RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 NABP1Q96AH0 204 aa5.82□□□□□ -1.48
CCDC88A-213ENST00000476903 NMD3Q96D46 503 aaKnown RBP5.82□□□□□ -1.48
CCDC88A-213ENST00000476903 C1orf159Q96HA4 380 aa5.82□□□□□ -1.48
CCDC88A-213ENST00000476903 TSPAN32Q96QS1 320 aa5.82□□□□□ -1.48
CCDC88A-213ENST00000476903 RBP7Q96R05 134 aa5.82□□□□□ -1.48
CCDC88A-213ENST00000476903 BEX2Q9BXY8 128 aa5.82□□□□□ -1.48
CCDC88A-213ENST00000476903 BCL2L14Q9BZR8 327 aa5.82□□□□□ -1.48
CCDC88A-213ENST00000476903 FAM107BQ9H098 131 aa5.82□□□□□ -1.48
CCDC88A-213ENST00000476903 SHARPINQ9H0F6 387 aa5.82□□□□□ -1.48
CCDC88A-213ENST00000476903 MYLK2Q9H1R3 596 aa5.82□□□□□ -1.48
CCDC88A-213ENST00000476903 ANKRD19PQ9H560 264 aa5.82□□□□□ -1.48
CCDC88A-213ENST00000476903 MYEF2Q9P2K5 600 aaKnown RBP5.82□□□□□ -1.48
CCDC88A-213ENST00000476903 ZNF346Q9UL40 294 aaKnown RBP5.82□□□□□ -1.48
CCDC88A-213ENST00000476903 KCNS2Q9ULS6 477 aa5.82□□□□□ -1.48
CCDC88A-213ENST00000476903 TMEM5Q9Y2B1 443 aa5.82□□□□□ -1.48
CCDC88A-213ENST00000476903 FAM32AQ9Y421 112 aaKnown RBP5.82□□□□□ -1.48
CCDC88A-213ENST00000476903 UGT2A1Q9Y4X1 527 aa5.82□□□□□ -1.48
CCDC88A-213ENST00000476903 SNX13Q9Y5W8 968 aa5.82□□□□□ -1.48
CCDC88A-213ENST00000476903 ANK3Q12955 4377 aaKnown RBP5.82□□□□□ -1.48
CCDC88A-213ENST00000476903 TANC2Q9HCD6 1990 aa5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 A0A087WUU8 490 aa5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 IGKV1D-43A0A0B4J1Z2 117 aa5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 A0A1W2PRQ8 180 aa5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 LRP5LA4QPB2 252 aa5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 XKRYO14609 159 aa5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 SNX3O60493 162 aa5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 PRSS23O95084 383 aa5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 MT-ND5P03915 603 aa5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 LCKP06239 509 aa5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 H1F0P07305 194 aaKnown RBP5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 HNRNPCP07910 306 aaKnown RBP eCLIP5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 ADH4P08319 380 aa5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 CST2P09228 141 aa5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 TACSTD2P09758 323 aa5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 NAT2P11245 290 aa5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 ZNF250P15622 560 aa5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 NCK1P16333 377 aa5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 FAHP16930 419 aa5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 ZNF32P17041 273 aa5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 TCN1P20061 433 aaPredicted RBP5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 HNF1AP20823 631 aa5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 CCNOP22674 350 aa5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 STOMP27105 288 aa5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 APEX1P27695 318 aaKnown RBP5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 RPL4P36578 427 aaKnown RBP5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 GPR4P46093 362 aa5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 SEC24CP53992 1094 aa5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 UCP2P55851 309 aa5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 PCBD1P61457 104 aa5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 MRPS11P82912 194 aaKnown RBP5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 FHL1Q13642 323 aa5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 RIN1Q13671 783 aa5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 DGCR6Q14129 220 aa5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 MAD2L1BPQ15013 274 aaPredicted RBP5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 SGCAQ16586 387 aa5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 MOGQ16653 247 aa5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 ZBED5Q49AG3 693 aa5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 PABPC1L2AQ5JQF8 200 aa5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 FAM27BQ5VT28 67 aa5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 SLC25A47Q6Q0C1 308 aa5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 TBPL2Q6SJ96 375 aa5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 UGT2A3Q6UWM9 527 aa5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 TMPRSS11FQ6ZWK6 438 aa5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 CPLX4Q7Z7G2 160 aa5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 LRP11Q86VZ4 500 aa5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 MEX3DQ86XN8 651 aaKnown RBP5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 PAQR4Q8N4S7 273 aaPredicted RBP5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 FAM156AQ8NDB6 213 aa5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 ICA1LQ8NDH6 482 aa5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 CPEB3Q8NE35 698 aaKnown RBP5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 SYNPRQ8TBG9 265 aa5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 SNX33Q8WV41 574 aa5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 RDH5Q92781 318 aa5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 MSI2Q96DH6 328 aaKnown RBP5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 SNX18Q96RF0 628 aa5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 OR51B6Q9H340 312 aa5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 CHODLQ9H9P2 273 aa5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 NMNAT1Q9HAN9 279 aaPredicted RBP5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 KRCC1Q9NPI7 259 aaPredicted RBP5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 HINT3Q9NQE9 182 aaKnown RBP5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 SLCO1C1Q9NYB5 712 aa5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 ADA2Q9NZK5 511 aa5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 TAAR3PQ9P1P4 343 aa5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 EIF3KQ9UBQ5 218 aaKnown RBP5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 GRHPRQ9UBQ7 328 aa5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 SAMD4AQ9UPU9 718 aaKnown RBP5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 ENPP4Q9Y6X5 453 aa5.81□□□□□ -1.48
CCDC88A-213ENST00000476903 FBN1P35555 2871 aaKnown RBP5.8□□□□□ -1.48
CCDC88A-213ENST00000476903 IGLV3-9A0A075B6K5 115 aa5.8□□□□□ -1.48
CCDC88A-213ENST00000476903 A0A1W2PPL8 197 aa5.8□□□□□ -1.48
CCDC88A-213ENST00000476903 C5orf49A4QMS7 147 aa5.8□□□□□ -1.48
CCDC88A-213ENST00000476903 C12orf71A8MTZ7 269 aa5.8□□□□□ -1.48
CCDC88A-213ENST00000476903 C17orf100A8MU93 164 aa5.8□□□□□ -1.48
CCDC88A-213ENST00000476903 LYNX1G3V0Z9 82 aa5.8□□□□□ -1.48
CCDC88A-213ENST00000476903 CDC42EP2O14613 210 aa5.8□□□□□ -1.48
CCDC88A-213ENST00000476903 AHCYL1O43865 530 aa5.8□□□□□ -1.48
CCDC88A-213ENST00000476903 CLPTM1O96005 669 aa5.8□□□□□ -1.48
CCDC88A-213ENST00000476903 TGFAP01135 160 aa5.8□□□□□ -1.48
CCDC88A-213ENST00000476903 CD14P08571 375 aa5.8□□□□□ -1.48
CCDC88A-213ENST00000476903 LYNX1P0DP58 116 aa5.8□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms