RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 TEX13CA0A0J9YWL9 993 aa13.54□□□□□ -0.24
COL7A1-204ENST00000462475 PRSS37A4D1T9 235 aa13.54□□□□□ -0.24
COL7A1-204ENST00000462475 DNAJC9-AS1A6NH13 148 aa13.54□□□□□ -0.24
COL7A1-204ENST00000462475 A8MXK9 166 aa13.54□□□□□ -0.24
COL7A1-204ENST00000462475 F5H0A9 414 aaPredicted RBP13.54□□□□□ -0.24
COL7A1-204ENST00000462475 IMPA2O14732 288 aa13.54□□□□□ -0.24
COL7A1-204ENST00000462475 ZNF682O95780 498 aa13.54□□□□□ -0.24
COL7A1-204ENST00000462475 CD14P08571 375 aa13.54□□□□□ -0.24
COL7A1-204ENST00000462475 SLC6A9P48067 706 aa13.54□□□□□ -0.24
COL7A1-204ENST00000462475 C1orf94Q6P1W5 598 aa13.54□□□□□ -0.24
COL7A1-204ENST00000462475 MBOAT2Q6ZWT7 520 aa13.54□□□□□ -0.24
COL7A1-204ENST00000462475 DOK3Q7L591 496 aa13.54□□□□□ -0.24
COL7A1-204ENST00000462475 LRRC28Q86X40 367 aaPredicted RBP13.54□□□□□ -0.24
COL7A1-204ENST00000462475 BCL6BQ8N143 479 aaPredicted RBP13.54□□□□□ -0.24
COL7A1-204ENST00000462475 RASD2Q96D21 266 aa13.54□□□□□ -0.24
COL7A1-204ENST00000462475 C1orf147Q96MC9 270 aaPredicted RBP13.54□□□□□ -0.24
COL7A1-204ENST00000462475 ZNF48Q96MX3 618 aaPredicted RBP13.54□□□□□ -0.24
COL7A1-204ENST00000462475 ZNF570Q96NI8 536 aa13.54□□□□□ -0.24
COL7A1-204ENST00000462475 OR2V2Q96R30 315 aa13.54□□□□□ -0.24
COL7A1-204ENST00000462475 WACQ9BTA9 647 aa13.54□□□□□ -0.24
COL7A1-204ENST00000462475 PLEK2Q9NYT0 353 aa13.54□□□□□ -0.24
COL7A1-204ENST00000462475 NUP50Q9UKX7 468 aa13.54□□□□□ -0.24
COL7A1-204ENST00000462475 PPP1R3CQ9UQK1 317 aa13.54□□□□□ -0.24
COL7A1-204ENST00000462475 INSIG2Q9Y5U4 225 aa13.54□□□□□ -0.24
COL7A1-204ENST00000462475 CAPN7Q9Y6W3 813 aa13.54□□□□□ -0.24
COL7A1-204ENST00000462475 XKRYO14609 159 aa13.53□□□□□ -0.24
COL7A1-204ENST00000462475 HKR1P10072 659 aa13.53□□□□□ -0.24
COL7A1-204ENST00000462475 TUBG1P23258 451 aa13.53□□□□□ -0.24
COL7A1-204ENST00000462475 MMP16P51512 607 aa13.53□□□□□ -0.24
COL7A1-204ENST00000462475 AQP6Q13520 282 aa13.53□□□□□ -0.24
COL7A1-204ENST00000462475 ZBED5Q49AG3 693 aa13.53□□□□□ -0.24
COL7A1-204ENST00000462475 IFI44LQ53G44 452 aa13.53□□□□□ -0.24
COL7A1-204ENST00000462475 RBMS3Q6XE24 437 aaKnown RBP13.53□□□□□ -0.24
COL7A1-204ENST00000462475 TMPRSS11FQ6ZWK6 438 aa13.53□□□□□ -0.24
COL7A1-204ENST00000462475 RNF113BQ8IZP6 322 aaKnown RBP13.53□□□□□ -0.24
COL7A1-204ENST00000462475 OR5AS1Q8N127 324 aa13.53□□□□□ -0.24
COL7A1-204ENST00000462475 POU5F2Q8N7G0 328 aa13.53□□□□□ -0.24
COL7A1-204ENST00000462475 HAVCR1Q96D42 359 aa13.53□□□□□ -0.24
COL7A1-204ENST00000462475 HSH2DQ96JZ2 352 aa13.53□□□□□ -0.24
COL7A1-204ENST00000462475 ZNF747Q9BV97 191 aa13.53□□□□□ -0.24
COL7A1-204ENST00000462475 SYT4Q9H2B2 425 aa13.53□□□□□ -0.24
COL7A1-204ENST00000462475 TUBG2Q9NRH3 451 aa13.53□□□□□ -0.24
COL7A1-204ENST00000462475 ARMCX1Q9P291 453 aa13.53□□□□□ -0.24
COL7A1-204ENST00000462475 ASH2LQ9UBL3 628 aa13.53□□□□□ -0.24
COL7A1-204ENST00000462475 IL19Q9UHD0 177 aa13.53□□□□□ -0.24
COL7A1-204ENST00000462475 OR6C6A6NF89 314 aa13.52□□□□□ -0.25
COL7A1-204ENST00000462475 CEACAM18A8MTB9 384 aa13.52□□□□□ -0.25
COL7A1-204ENST00000462475 TMEM178BH3BS89 294 aa13.52□□□□□ -0.25
COL7A1-204ENST00000462475 CXCR6O00574 342 aa13.52□□□□□ -0.25
COL7A1-204ENST00000462475 TMPRSS2O15393 492 aa13.52□□□□□ -0.25
COL7A1-204ENST00000462475 SASH3O75995 380 aa13.52□□□□□ -0.25
COL7A1-204ENST00000462475 DBHP09172 617 aa13.52□□□□□ -0.25
COL7A1-204ENST00000462475 PRTN3P24158 256 aa13.52□□□□□ -0.25
COL7A1-204ENST00000462475 MDH2P40926 338 aaKnown RBP13.52□□□□□ -0.25
COL7A1-204ENST00000462475 GUCY1A3Q02108 690 aa13.52□□□□□ -0.25
COL7A1-204ENST00000462475 LIPEQ05469 1076 aa13.52□□□□□ -0.25
COL7A1-204ENST00000462475 FOXL1Q12952 345 aa13.52□□□□□ -0.25
COL7A1-204ENST00000462475 KRR1Q13601 381 aaKnown RBP13.52□□□□□ -0.25
COL7A1-204ENST00000462475 HLXQ14774 488 aaPredicted RBP13.52□□□□□ -0.25
COL7A1-204ENST00000462475 CCDC92Q53HC0 331 aaPredicted RBP13.52□□□□□ -0.25
COL7A1-204ENST00000462475 CBLL1Q75N03 491 aa13.52□□□□□ -0.25
COL7A1-204ENST00000462475 TSEN54Q7Z6J9 526 aaKnown RBP13.52□□□□□ -0.25
COL7A1-204ENST00000462475 SLC15A3Q8IY34 581 aa13.52□□□□□ -0.25
COL7A1-204ENST00000462475 OR10AD1Q8NGE0 317 aa13.52□□□□□ -0.25
COL7A1-204ENST00000462475 MRI1Q9BV20 369 aa13.52□□□□□ -0.25
COL7A1-204ENST00000462475 RERGLQ9H628 205 aa13.52□□□□□ -0.25
COL7A1-204ENST00000462475 GCM1Q9NP62 436 aa13.52□□□□□ -0.25
COL7A1-204ENST00000462475 PTTG3PQ9NZH4 202 aa13.52□□□□□ -0.25
COL7A1-204ENST00000462475 COA3Q9Y2R0 106 aaPredicted RBP13.52□□□□□ -0.25
COL7A1-204ENST00000462475 RER1O15258 196 aa13.51□□□□□ -0.25
COL7A1-204ENST00000462475 SURF4O15260 269 aa13.51□□□□□ -0.25
COL7A1-204ENST00000462475 KCNAB3O43448 404 aa13.51□□□□□ -0.25
COL7A1-204ENST00000462475 AHCYL1O43865 530 aa13.51□□□□□ -0.25
COL7A1-204ENST00000462475 SLC16A7O60669 478 aa13.51□□□□□ -0.25
COL7A1-204ENST00000462475 ZNF205O95201 554 aa13.51□□□□□ -0.25
COL7A1-204ENST00000462475 ESCO2Q56NI9 601 aa13.51□□□□□ -0.25
COL7A1-204ENST00000462475 PRR31Q5SQ13 230 aa13.51□□□□□ -0.25
COL7A1-204ENST00000462475 ATG16L2Q8NAA4 619 aa13.51□□□□□ -0.25
COL7A1-204ENST00000462475 OR1F12Q8NHA8 337 aa13.51□□□□□ -0.25
COL7A1-204ENST00000462475 ZNF420Q8TAQ5 688 aaPredicted RBP13.51□□□□□ -0.25
COL7A1-204ENST00000462475 FAM46AQ96IP4 442 aaKnown RBP13.51□□□□□ -0.25
COL7A1-204ENST00000462475 COG8Q96MW5 612 aa13.51□□□□□ -0.25
COL7A1-204ENST00000462475 NMNAT1Q9HAN9 279 aaPredicted RBP13.51□□□□□ -0.25
COL7A1-204ENST00000462475 ARGLU1Q9NWB6 273 aaPredicted RBP13.51□□□□□ -0.25
COL7A1-204ENST00000462475 OR5V1Q9UGF6 321 aa13.51□□□□□ -0.25
COL7A1-204ENST00000462475 IL20RAQ9UHF4 553 aa13.51□□□□□ -0.25
COL7A1-204ENST00000462475 CMYA5Q8N3K9 4069 aa13.5□□□□□ -0.25
COL7A1-204ENST00000462475 IGHV3OR16-10A0A075B7F0 116 aa13.5□□□□□ -0.25
COL7A1-204ENST00000462475 NME4O00746 187 aa13.5□□□□□ -0.25
COL7A1-204ENST00000462475 KHDRBS3O75525 346 aaKnown RBP13.5□□□□□ -0.25
COL7A1-204ENST00000462475 GPANK1O95872 356 aa13.5□□□□□ -0.25
COL7A1-204ENST00000462475 SERPINA1P01009 418 aa13.5□□□□□ -0.25
COL7A1-204ENST00000462475 IGHV4-38-2P0DP08 117 aa13.5□□□□□ -0.25
COL7A1-204ENST00000462475 RAC2P15153 192 aa13.5□□□□□ -0.25
COL7A1-204ENST00000462475 H2AFXP16104 143 aaPredicted RBP13.5□□□□□ -0.25
COL7A1-204ENST00000462475 SDHAP31040 664 aa13.5□□□□□ -0.25
COL7A1-204ENST00000462475 CD80P33681 288 aa13.5□□□□□ -0.25
COL7A1-204ENST00000462475 SLC7A2P52569 658 aa13.5□□□□□ -0.25
COL7A1-204ENST00000462475 LSM6P62312 80 aaKnown RBP13.5□□□□□ -0.25
COL7A1-204ENST00000462475 BAMBIQ13145 260 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms