RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 PTPMT1Q8WUK0 201 aaPredicted RBP10.49□□□□□ -0.73
NPHP4-204ENST00000460696 CHAC2Q8WUX2 184 aa10.49□□□□□ -0.73
NPHP4-204ENST00000460696 FOXRED1Q96CU9 486 aaPredicted RBP10.49□□□□□ -0.73
NPHP4-204ENST00000460696 OR8B4Q96RC9 309 aa10.49□□□□□ -0.73
NPHP4-204ENST00000460696 PRRT1Q99946 306 aa10.49□□□□□ -0.73
NPHP4-204ENST00000460696 KCNK15Q9H427 330 aa10.49□□□□□ -0.73
NPHP4-204ENST00000460696 BANF2Q9H503 90 aa10.49□□□□□ -0.73
NPHP4-204ENST00000460696 CHST11Q9NPF2 352 aa10.49□□□□□ -0.73
NPHP4-204ENST00000460696 SLC39A1Q9NY26 324 aa10.49□□□□□ -0.73
NPHP4-204ENST00000460696 PCNX2A6NKB5 2137 aa10.49□□□□□ -0.73
NPHP4-204ENST00000460696 TP53BP1Q12888 1972 aaPredicted RBP10.49□□□□□ -0.73
NPHP4-204ENST00000460696 CXCL3P19876 107 aa10.49□□□□□ -0.73
NPHP4-204ENST00000460696 GABRR1P24046 479 aa10.49□□□□□ -0.73
NPHP4-204ENST00000460696 SLC25A1P53007 311 aa10.49□□□□□ -0.73
NPHP4-204ENST00000460696 CEBPEQ15744 281 aa10.49□□□□□ -0.73
NPHP4-204ENST00000460696 FHL5Q5TD97 284 aa10.49□□□□□ -0.73
NPHP4-204ENST00000460696 OPN5Q6U736 354 aa10.49□□□□□ -0.73
NPHP4-204ENST00000460696 GSG1LQ6UXU4 331 aa10.49□□□□□ -0.73
NPHP4-204ENST00000460696 ADGRE4PQ86SQ3 457 aa10.49□□□□□ -0.73
NPHP4-204ENST00000460696 ZNF680Q8NEM1 530 aa10.49□□□□□ -0.73
NPHP4-204ENST00000460696 SLAMF6Q96DU3 332 aa10.49□□□□□ -0.73
NPHP4-204ENST00000460696 SLC23A1Q9UHI7 598 aa10.49□□□□□ -0.73
NPHP4-204ENST00000460696 FRMPD3Q5JV73 1810 aa10.49□□□□□ -0.73
NPHP4-204ENST00000460696 ZNF318Q5VUA4 2279 aa10.49□□□□□ -0.73
NPHP4-204ENST00000460696 GGT3PA6NGU5 568 aa10.49□□□□□ -0.73
NPHP4-204ENST00000460696 CCSO14618 274 aa10.49□□□□□ -0.73
NPHP4-204ENST00000460696 APOBEC1P41238 236 aaKnown RBP10.49□□□□□ -0.73
NPHP4-204ENST00000460696 GABREP78334 506 aa10.49□□□□□ -0.73
NPHP4-204ENST00000460696 FGL1Q08830 312 aa10.49□□□□□ -0.73
NPHP4-204ENST00000460696 OR4C16Q8NGL9 310 aa10.49□□□□□ -0.73
NPHP4-204ENST00000460696 OR51E1Q8TCB6 317 aa10.49□□□□□ -0.73
NPHP4-204ENST00000460696 C4orf45Q96LM5 186 aa10.49□□□□□ -0.73
NPHP4-204ENST00000460696 PTDSS2Q9BVG9 487 aa10.49□□□□□ -0.73
NPHP4-204ENST00000460696 SH3BGRL2Q9UJC5 107 aa10.49□□□□□ -0.73
NPHP4-204ENST00000460696 ICAM5Q9UMF0 924 aa10.49□□□□□ -0.73
NPHP4-204ENST00000460696 SNRNP200O75643 2136 aaKnown RBP10.48□□□□□ -0.73
NPHP4-204ENST00000460696 C17orf51A8MQB3 221 aa10.48□□□□□ -0.73
NPHP4-204ENST00000460696 DCTN6O00399 190 aa10.48□□□□□ -0.73
NPHP4-204ENST00000460696 TPD52L2O43399 206 aaKnown RBP10.48□□□□□ -0.73
NPHP4-204ENST00000460696 ALOX5APP20292 161 aa10.48□□□□□ -0.73
NPHP4-204ENST00000460696 NANOS3P60323 173 aaKnown RBP10.48□□□□□ -0.73
NPHP4-204ENST00000460696 MESTQ5EB52 335 aa10.48□□□□□ -0.73
NPHP4-204ENST00000460696 ACKR4Q9NPB9 350 aa10.48□□□□□ -0.73
NPHP4-204ENST00000460696 FRRS1LQ9P0K9 344 aa10.48□□□□□ -0.73
NPHP4-204ENST00000460696 MRPS28Q9Y2Q9 187 aaKnown RBP10.48□□□□□ -0.73
NPHP4-204ENST00000460696 INTS1Q8N201 2190 aaKnown RBP10.48□□□□□ -0.73
NPHP4-204ENST00000460696 ALG1L2C9J202 215 aa10.48□□□□□ -0.73
NPHP4-204ENST00000460696 NUDT21O43809 227 aaKnown RBP10.48□□□□□ -0.73
NPHP4-204ENST00000460696 SERPINA5P05154 406 aa10.48□□□□□ -0.73
NPHP4-204ENST00000460696 UBCP0CG48 685 aaKnown RBP10.48□□□□□ -0.73
NPHP4-204ENST00000460696 DLSTP36957 453 aa10.48□□□□□ -0.73
NPHP4-204ENST00000460696 FOLR3P41439 243 aa10.48□□□□□ -0.73
NPHP4-204ENST00000460696 CEBPGP53567 150 aa10.48□□□□□ -0.73
NPHP4-204ENST00000460696 MGAT2Q10469 447 aa10.48□□□□□ -0.73
NPHP4-204ENST00000460696 RSU1Q15404 277 aa10.48□□□□□ -0.73
NPHP4-204ENST00000460696 SLC9A3R2Q15599 337 aa10.48□□□□□ -0.73
NPHP4-204ENST00000460696 C9orf135Q5VTT2 229 aa10.48□□□□□ -0.73
NPHP4-204ENST00000460696 OR51A4Q8NGJ6 313 aa10.48□□□□□ -0.73
NPHP4-204ENST00000460696 CTHRC1Q96CG8 243 aa10.48□□□□□ -0.73
NPHP4-204ENST00000460696 TMEM59Q9BXS4 323 aa10.48□□□□□ -0.73
NPHP4-204ENST00000460696 SLC22A11Q9NSA0 550 aa10.48□□□□□ -0.73
NPHP4-204ENST00000460696 LRP12Q9Y561 859 aa10.48□□□□□ -0.73
NPHP4-204ENST00000460696 SLCO1B1Q9Y6L6 691 aa10.48□□□□□ -0.73
NPHP4-204ENST00000460696 CREBBPQ92793 2442 aa10.48□□□□□ -0.73
NPHP4-204ENST00000460696 PYCARD-AS1I3L0S3 204 aa10.48□□□□□ -0.73
NPHP4-204ENST00000460696 MEF2DQ14814 521 aa10.48□□□□□ -0.73
NPHP4-204ENST00000460696 BCL2A1Q16548 175 aa10.48□□□□□ -0.73
NPHP4-204ENST00000460696 FAM199XQ6PEV8 388 aaPredicted RBP10.48□□□□□ -0.73
NPHP4-204ENST00000460696 RHOUQ7L0Q8 258 aa10.48□□□□□ -0.73
NPHP4-204ENST00000460696 IFI44Q8TCB0 444 aa10.48□□□□□ -0.73
NPHP4-204ENST00000460696 NUDCD2Q8WVJ2 157 aa10.48□□□□□ -0.73
NPHP4-204ENST00000460696 ARL5BQ96KC2 179 aa10.48□□□□□ -0.73
NPHP4-204ENST00000460696 PLEKHJ1Q9NW61 149 aa10.48□□□□□ -0.73
NPHP4-204ENST00000460696 NTMQ9P121 344 aa10.48□□□□□ -0.73
NPHP4-204ENST00000460696 ST6GALNAC2Q9UJ37 374 aa10.48□□□□□ -0.73
NPHP4-204ENST00000460696 ZMIZ1Q9ULJ6 1067 aa10.48□□□□□ -0.73
NPHP4-204ENST00000460696 MTRF1O75570 445 aaKnown RBP10.47□□□□□ -0.73
NPHP4-204ENST00000460696 FXYD4P59646 89 aa10.47□□□□□ -0.73
NPHP4-204ENST00000460696 RPS15P62841 145 aaKnown RBP10.47□□□□□ -0.73
NPHP4-204ENST00000460696 SKP2Q13309 424 aa10.47□□□□□ -0.73
NPHP4-204ENST00000460696 GK2Q14410 553 aaPredicted RBP10.47□□□□□ -0.73
NPHP4-204ENST00000460696 LCN10Q6JVE6 187 aa10.47□□□□□ -0.73
NPHP4-204ENST00000460696 GUSBP11Q6P575 273 aa10.47□□□□□ -0.73
NPHP4-204ENST00000460696 MRGPREQ86SM8 312 aa10.47□□□□□ -0.73
NPHP4-204ENST00000460696 SLC22A24Q8N4F4 322 aa10.47□□□□□ -0.73
NPHP4-204ENST00000460696 DCUN1D4Q92564 292 aa10.47□□□□□ -0.73
NPHP4-204ENST00000460696 RAB3CQ96E17 227 aa10.47□□□□□ -0.73
NPHP4-204ENST00000460696 ADAM11O75078 769 aa10.47□□□□□ -0.73
NPHP4-204ENST00000460696 NXPH1P58417 271 aa10.47□□□□□ -0.73
NPHP4-204ENST00000460696 TRIP6Q15654 476 aaKnown RBP10.47□□□□□ -0.73
NPHP4-204ENST00000460696 ESCO2Q56NI9 601 aa10.47□□□□□ -0.73
NPHP4-204ENST00000460696 PWWP2BQ6NUJ5 590 aa10.47□□□□□ -0.73
NPHP4-204ENST00000460696 C3orf33Q6P1S2 294 aa10.47□□□□□ -0.73
NPHP4-204ENST00000460696 GLIPR1L1Q6UWM5 242 aa10.47□□□□□ -0.73
NPHP4-204ENST00000460696 CPEB2Q7Z5Q1 589 aaKnown RBP10.47□□□□□ -0.73
NPHP4-204ENST00000460696 PXKQ7Z7A4 578 aa10.47□□□□□ -0.73
NPHP4-204ENST00000460696 GABRG1Q8N1C3 465 aa10.47□□□□□ -0.73
NPHP4-204ENST00000460696 OR4K15Q8NH41 348 aa10.47□□□□□ -0.73
NPHP4-204ENST00000460696 SPTSSAQ969W0 71 aa10.47□□□□□ -0.73
NPHP4-204ENST00000460696 CDC6Q99741 560 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms