RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 LRRC37BQ96QE4 947 aa13.35□□□□□ -0.27
CCDC88B-205ENST00000472524 EGLN1Q9GZT9 426 aa13.35□□□□□ -0.27
CCDC88B-205ENST00000472524 NUAK2Q9H093 628 aa13.35□□□□□ -0.27
CCDC88B-205ENST00000472524 ZNF665Q9H7R5 613 aa13.35□□□□□ -0.27
CCDC88B-205ENST00000472524 MSL2Q9HCI7 577 aa13.35□□□□□ -0.27
CCDC88B-205ENST00000472524 CYSLTR2Q9NS75 346 aa13.35□□□□□ -0.27
CCDC88B-205ENST00000472524 CD300AQ9UGN4 299 aa13.35□□□□□ -0.27
CCDC88B-205ENST00000472524 WIPI2Q9Y4P8 454 aa13.35□□□□□ -0.27
CCDC88B-205ENST00000472524 DOCK11Q5JSL3 2073 aa13.35□□□□□ -0.27
CCDC88B-205ENST00000472524 TCF21O43680 179 aa13.34□□□□□ -0.27
CCDC88B-205ENST00000472524 OR10H3O60404 316 aa13.34□□□□□ -0.27
CCDC88B-205ENST00000472524 DCTN3O75935 186 aa13.34□□□□□ -0.27
CCDC88B-205ENST00000472524 TXNDC12O95881 172 aa13.34□□□□□ -0.27
CCDC88B-205ENST00000472524 FABP3P05413 133 aa13.34□□□□□ -0.27
CCDC88B-205ENST00000472524 GSTM3P21266 225 aa13.34□□□□□ -0.27
CCDC88B-205ENST00000472524 RRM2P31350 389 aa13.34□□□□□ -0.27
CCDC88B-205ENST00000472524 LIPAP38571 399 aa13.34□□□□□ -0.27
CCDC88B-205ENST00000472524 LSM6P62312 80 aaKnown RBP13.34□□□□□ -0.27
CCDC88B-205ENST00000472524 PSG7Q13046 419 aa13.34□□□□□ -0.27
CCDC88B-205ENST00000472524 SPRNQ5BIV9 151 aa13.34□□□□□ -0.27
CCDC88B-205ENST00000472524 ZMAT1Q5H9K5 638 aa13.34□□□□□ -0.27
CCDC88B-205ENST00000472524 MTX3Q5HYI7 312 aa13.34□□□□□ -0.27
CCDC88B-205ENST00000472524 C16orf89Q6UX73 402 aa13.34□□□□□ -0.27
CCDC88B-205ENST00000472524 ZER1Q7Z7L7 766 aa13.34□□□□□ -0.27
CCDC88B-205ENST00000472524 JAZF1Q86VZ6 243 aa13.34□□□□□ -0.27
CCDC88B-205ENST00000472524 RFLNBQ8N5W9 214 aa13.34□□□□□ -0.27
CCDC88B-205ENST00000472524 TIMD4Q96H15 378 aa13.34□□□□□ -0.27
CCDC88B-205ENST00000472524 OR52D1Q9H346 318 aa13.34□□□□□ -0.27
CCDC88B-205ENST00000472524 TBCCD1Q9NVR7 557 aa13.34□□□□□ -0.27
CCDC88B-205ENST00000472524 CGGBP1Q9UFW8 167 aaPredicted RBP13.34□□□□□ -0.27
CCDC88B-205ENST00000472524 ISPDA4D126 451 aa13.33□□□□□ -0.28
CCDC88B-205ENST00000472524 RER1O15258 196 aa13.33□□□□□ -0.28
CCDC88B-205ENST00000472524 SLC6A6P31641 620 aa13.33□□□□□ -0.28
CCDC88B-205ENST00000472524 DBPQ10586 325 aaPredicted RBP13.33□□□□□ -0.28
CCDC88B-205ENST00000472524 HNRNPA0Q13151 305 aaKnown RBP13.33□□□□□ -0.28
CCDC88B-205ENST00000472524 MEP1BQ16820 701 aa13.33□□□□□ -0.28
CCDC88B-205ENST00000472524 CCDC92Q53HC0 331 aaPredicted RBP13.33□□□□□ -0.28
CCDC88B-205ENST00000472524 LEG1Q6P5S2 330 aa13.33□□□□□ -0.28
CCDC88B-205ENST00000472524 DNM1P34Q6PK57 102 aa13.33□□□□□ -0.28
CCDC88B-205ENST00000472524 PIGWQ7Z7B1 504 aa13.33□□□□□ -0.28
CCDC88B-205ENST00000472524 ZDHHC21Q8IVQ6 265 aa13.33□□□□□ -0.28
CCDC88B-205ENST00000472524 OR1F12Q8NHA8 337 aa13.33□□□□□ -0.28
CCDC88B-205ENST00000472524 RAB1CQ92928 201 aa13.33□□□□□ -0.28
CCDC88B-205ENST00000472524 RAB39BQ96DA2 213 aa13.33□□□□□ -0.28
CCDC88B-205ENST00000472524 PURGQ9UJV8 347 aaKnown RBP13.33□□□□□ -0.28
CCDC88B-205ENST00000472524 ZDHHC8Q9ULC8 765 aa13.33□□□□□ -0.28
CCDC88B-205ENST00000472524 TMCC3Q9ULS5 477 aa13.33□□□□□ -0.28
CCDC88B-205ENST00000472524 STARD10Q9Y365 291 aa13.33□□□□□ -0.28
CCDC88B-205ENST00000472524 OR6C6A6NF89 314 aa13.32□□□□□ -0.28
CCDC88B-205ENST00000472524 DCTN6O00399 190 aa13.32□□□□□ -0.28
CCDC88B-205ENST00000472524 UBOX5O94941 541 aa13.32□□□□□ -0.28
CCDC88B-205ENST00000472524 RENP00797 406 aa13.32□□□□□ -0.28
CCDC88B-205ENST00000472524 IGHV2-5P01817 119 aa13.32□□□□□ -0.28
CCDC88B-205ENST00000472524 ADH4P08319 380 aa13.32□□□□□ -0.28
CCDC88B-205ENST00000472524 DBHP09172 617 aa13.32□□□□□ -0.28
CCDC88B-205ENST00000472524 FPR3P25089 353 aa13.32□□□□□ -0.28
CCDC88B-205ENST00000472524 CRABP1P29762 137 aa13.32□□□□□ -0.28
CCDC88B-205ENST00000472524 TNFAIP6P98066 277 aaPredicted RBP13.32□□□□□ -0.28
CCDC88B-205ENST00000472524 RFX4Q33E94 735 aa13.32□□□□□ -0.28
CCDC88B-205ENST00000472524 ACSM5Q6NUN0 579 aa13.32□□□□□ -0.28
CCDC88B-205ENST00000472524 CORO6Q6QEF8 472 aa13.32□□□□□ -0.28
CCDC88B-205ENST00000472524 CYP2R1Q6VVX0 501 aa13.32□□□□□ -0.28
CCDC88B-205ENST00000472524 OR4K13Q8NH42 304 aa13.32□□□□□ -0.28
CCDC88B-205ENST00000472524 CMBLQ96DG6 245 aa13.32□□□□□ -0.28
CCDC88B-205ENST00000472524 SAMD8Q96LT4 415 aa13.32□□□□□ -0.28
CCDC88B-205ENST00000472524 DIRC2Q96SL1 478 aa13.32□□□□□ -0.28
CCDC88B-205ENST00000472524 NMNAT3Q96T66 252 aa13.32□□□□□ -0.28
CCDC88B-205ENST00000472524 GAL3ST1Q99999 423 aa13.32□□□□□ -0.28
CCDC88B-205ENST00000472524 IFT27Q9BW83 186 aa13.32□□□□□ -0.28
CCDC88B-205ENST00000472524 METTL17Q9H7H0 456 aaPredicted RBP13.32□□□□□ -0.28
CCDC88B-205ENST00000472524 SRA1Q9HD15 236 aaKnown RBP13.32□□□□□ -0.28
CCDC88B-205ENST00000472524 IL1RAPQ9NPH3 570 aa13.32□□□□□ -0.28
CCDC88B-205ENST00000472524 NDE1Q9NXR1 346 aa13.32□□□□□ -0.28
CCDC88B-205ENST00000472524 PTTG3PQ9NZH4 202 aa13.32□□□□□ -0.28
CCDC88B-205ENST00000472524 KLHL21Q9UJP4 597 aa13.32□□□□□ -0.28
CCDC88B-205ENST00000472524 IGLV1-36A0A0B4J1U3 117 aa13.31□□□□□ -0.28
CCDC88B-205ENST00000472524 TRAV20A0A0B4J274 112 aa13.31□□□□□ -0.28
CCDC88B-205ENST00000472524 CD55P08174 381 aa13.31□□□□□ -0.28
CCDC88B-205ENST00000472524 ANPEPP15144 967 aa13.31□□□□□ -0.28
CCDC88B-205ENST00000472524 HIST1H1CP16403 213 aaKnown RBP13.31□□□□□ -0.28
CCDC88B-205ENST00000472524 NOS3P29474 1203 aa13.31□□□□□ -0.28
CCDC88B-205ENST00000472524 RBMXP38159 391 aaKnown RBP13.31□□□□□ -0.28
CCDC88B-205ENST00000472524 IFNGR2P38484 337 aa13.31□□□□□ -0.28
CCDC88B-205ENST00000472524 ERFP50548 548 aa13.31□□□□□ -0.28
CCDC88B-205ENST00000472524 SLC3A1Q07837 685 aa13.31□□□□□ -0.28
CCDC88B-205ENST00000472524 CDK5R2Q13319 367 aa13.31□□□□□ -0.28
CCDC88B-205ENST00000472524 FAHD2BQ6P2I3 314 aaPredicted RBP13.31□□□□□ -0.28
CCDC88B-205ENST00000472524 SHQ1Q6PI26 577 aaKnown RBP13.31□□□□□ -0.28
CCDC88B-205ENST00000472524 OR5AS1Q8N127 324 aa13.31□□□□□ -0.28
CCDC88B-205ENST00000472524 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.31□□□□□ -0.28
CCDC88B-205ENST00000472524 SDR9C7Q8NEX9 313 aa13.31□□□□□ -0.28
CCDC88B-205ENST00000472524 OR2Z1Q8NG97 314 aa13.31□□□□□ -0.28
CCDC88B-205ENST00000472524 GNPDA2Q8TDQ7 276 aa13.31□□□□□ -0.28
CCDC88B-205ENST00000472524 FAHD2AQ96GK7 314 aa13.31□□□□□ -0.28
CCDC88B-205ENST00000472524 FN3KQ9H479 309 aa13.31□□□□□ -0.28
CCDC88B-205ENST00000472524 RPRD1BQ9NQG5 326 aaKnown RBP13.31□□□□□ -0.28
CCDC88B-205ENST00000472524 DCAF16Q9NXF7 216 aa13.31□□□□□ -0.28
CCDC88B-205ENST00000472524 UBAP1Q9NZ09 502 aa13.31□□□□□ -0.28
CCDC88B-205ENST00000472524 B9D1Q9UPM9 204 aa13.31□□□□□ -0.28
CCDC88B-205ENST00000472524 LHFPL6Q9Y693 200 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms