1.98□□□□□ -2.09
SMC4-223ENST00000493695 CCDC59Q9P031 241 aaKnown RBP1.98□□□□□ -2.09
SMC4-223ENST00000493695 PITPNC1Q9UKF7 332 aa1.98□□□□□ -2.09
SMC4-223ENST00000493695 RABL2BQ9UNT1 228 aa1.98□□□□□ -2.09
SMC4-223ENST00000493695 WIF1Q9Y5W5 379 aa1.98□□□□□ -2.09
SMC4-223ENST00000493695 PLA2R1Q13018 1463 aa1.98□□□□□ -2.09
SMC4-223ENST00000493695 A6NDN8 102 aa1.97□□□□□ -2.09
SMC4-223ENST00000493695 DNASE2O00115 360 aaPredicted RBP1.97□□□□□ -2.09
SMC4-223ENST00000493695 DNALI1O14645 258 aaPredicted RBP1.97□□□□□ -2.09
SMC4-223ENST00000493695 RBFOX2O43251 390 aaKnown RBP eCLIP1.97□□□□□ -2.09
SMC4-223ENST00000493695 FKBP6O75344 327 aa1.97□□□□□ -2.09
SMC4-223ENST00000493695 VAMP5O95183 116 aa1.97□□□□□ -2.09
SMC4-223ENST00000493695 APCSP02743 223 aa1.97□□□□□ -2.09
SMC4-223ENST00000493695 CD74P04233 296 aa1.97□□□□□ -2.09
SMC4-223ENST00000493695 CD3GP09693 182 aa1.97□□□□□ -2.09
SMC4-223ENST00000493695 UBTFL6P0CB48 400 aaPredicted RBP1.97□□□□□ -2.09
SMC4-223ENST00000493695 RAB3AP20336 220 aa1.97□□□□□ -2.09
SMC4-223ENST00000493695 CEACAM3P40198 252 aa1.97□□□□□ -2.09
SMC4-223ENST00000493695 STXBP1P61764 594 aaKnown RBP1.97□□□□□ -2.09
SMC4-223ENST00000493695 SP4Q02446 784 aa1.97□□□□□ -2.09
SMC4-223ENST00000493695 TGM3Q08188 693 aa1.97□□□□□ -2.09
SMC4-223ENST00000493695 ALKBH6Q3KRA9 238 aa1.97□□□□□ -2.09
SMC4-223ENST00000493695 KRTAP13-2Q52LG2 175 aa1.97□□□□□ -2.09
SMC4-223ENST00000493695 ORMDL2Q53FV1 153 aa1.97□□□□□ -2.09
SMC4-223ENST00000493695 PPM1LQ5SGD2 360 aa1.97□□□□□ -2.09
SMC4-223ENST00000493695 TMEM220Q6QAJ8 160 aa1.97□□□□□ -2.09
SMC4-223ENST00000493695 BBS5Q8N3I7 341 aa1.97□□□□□ -2.09
SMC4-223ENST00000493695 ZNF709Q8N972 641 aa1.97□□□□□ -2.09
SMC4-223ENST00000493695 OR6N1Q8NGY5 312 aa1.97□□□□□ -2.09
SMC4-223ENST00000493695 NUBPLQ8TB37 319 aa1.97□□□□□ -2.09
SMC4-223ENST00000493695 PIFOQ8TCI5 191 aa1.97□□□□□ -2.09
SMC4-223ENST00000493695 TSEN15Q8WW01 171 aaKnown RBP1.97□□□□□ -2.09
SMC4-223ENST00000493695 NEURL3Q96EH8 262 aa1.97□□□□□ -2.09
SMC4-223ENST00000493695 CAMK2N2Q96S95 79 aa1.97□□□□□ -2.09
SMC4-223ENST00000493695 CHP1Q99653 195 aa1.97□□□□□ -2.09
SMC4-223ENST00000493695 C20orf24Q9BUV8 137 aa1.97□□□□□ -2.09
SMC4-223ENST00000493695 SPNS1Q9H2V7 528 aa1.97□□□□□ -2.09
SMC4-223ENST00000493695 ZNF160Q9HCG1 818 aa1.97□□□□□ -2.09
SMC4-223ENST00000493695 CTSFQ9UBX1 484 aa1.97□□□□□ -2.09
SMC4-223ENST00000493695 TSSC4Q9Y5U2 329 aaPredicted RBP1.97□□□□□ -2.09
SMC4-223ENST00000493695 NINLQ9Y2I6 1382 aa1.97□□□□□ -2.09
SMC4-223ENST00000493695 CABIN1Q9Y6J0 2220 aa1.97□□□□□ -2.09
SMC4-223ENST00000493695 TUBGCP6Q96RT7 1819 aa1.96□□□□□ -2.1
SMC4-223ENST00000493695 IGHV1OR15-9A0A0B4J2B8 117 aa1.96□□□□□ -2.1
SMC4-223ENST00000493695 NCBP2LA6PVI3 153 aaKnown RBP1.96□□□□□ -2.1
SMC4-223ENST00000493695 RAD51BO15315 384 aa1.96□□□□□ -2.1
SMC4-223ENST00000493695 EIF3HO15372 352 aaKnown RBP eCLIP1.96□□□□□ -2.1
SMC4-223ENST00000493695 MPZL1O95297 269 aa1.96□□□□□ -2.1
SMC4-223ENST00000493695 ADRA2AP08913 450 aa1.96□□□□□ -2.1
SMC4-223ENST00000493695 SSTR5P35346 364 aa1.96□□□□□ -2.1
SMC4-223ENST00000493695 MRPL19P49406 292 aaKnown RBP1.96□□□□□ -2.1
SMC4-223ENST00000493695 C21orf59P57076 290 aa1.96□□□□□ -2.1
SMC4-223ENST00000493695 RPS15P62841 145 aaKnown RBP1.96□□□□□ -2.1
SMC4-223ENST00000493695 SEMG2Q02383 582 aa1.96□□□□□ -2.1
SMC4-223ENST00000493695 LIPEQ05469 1076 aa1.96□□□□□ -2.1
SMC4-223ENST00000493695 RCAN2Q14206 197 aa1.96□□□□□ -2.1
SMC4-223ENST00000493695 HSP90AB3PQ58FF7 597 aa1.96□□□□□ -2.1
SMC4-223ENST00000493695 FAM78AQ5JUQ0 283 aa1.96□□□□□ -2.1
SMC4-223ENST00000493695 SPANXN2Q5MJ10 180 aa1.96□□□□□ -2.1
SMC4-223ENST00000493695 PRMT9Q6P2P2 845 aa1.96□□□□□ -2.1
SMC4-223ENST00000493695 ZNF880Q6PDB4 577 aa1.96□□□□□ -2.1
SMC4-223ENST00000493695 SHISA6Q6ZSJ9 500 aa1.96□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms