RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 CCDC54Q8NEL0 328 aa13.21□□□□□ -0.29
HDAC6-220ENST00000477528 PIGCQ92535 297 aa13.21□□□□□ -0.29
HDAC6-220ENST00000477528 GCDHQ92947 438 aaPredicted RBP13.21□□□□□ -0.29
HDAC6-220ENST00000477528 ARL11Q969Q4 196 aa13.21□□□□□ -0.29
HDAC6-220ENST00000477528 CMSS1Q9BQ75 279 aaKnown RBP13.21□□□□□ -0.29
HDAC6-220ENST00000477528 ASF1BQ9NVP2 202 aa13.21□□□□□ -0.29
HDAC6-220ENST00000477528 TMEM200CA6NKL6 621 aa13.21□□□□□ -0.3
HDAC6-220ENST00000477528 IFI6P09912 130 aa13.21□□□□□ -0.3
HDAC6-220ENST00000477528 SMIM10L1P0DMW3 83 aa13.21□□□□□ -0.3
HDAC6-220ENST00000477528 APLNRP35414 380 aa13.21□□□□□ -0.3
HDAC6-220ENST00000477528 CEBPEQ15744 281 aa13.21□□□□□ -0.3
HDAC6-220ENST00000477528 LPCAT3Q6P1A2 487 aa13.21□□□□□ -0.3
HDAC6-220ENST00000477528 UBALD2Q8IYN6 164 aa13.21□□□□□ -0.3
HDAC6-220ENST00000477528 SMIM10Q96HG1 83 aa13.21□□□□□ -0.3
HDAC6-220ENST00000477528 SEC22AQ96IW7 307 aa13.21□□□□□ -0.3
HDAC6-220ENST00000477528 GLS2Q9UI32 602 aa13.21□□□□□ -0.3
HDAC6-220ENST00000477528 COPS3Q9UNS2 423 aa13.21□□□□□ -0.3
HDAC6-220ENST00000477528 SLC22A23A1A5C7 686 aa13.2□□□□□ -0.3
HDAC6-220ENST00000477528 RFX2P48378 723 aa13.2□□□□□ -0.3
HDAC6-220ENST00000477528 WDR38Q5JTN6 314 aa13.2□□□□□ -0.3
HDAC6-220ENST00000477528 GPR119Q8TDV5 335 aa13.2□□□□□ -0.3
HDAC6-220ENST00000477528 ABHD1Q96SE0 405 aa13.2□□□□□ -0.3
HDAC6-220ENST00000477528 NTMQ9P121 344 aa13.2□□□□□ -0.3
HDAC6-220ENST00000477528 WASF3Q9UPY6 502 aa13.2□□□□□ -0.3
HDAC6-220ENST00000477528 LSM5Q9Y4Y9 91 aaKnown RBP13.2□□□□□ -0.3
HDAC6-220ENST00000477528 LRP12Q9Y561 859 aa13.2□□□□□ -0.3
HDAC6-220ENST00000477528 CCDC88CQ9P219 2028 aa13.2□□□□□ -0.3
HDAC6-220ENST00000477528 EFNA3P52797 238 aa13.2□□□□□ -0.3
HDAC6-220ENST00000477528 RAG2P55895 527 aa13.2□□□□□ -0.3
HDAC6-220ENST00000477528 CCL7P80098 99 aa13.2□□□□□ -0.3
HDAC6-220ENST00000477528 SLC22A18ASQ8N1D0 253 aa13.2□□□□□ -0.3
HDAC6-220ENST00000477528 RNF128Q8TEB7 428 aa13.2□□□□□ -0.3
HDAC6-220ENST00000477528 UPRTQ96BW1 309 aa13.2□□□□□ -0.3
HDAC6-220ENST00000477528 PBOV1Q9GZY1 135 aa13.2□□□□□ -0.3
HDAC6-220ENST00000477528 ZCCHC4Q9H5U6 513 aa13.2□□□□□ -0.3
HDAC6-220ENST00000477528 FANCFQ9NPI8 374 aa13.2□□□□□ -0.3
HDAC6-220ENST00000477528 TAS2R5Q9NYW4 299 aa13.2□□□□□ -0.3
HDAC6-220ENST00000477528 HDGFL3Q9Y3E1 203 aa13.2□□□□□ -0.3
HDAC6-220ENST00000477528 H7C2Y5 167 aa13.2□□□□□ -0.3
HDAC6-220ENST00000477528 M0R036 132 aa13.2□□□□□ -0.3
HDAC6-220ENST00000477528 TCN2P20062 427 aa13.2□□□□□ -0.3
HDAC6-220ENST00000477528 SLC37A1P57057 533 aa13.2□□□□□ -0.3
HDAC6-220ENST00000477528 SPACA9Q96E40 222 aaPredicted RBP13.2□□□□□ -0.3
HDAC6-220ENST00000477528 RNF170Q96K19 258 aa13.2□□□□□ -0.3
HDAC6-220ENST00000477528 CKAP5Q14008 2032 aa13.2□□□□□ -0.3
HDAC6-220ENST00000477528 A0A0A6YYH2 397 aa13.2□□□□□ -0.3
HDAC6-220ENST00000477528 TMEM235A6NFC5 223 aa13.2□□□□□ -0.3
HDAC6-220ENST00000477528 A6NJ64 397 aa13.2□□□□□ -0.3
HDAC6-220ENST00000477528 COL13A1Q5TAT6 717 aaPredicted RBP13.2□□□□□ -0.3
HDAC6-220ENST00000477528 ZNF585AQ6P3V2 769 aa13.2□□□□□ -0.3
HDAC6-220ENST00000477528 SLC51BQ86UW2 128 aa13.2□□□□□ -0.3
HDAC6-220ENST00000477528 FJX1Q86VR8 437 aa13.2□□□□□ -0.3
HDAC6-220ENST00000477528 ESX1Q8N693 406 aa13.2□□□□□ -0.3
HDAC6-220ENST00000477528 ZSCAN4Q8NAM6 433 aaPredicted RBP13.2□□□□□ -0.3
HDAC6-220ENST00000477528 ZNF223Q9UK11 482 aaPredicted RBP13.2□□□□□ -0.3
HDAC6-220ENST00000477528 A0A1W2PQD3 144 aa13.19□□□□□ -0.3
HDAC6-220ENST00000477528 SCAND1P57086 179 aa13.19□□□□□ -0.3
HDAC6-220ENST00000477528 HSD17B8Q92506 261 aa13.19□□□□□ -0.3
HDAC6-220ENST00000477528 UTP23Q9BRU9 249 aaKnown RBP13.19□□□□□ -0.3
HDAC6-220ENST00000477528 DTX4Q9Y2E6 619 aa13.19□□□□□ -0.3
HDAC6-220ENST00000477528 A0A087WZY1 265 aa13.19□□□□□ -0.3
HDAC6-220ENST00000477528 PMP2P02689 132 aa13.19□□□□□ -0.3
HDAC6-220ENST00000477528 BEX5Q5H9J7 111 aa13.19□□□□□ -0.3
HDAC6-220ENST00000477528 EXOSC6Q5RKV6 272 aaKnown RBP13.19□□□□□ -0.3
HDAC6-220ENST00000477528 TMEM185AQ8NFB2 350 aa13.19□□□□□ -0.3
HDAC6-220ENST00000477528 ZC3HAV1LQ96H79 300 aaKnown RBP13.19□□□□□ -0.3
HDAC6-220ENST00000477528 SPIN2AQ99865 258 aa13.19□□□□□ -0.3
HDAC6-220ENST00000477528 SPIN2BQ9BPZ2 258 aa13.19□□□□□ -0.3
HDAC6-220ENST00000477528 CDH20Q9HBT6 801 aa13.19□□□□□ -0.3
HDAC6-220ENST00000477528 ACKR4Q9NPB9 350 aa13.19□□□□□ -0.3
HDAC6-220ENST00000477528 KCNS2Q9ULS6 477 aa13.19□□□□□ -0.3
HDAC6-220ENST00000477528 B3GALT1Q9Y5Z6 326 aa13.19□□□□□ -0.3
HDAC6-220ENST00000477528 ANKRD30BLA7E2S9 258 aa13.19□□□□□ -0.3
HDAC6-220ENST00000477528 AKR7A2O43488 359 aa13.19□□□□□ -0.3
HDAC6-220ENST00000477528 CD3DP04234 171 aa13.19□□□□□ -0.3
HDAC6-220ENST00000477528 HOXB5P09067 269 aa13.19□□□□□ -0.3
HDAC6-220ENST00000477528 CYB561P49447 251 aa13.19□□□□□ -0.3
HDAC6-220ENST00000477528 SKP2Q13309 424 aa13.19□□□□□ -0.3
HDAC6-220ENST00000477528 DGAT2L6Q6ZPD8 337 aa13.19□□□□□ -0.3
HDAC6-220ENST00000477528 PTPMT1Q8WUK0 201 aaPredicted RBP13.19□□□□□ -0.3
HDAC6-220ENST00000477528 POM121CA8CG34 1229 aa13.19□□□□□ -0.3
HDAC6-220ENST00000477528 GLSO94925 669 aaPredicted RBP13.19□□□□□ -0.3
HDAC6-220ENST00000477528 ALOX5APP20292 161 aa13.19□□□□□ -0.3
HDAC6-220ENST00000477528 SEC61A1P61619 476 aaKnown RBP13.19□□□□□ -0.3
HDAC6-220ENST00000477528 PCNPQ8WW12 178 aaKnown RBP13.19□□□□□ -0.3
HDAC6-220ENST00000477528 NICN1Q9BSH3 213 aa13.19□□□□□ -0.3
HDAC6-220ENST00000477528 GSX2Q9BZM3 304 aa13.19□□□□□ -0.3
HDAC6-220ENST00000477528 ANKRD10Q9NXR5 420 aa13.19□□□□□ -0.3
HDAC6-220ENST00000477528 OR5V1Q9UGF6 321 aa13.19□□□□□ -0.3
HDAC6-220ENST00000477528 PIGLQ9Y2B2 252 aa13.19□□□□□ -0.3
HDAC6-220ENST00000477528 NOSIPQ9Y314 301 aaKnown RBP13.19□□□□□ -0.3
HDAC6-220ENST00000477528 ZNF705EA8MWA4 302 aaPredicted RBP13.18□□□□□ -0.3
HDAC6-220ENST00000477528 SLC6A1P30531 599 aa13.18□□□□□ -0.3
HDAC6-220ENST00000477528 LINC00303Q3SY05 128 aa13.18□□□□□ -0.3
HDAC6-220ENST00000477528 ZNF684Q5T5D7 378 aa13.18□□□□□ -0.3
HDAC6-220ENST00000477528 OR4C16Q8NGL9 310 aa13.18□□□□□ -0.3
HDAC6-220ENST00000477528 ST6GAL2Q96JF0 529 aa13.18□□□□□ -0.3
HDAC6-220ENST00000477528 ZNF286AQ9HBT8 521 aa13.18□□□□□ -0.3
HDAC6-220ENST00000477528 GPR84Q9NQS5 396 aa13.18□□□□□ -0.3
HDAC6-220ENST00000477528 SLC17A5Q9NRA2 495 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms