RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 ZNF45Q02386 682 aa12.52□□□□□ -0.4
CUX1-209ENST00000487284 KRTCAP3Q53RY4 240 aa12.52□□□□□ -0.4
CUX1-209ENST00000487284 WDR38Q5JTN6 314 aa12.52□□□□□ -0.4
CUX1-209ENST00000487284 OR7E24Q6IFN5 339 aa12.52□□□□□ -0.4
CUX1-209ENST00000487284 CORO6Q6QEF8 472 aa12.52□□□□□ -0.4
CUX1-209ENST00000487284 PLXDC2Q6UX71 529 aa12.52□□□□□ -0.4
CUX1-209ENST00000487284 BTLAQ7Z6A9 289 aa12.52□□□□□ -0.4
CUX1-209ENST00000487284 NR2C2APQ86WQ0 139 aa12.52□□□□□ -0.4
CUX1-209ENST00000487284 COMMD4Q9H0A8 199 aa12.52□□□□□ -0.4
CUX1-209ENST00000487284 SEC61A2Q9H9S3 476 aa12.52□□□□□ -0.4
CUX1-209ENST00000487284 EMC7Q9NPA0 242 aa12.52□□□□□ -0.4
CUX1-209ENST00000487284 PAQR5Q9NXK6 330 aaPredicted RBP12.52□□□□□ -0.4
CUX1-209ENST00000487284 ZGRF1Q86YA3 2104 aa12.52□□□□□ -0.4
CUX1-209ENST00000487284 ARPC4-TTLL3A0A0A6YYG9 625 aa12.52□□□□□ -0.41
CUX1-209ENST00000487284 OR14I1A6ND48 311 aa12.52□□□□□ -0.41
CUX1-209ENST00000487284 ZNF879B4DU55 563 aa12.52□□□□□ -0.41
CUX1-209ENST00000487284 PNPP00491 289 aa12.52□□□□□ -0.41
CUX1-209ENST00000487284 CDAP32320 146 aa12.52□□□□□ -0.41
CUX1-209ENST00000487284 LSM6P62312 80 aaKnown RBP12.52□□□□□ -0.41
CUX1-209ENST00000487284 Q499Y3 187 aa12.52□□□□□ -0.41
CUX1-209ENST00000487284 ZNF544Q6NX49 715 aa12.52□□□□□ -0.41
CUX1-209ENST00000487284 SPATC1Q76KD6 591 aa12.52□□□□□ -0.41
CUX1-209ENST00000487284 RHOUQ7L0Q8 258 aa12.52□□□□□ -0.41
CUX1-209ENST00000487284 CATSPERDQ86XM0 798 aa12.52□□□□□ -0.41
CUX1-209ENST00000487284 IL17RDQ8NFM7 739 aa12.52□□□□□ -0.41
CUX1-209ENST00000487284 OR10S1Q8NGN2 331 aa12.52□□□□□ -0.41
CUX1-209ENST00000487284 OR5M9Q8NGP3 310 aa12.52□□□□□ -0.41
CUX1-209ENST00000487284 TMEM45BQ96B21 275 aa12.52□□□□□ -0.41
CUX1-209ENST00000487284 SLAMF6Q96DU3 332 aa12.52□□□□□ -0.41
CUX1-209ENST00000487284 DERL3Q96Q80 235 aa12.52□□□□□ -0.41
CUX1-209ENST00000487284 ATF6BQ99941 703 aa12.52□□□□□ -0.41
CUX1-209ENST00000487284 C1orf198Q9H425 327 aa12.52□□□□□ -0.41
CUX1-209ENST00000487284 CMAHPQ9Y471 501 aa12.52□□□□□ -0.41
CUX1-209ENST00000487284 CFAP46Q8IYW2 2715 aa12.51□□□□□ -0.41
CUX1-209ENST00000487284 A0A0G2JK05 382 aa12.51□□□□□ -0.41
CUX1-209ENST00000487284 GPR171O14626 319 aa12.51□□□□□ -0.41
CUX1-209ENST00000487284 PIN1P1O15428 100 aa12.51□□□□□ -0.41
CUX1-209ENST00000487284 DHHO43323 396 aa12.51□□□□□ -0.41
CUX1-209ENST00000487284 SLC43A1O75387 559 aa12.51□□□□□ -0.41
CUX1-209ENST00000487284 NCR1O76036 304 aa12.51□□□□□ -0.41
CUX1-209ENST00000487284 DCTDP32321 178 aa12.51□□□□□ -0.41
CUX1-209ENST00000487284 TNFSF8P32971 234 aa12.51□□□□□ -0.41
CUX1-209ENST00000487284 NTF4P34130 210 aa12.51□□□□□ -0.41
CUX1-209ENST00000487284 PPP5CP53041 499 aa12.51□□□□□ -0.41
CUX1-209ENST00000487284 MFGE8Q08431 387 aaPredicted RBP12.51□□□□□ -0.41
CUX1-209ENST00000487284 HSD17B12Q53GQ0 312 aa12.51□□□□□ -0.41
CUX1-209ENST00000487284 C16orf87Q6PH81 154 aa12.51□□□□□ -0.41
CUX1-209ENST00000487284 CFAP77Q6ZQR2 320 aa12.51□□□□□ -0.41
CUX1-209ENST00000487284 AAED1Q7RTV5 226 aa12.51□□□□□ -0.41
CUX1-209ENST00000487284 LAX1Q8IWV1 398 aa12.51□□□□□ -0.41
CUX1-209ENST00000487284 ZNF676Q8N7Q3 588 aa12.51□□□□□ -0.41
CUX1-209ENST00000487284 ABHD3Q8WU67 409 aa12.51□□□□□ -0.41
CUX1-209ENST00000487284 NABP1Q96AH0 204 aa12.51□□□□□ -0.41
CUX1-209ENST00000487284 ULBP2Q9BZM5 246 aa12.51□□□□□ -0.41
CUX1-209ENST00000487284 MIXL1Q9H2W2 232 aa12.51□□□□□ -0.41
CUX1-209ENST00000487284 GDF2Q9UK05 429 aaPredicted RBP12.51□□□□□ -0.41
CUX1-209ENST00000487284 FBXL3Q9UKT7 428 aa12.51□□□□□ -0.41
CUX1-209ENST00000487284 POLR1DQ9Y2S0 133 aa12.51□□□□□ -0.41
CUX1-209ENST00000487284 R4GMQ9 66 aa12.51□□□□□ -0.41
CUX1-209ENST00000487284 SHANK1Q9Y566 2161 aa12.5□□□□□ -0.41
CUX1-209ENST00000487284 COL6A6A6NMZ7 2263 aa12.5□□□□□ -0.41
CUX1-209ENST00000487284 FREM1Q5H8C1 2179 aa12.5□□□□□ -0.41
CUX1-209ENST00000487284 ACOD1A6NK06 481 aa12.5□□□□□ -0.41
CUX1-209ENST00000487284 RGS5O15539 181 aa12.5□□□□□ -0.41
CUX1-209ENST00000487284 SYNGR4O95473 234 aa12.5□□□□□ -0.41
CUX1-209ENST00000487284 H2BFMP0C1H6 154 aa12.5□□□□□ -0.41
CUX1-209ENST00000487284 MSR1P21757 451 aa12.5□□□□□ -0.41
CUX1-209ENST00000487284 MAPK3P27361 379 aaPredicted RBP12.5□□□□□ -0.41
CUX1-209ENST00000487284 ZNF84P51523 738 aa12.5□□□□□ -0.41
CUX1-209ENST00000487284 SPANXN2Q5MJ10 180 aa12.5□□□□□ -0.41
CUX1-209ENST00000487284 DDI2Q5TDH0 399 aa12.5□□□□□ -0.41
CUX1-209ENST00000487284 CHMP1BQ7LBR1 199 aa12.5□□□□□ -0.41
CUX1-209ENST00000487284 OR2AJ1Q8NGZ0 328 aa12.5□□□□□ -0.41
CUX1-209ENST00000487284 FNDC9Q8TBE3 224 aa12.5□□□□□ -0.41
CUX1-209ENST00000487284 GPR148Q8TDV2 347 aa12.5□□□□□ -0.41
CUX1-209ENST00000487284 ACOT12Q8WYK0 555 aa12.5□□□□□ -0.41
CUX1-209ENST00000487284 THRSPQ92748 146 aa12.5□□□□□ -0.41
CUX1-209ENST00000487284 KCTD12Q96CX2 325 aaKnown RBP12.5□□□□□ -0.41
CUX1-209ENST00000487284 CEP19Q96LK0 163 aa12.5□□□□□ -0.41
CUX1-209ENST00000487284 SLC30A2Q9BRI3 323 aa12.5□□□□□ -0.41
CUX1-209ENST00000487284 NELFAQ9H3P2 528 aa12.5□□□□□ -0.41
CUX1-209ENST00000487284 NOX4Q9NPH5 578 aa12.5□□□□□ -0.41
CUX1-209ENST00000487284 ASH2LQ9UBL3 628 aa12.5□□□□□ -0.41
CUX1-209ENST00000487284 MCTS1Q9ULC4 181 aaKnown RBP12.5□□□□□ -0.41
CUX1-209ENST00000487284 MED12LQ86YW9 2145 aa12.5□□□□□ -0.41
CUX1-209ENST00000487284 TRBV5-7A0A0A0MS05 114 aa12.49□□□□□ -0.41
CUX1-209ENST00000487284 ZNF878C9JN71 531 aa12.49□□□□□ -0.41
CUX1-209ENST00000487284 LOC110117498-PIK3R3F6TDL0 507 aa12.49□□□□□ -0.41
CUX1-209ENST00000487284 TPOP07202 933 aa12.49□□□□□ -0.41
CUX1-209ENST00000487284 RAB3BP20337 219 aa12.49□□□□□ -0.41
CUX1-209ENST00000487284 MRPS34P82930 218 aaKnown RBP12.49□□□□□ -0.41
CUX1-209ENST00000487284 ENDOGQ14249 297 aaKnown RBP12.49□□□□□ -0.41
CUX1-209ENST00000487284 RIPPLY2Q5TAB7 128 aa12.49□□□□□ -0.41
CUX1-209ENST00000487284 SFXN4Q6P4A7 337 aa12.49□□□□□ -0.41
CUX1-209ENST00000487284 PARP16Q8N5Y8 322 aa12.49□□□□□ -0.41
CUX1-209ENST00000487284 OR10AC1Q8NH08 325 aa12.49□□□□□ -0.41
CUX1-209ENST00000487284 HTRA1Q92743 480 aa12.49□□□□□ -0.41
CUX1-209ENST00000487284 ZNF775Q96BV0 537 aaPredicted RBP12.49□□□□□ -0.41
CUX1-209ENST00000487284 ZNF416Q9BWM5 594 aa12.49□□□□□ -0.41
CUX1-209ENST00000487284 ZCCHC4Q9H5U6 513 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms