RNA–Protein interactions for RNA: ENST00000484581.6

VPS13A-211, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2 BASIC

Gene VPS13A, Length 1,155 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-211ENST00000484581 UNC93AQ86WB7 457 aa3.21□□□□□ -1.9
VPS13A-211ENST00000484581 RBM45Q8IUH3 476 aaKnown RBP3.21□□□□□ -1.9
VPS13A-211ENST00000484581 SYCE1Q8N0S2 351 aa3.21□□□□□ -1.9
VPS13A-211ENST00000484581 KIF2BQ8N4N8 673 aa3.21□□□□□ -1.9
VPS13A-211ENST00000484581 MREGQ8N565 214 aa3.21□□□□□ -1.9
VPS13A-211ENST00000484581 C20orf203Q8NBC4 194 aa3.21□□□□□ -1.9
VPS13A-211ENST00000484581 NPBQ8NG41 125 aa3.21□□□□□ -1.9
VPS13A-211ENST00000484581 MCOLN3Q8TDD5 553 aa3.21□□□□□ -1.9
VPS13A-211ENST00000484581 SEH1LQ96EE3 360 aa3.21□□□□□ -1.9
VPS13A-211ENST00000484581 LZTS2Q9BRK4 669 aa3.21□□□□□ -1.9
VPS13A-211ENST00000484581 MAP1LC3CQ9BXW4 147 aa3.21□□□□□ -1.9
VPS13A-211ENST00000484581 SYNDIG1Q9H7V2 258 aa3.21□□□□□ -1.9
VPS13A-211ENST00000484581 ABCB10Q9NRK6 738 aa3.21□□□□□ -1.9
VPS13A-211ENST00000484581 TNFRSF19Q9NS68 423 aa3.21□□□□□ -1.9
VPS13A-211ENST00000484581 CHMP5Q9NZZ3 219 aa3.21□□□□□ -1.9
VPS13A-211ENST00000484581 AQRO60306 1485 aaKnown RBP eCLIP3.21□□□□□ -1.9
VPS13A-211ENST00000484581 AK9Q5TCS8 1911 aa3.21□□□□□ -1.9
VPS13A-211ENST00000484581 CENPJQ9HC77 1338 aaPredicted RBP3.2□□□□□ -1.9
VPS13A-211ENST00000484581 E7ENQ6 273 aa3.2□□□□□ -1.9
VPS13A-211ENST00000484581 E7EWF7 191 aa3.2□□□□□ -1.9
VPS13A-211ENST00000484581 TNFSF13O75888 250 aa3.2□□□□□ -1.9
VPS13A-211ENST00000484581 VAPBO95292 243 aa3.2□□□□□ -1.9
VPS13A-211ENST00000484581 PLEKHA8P1O95397 391 aa3.2□□□□□ -1.9
VPS13A-211ENST00000484581 RAB3DO95716 219 aa3.2□□□□□ -1.9
VPS13A-211ENST00000484581 MOSP00540 346 aa3.2□□□□□ -1.9
VPS13A-211ENST00000484581 BGLAPP02818 100 aa3.2□□□□□ -1.9
VPS13A-211ENST00000484581 CATP04040 527 aaKnown RBP3.2□□□□□ -1.9
VPS13A-211ENST00000484581 OR5H8P0DN80 308 aa3.2□□□□□ -1.9
VPS13A-211ENST00000484581 ATF6P18850 670 aa3.2□□□□□ -1.9
VPS13A-211ENST00000484581 MAS1LP35410 378 aa3.2□□□□□ -1.9
VPS13A-211ENST00000484581 CSNK1DP48730 415 aa3.2□□□□□ -1.9
VPS13A-211ENST00000484581 SERPINB8P50452 374 aa3.2□□□□□ -1.9
VPS13A-211ENST00000484581 FABP6P51161 128 aa3.2□□□□□ -1.9
VPS13A-211ENST00000484581 NCBP2P52298 156 aaKnown RBP eCLIP3.2□□□□□ -1.9
VPS13A-211ENST00000484581 ATP5J2P56134 94 aa3.2□□□□□ -1.9
VPS13A-211ENST00000484581 NUP107P57740 925 aa3.2□□□□□ -1.9
VPS13A-211ENST00000484581 PON3Q15166 354 aa3.2□□□□□ -1.9
VPS13A-211ENST00000484581 GUCA2BQ16661 112 aa3.2□□□□□ -1.9
VPS13A-211ENST00000484581 FRMPD2BQ6IN97 320 aa3.2□□□□□ -1.9
VPS13A-211ENST00000484581 RWDD4Q6NW29 188 aaKnown RBP3.2□□□□□ -1.9
VPS13A-211ENST00000484581 DEGS2Q6QHC5 323 aa3.2□□□□□ -1.9
VPS13A-211ENST00000484581 ACP7Q6ZNF0 438 aa3.2□□□□□ -1.9
VPS13A-211ENST00000484581 Q6ZR54 194 aa3.2□□□□□ -1.9
VPS13A-211ENST00000484581 LINC00173Q6ZV60 143 aa3.2□□□□□ -1.9
VPS13A-211ENST00000484581 SNX20Q7Z614 316 aa3.2□□□□□ -1.9
VPS13A-211ENST00000484581 DUSP18Q8NEJ0 188 aa3.2□□□□□ -1.9
VPS13A-211ENST00000484581 CCDC54Q8NEL0 328 aa3.2□□□□□ -1.9
VPS13A-211ENST00000484581 OR52E2Q8NGJ4 325 aa3.2□□□□□ -1.9
VPS13A-211ENST00000484581 OR4S2Q8NH73 311 aa3.2□□□□□ -1.9
VPS13A-211ENST00000484581 OR51E1Q8TCB6 317 aa3.2□□□□□ -1.9
VPS13A-211ENST00000484581 BAALCQ8WXS3 180 aa3.2□□□□□ -1.9
VPS13A-211ENST00000484581 TFGQ92734 400 aaPredicted RBP3.2□□□□□ -1.9
VPS13A-211ENST00000484581 GPR21Q99679 349 aa3.2□□□□□ -1.9
VPS13A-211ENST00000484581 KCNS3Q9BQ31 491 aa3.2□□□□□ -1.9
VPS13A-211ENST00000484581 CLMPQ9H6B4 373 aa3.2□□□□□ -1.9
VPS13A-211ENST00000484581 UBE2ZQ9H832 354 aaPredicted RBP3.2□□□□□ -1.9
VPS13A-211ENST00000484581 SLCO1B3Q9NPD5 702 aa3.2□□□□□ -1.9
VPS13A-211ENST00000484581 F11RQ9Y624 299 aaKnown RBP3.2□□□□□ -1.9
VPS13A-211ENST00000484581 GMEB1Q9Y692 573 aa3.2□□□□□ -1.9
VPS13A-211ENST00000484581 GTF3C1Q12789 2109 aa3.2□□□□□ -1.9
VPS13A-211ENST00000484581 TET2Q6N021 2002 aaPredicted RBP3.19□□□□□ -1.9
VPS13A-211ENST00000484581 GJE1A6NN92 205 aa3.19□□□□□ -1.9
VPS13A-211ENST00000484581 GABRPO00591 440 aa3.19□□□□□ -1.9
VPS13A-211ENST00000484581 NME4O00746 187 aa3.19□□□□□ -1.9
VPS13A-211ENST00000484581 RFXANKO14593 260 aa3.19□□□□□ -1.9
VPS13A-211ENST00000484581 PHOX2AO14813 284 aa3.19□□□□□ -1.9
VPS13A-211ENST00000484581 KLF8O95600 359 aaPredicted RBP3.19□□□□□ -1.9
VPS13A-211ENST00000484581 HOXC4P09017 264 aaPredicted RBP3.19□□□□□ -1.9
VPS13A-211ENST00000484581 CRISP2P16562 243 aa3.19□□□□□ -1.9
VPS13A-211ENST00000484581 ZNF30P17039 623 aa3.19□□□□□ -1.9
VPS13A-211ENST00000484581 RAB3BP20337 219 aa3.19□□□□□ -1.9
VPS13A-211ENST00000484581 RAB5AP20339 215 aa3.19□□□□□ -1.9
VPS13A-211ENST00000484581 BGNP21810 368 aa3.19□□□□□ -1.9
VPS13A-211ENST00000484581 LCN1P31025 176 aa3.19□□□□□ -1.9
VPS13A-211ENST00000484581 SPAM1P38567 509 aa3.19□□□□□ -1.9
VPS13A-211ENST00000484581 CAV2P51636 162 aa3.19□□□□□ -1.9
VPS13A-211ENST00000484581 ZNF121P58317 390 aaPredicted RBP3.19□□□□□ -1.9
VPS13A-211ENST00000484581 TNNC1P63316 161 aa3.19□□□□□ -1.9
VPS13A-211ENST00000484581 PRR3P79522 188 aaKnown RBP3.19□□□□□ -1.9
VPS13A-211ENST00000484581 TCP10Q12799 353 aa3.19□□□□□ -1.9
VPS13A-211ENST00000484581 TFDP2Q14188 446 aa3.19□□□□□ -1.9
VPS13A-211ENST00000484581 GPR176Q14439 515 aa3.19□□□□□ -1.9
VPS13A-211ENST00000484581 HERPUD1Q15011 391 aa3.19□□□□□ -1.9
VPS13A-211ENST00000484581 USF2Q15853 346 aaPredicted RBP3.19□□□□□ -1.9
VPS13A-211ENST00000484581 ZSCAN26Q16670 478 aa3.19□□□□□ -1.9
VPS13A-211ENST00000484581 C18orf21Q32NC0 220 aaPredicted RBP3.19□□□□□ -1.9
VPS13A-211ENST00000484581 TTLL9Q3SXZ7 439 aa3.19□□□□□ -1.9
VPS13A-211ENST00000484581 THEM4Q5T1C6 240 aa3.19□□□□□ -1.9
VPS13A-211ENST00000484581 ZNF774Q6NX45 483 aa3.19□□□□□ -1.9
VPS13A-211ENST00000484581 ZNF544Q6NX49 715 aa3.19□□□□□ -1.9
VPS13A-211ENST00000484581 ZNF493Q6ZR52 646 aa3.19□□□□□ -1.9
VPS13A-211ENST00000484581 COX15Q7KZN9 410 aa3.19□□□□□ -1.9
VPS13A-211ENST00000484581 ABHD13Q7L211 337 aa3.19□□□□□ -1.9
VPS13A-211ENST00000484581 COPS6Q7L5N1 327 aa3.19□□□□□ -1.9
VPS13A-211ENST00000484581 CAMK2N1Q7Z7J9 78 aa3.19□□□□□ -1.9
VPS13A-211ENST00000484581 TGIF2LYQ8IUE0 185 aa3.19□□□□□ -1.9
VPS13A-211ENST00000484581 IQCF2Q8IXL9 164 aa3.19□□□□□ -1.9
VPS13A-211ENST00000484581 SYS1Q8N2H4 156 aa3.19□□□□□ -1.9
VPS13A-211ENST00000484581 ZFP41Q8N8Y5 198 aa3.19□□□□□ -1.9
VPS13A-211ENST00000484581 NOXO1Q8NFA2 376 aa3.19□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms