RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 DDX28Q9NUL7 540 aaKnown RBP9.24□□□□□ -0.93
UBR4-208ENST00000459947 LAMP3Q9UQV4 416 aa9.24□□□□□ -0.93
UBR4-208ENST00000459947 PCDHGB1Q9Y5G3 927 aa9.24□□□□□ -0.93
UBR4-208ENST00000459947 A0A1W2PPR1 153 aa9.24□□□□□ -0.93
UBR4-208ENST00000459947 ZNF503-AS2A6NEH8 195 aa9.24□□□□□ -0.93
UBR4-208ENST00000459947 CELA3BP08861 270 aa9.24□□□□□ -0.93
UBR4-208ENST00000459947 PYCR1P32322 319 aa9.24□□□□□ -0.93
UBR4-208ENST00000459947 RPS7P62081 194 aaKnown RBP9.24□□□□□ -0.93
UBR4-208ENST00000459947 SPOCK1Q08629 439 aa9.24□□□□□ -0.93
UBR4-208ENST00000459947 MBNL2Q5VZF2 373 aaKnown RBP9.24□□□□□ -0.93
UBR4-208ENST00000459947 ZNF774Q6NX45 483 aa9.24□□□□□ -0.93
UBR4-208ENST00000459947 KCTD18Q6PI47 426 aaPredicted RBP9.24□□□□□ -0.93
UBR4-208ENST00000459947 DRAM2Q6UX65 266 aa9.24□□□□□ -0.93
UBR4-208ENST00000459947 EGFL6Q8IUX8 553 aa9.24□□□□□ -0.93
UBR4-208ENST00000459947 IQCF1Q8N6M8 205 aa9.24□□□□□ -0.93
UBR4-208ENST00000459947 CPEB3Q8NE35 698 aaKnown RBP9.24□□□□□ -0.93
UBR4-208ENST00000459947 AKR7LQ8NHP1 331 aa9.24□□□□□ -0.93
UBR4-208ENST00000459947 LHFPL6Q9Y693 200 aa9.24□□□□□ -0.93
UBR4-208ENST00000459947 COMMD3-BMI1R4GMX3 469 aa9.24□□□□□ -0.93
UBR4-208ENST00000459947 C5orf49A4QMS7 147 aa9.24□□□□□ -0.93
UBR4-208ENST00000459947 LCKP06239 509 aa9.24□□□□□ -0.93
UBR4-208ENST00000459947 ZNF250P15622 560 aa9.24□□□□□ -0.93
UBR4-208ENST00000459947 GGTLC2Q14390 218 aa9.24□□□□□ -0.93
UBR4-208ENST00000459947 ADIPOQQ15848 244 aa9.24□□□□□ -0.93
UBR4-208ENST00000459947 DEGS2Q6QHC5 323 aa9.24□□□□□ -0.93
UBR4-208ENST00000459947 SLC16A9Q7RTY1 509 aa9.24□□□□□ -0.93
UBR4-208ENST00000459947 ZNF584Q8IVC4 421 aa9.24□□□□□ -0.93
UBR4-208ENST00000459947 OR9Q1Q8NGQ5 310 aa9.24□□□□□ -0.93
UBR4-208ENST00000459947 CIB1Q99828 191 aa9.24□□□□□ -0.93
UBR4-208ENST00000459947 HAO2Q9NYQ3 351 aa9.24□□□□□ -0.93
UBR4-208ENST00000459947 NKIRAS2Q9NYR9 191 aa9.24□□□□□ -0.93
UBR4-208ENST00000459947 TMEFF2Q9UIK5 374 aaPredicted RBP9.24□□□□□ -0.93
UBR4-208ENST00000459947 M0R233 179 aa9.23□□□□□ -0.93
UBR4-208ENST00000459947 ATP5J2P56134 94 aa9.23□□□□□ -0.93
UBR4-208ENST00000459947 PPP1CBP62140 327 aa9.23□□□□□ -0.93
UBR4-208ENST00000459947 SWI5Q1ZZU3 235 aa9.23□□□□□ -0.93
UBR4-208ENST00000459947 CCDC92Q53HC0 331 aaPredicted RBP9.23□□□□□ -0.93
UBR4-208ENST00000459947 PLBD1Q6P4A8 553 aa9.23□□□□□ -0.93
UBR4-208ENST00000459947 CPOQ8IVL8 374 aa9.23□□□□□ -0.93
UBR4-208ENST00000459947 OR1J1Q8NGS3 322 aa9.23□□□□□ -0.93
UBR4-208ENST00000459947 FGFBP3Q8TAT2 258 aa9.23□□□□□ -0.93
UBR4-208ENST00000459947 OTULINQ96BN8 352 aa9.23□□□□□ -0.93
UBR4-208ENST00000459947 WDR76Q9H967 626 aa9.23□□□□□ -0.93
UBR4-208ENST00000459947 ZNF391Q9UJN7 358 aa9.23□□□□□ -0.93
UBR4-208ENST00000459947 PRRC2CQ9Y520 2896 aaKnown RBP9.23□□□□□ -0.93
UBR4-208ENST00000459947 A0A1W2PPW3 197 aa9.23□□□□□ -0.93
UBR4-208ENST00000459947 IRGMA1A4Y4 181 aa9.23□□□□□ -0.93
UBR4-208ENST00000459947 EI24O14681 340 aa9.23□□□□□ -0.93
UBR4-208ENST00000459947 TFP02787 698 aa9.23□□□□□ -0.93
UBR4-208ENST00000459947 SPARCP09486 303 aa9.23□□□□□ -0.93
UBR4-208ENST00000459947 EFNA4P52798 201 aa9.23□□□□□ -0.93
UBR4-208ENST00000459947 IL18R1Q13478 541 aa9.23□□□□□ -0.93
UBR4-208ENST00000459947 SLC25A30Q5SVS4 291 aa9.23□□□□□ -0.93
UBR4-208ENST00000459947 TTC23Q5W5X9 447 aa9.23□□□□□ -0.93
UBR4-208ENST00000459947 KRT80Q6KB66 452 aa9.23□□□□□ -0.93
UBR4-208ENST00000459947 SETD9Q8NE22 299 aa9.23□□□□□ -0.93
UBR4-208ENST00000459947 HRASLS5Q96KN8 279 aa9.23□□□□□ -0.93
UBR4-208ENST00000459947 TSSK2Q96PF2 358 aa9.23□□□□□ -0.93
UBR4-208ENST00000459947 CNN2Q99439 309 aaKnown RBP9.23□□□□□ -0.93
UBR4-208ENST00000459947 KCNJ15Q99712 375 aa9.23□□□□□ -0.93
UBR4-208ENST00000459947 APOL4Q9BPW4 351 aa9.23□□□□□ -0.93
UBR4-208ENST00000459947 CACNG6Q9BXT2 260 aa9.23□□□□□ -0.93
UBR4-208ENST00000459947 OR51V1Q9H2C8 321 aa9.23□□□□□ -0.93
UBR4-208ENST00000459947 HINT3Q9NQE9 182 aaKnown RBP9.23□□□□□ -0.93
UBR4-208ENST00000459947 FAM171A2A8MVW0 826 aa9.23□□□□□ -0.93
UBR4-208ENST00000459947 NDUFS8O00217 210 aa9.23□□□□□ -0.93
UBR4-208ENST00000459947 ZNF254O75437 659 aa9.23□□□□□ -0.93
UBR4-208ENST00000459947 RPSAP08865 295 aaKnown RBP9.23□□□□□ -0.93
UBR4-208ENST00000459947 PATE4P0C8F1 98 aa9.23□□□□□ -0.93
UBR4-208ENST00000459947 FOSL1P15407 271 aa9.23□□□□□ -0.93
UBR4-208ENST00000459947 GGT2P36268 569 aa9.23□□□□□ -0.93
UBR4-208ENST00000459947 MRPS11P82912 194 aaKnown RBP9.23□□□□□ -0.93
UBR4-208ENST00000459947 LINC01590Q5TEZ4 76 aa9.23□□□□□ -0.93
UBR4-208ENST00000459947 MEPCEQ7L2J0 689 aaKnown RBP9.23□□□□□ -0.93
UBR4-208ENST00000459947 CBR4Q8N4T8 237 aa9.23□□□□□ -0.93
UBR4-208ENST00000459947 OR6N2Q8NGY6 317 aa9.23□□□□□ -0.93
UBR4-208ENST00000459947 SLC22A4Q9H015 551 aa9.23□□□□□ -0.93
UBR4-208ENST00000459947 MRPL22Q9NWU5 206 aaKnown RBP9.23□□□□□ -0.93
UBR4-208ENST00000459947 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP9.23□□□□□ -0.93
UBR4-208ENST00000459947 IGLV3-9A0A075B6K5 115 aa9.22□□□□□ -0.93
UBR4-208ENST00000459947 IFNL4K9M1U5 179 aa9.22□□□□□ -0.93
UBR4-208ENST00000459947 DCTN6O00399 190 aa9.22□□□□□ -0.93
UBR4-208ENST00000459947 ZNF593O00488 134 aaPredicted RBP9.22□□□□□ -0.93
UBR4-208ENST00000459947 IGFBP1P08833 259 aaPredicted RBP9.22□□□□□ -0.93
UBR4-208ENST00000459947 ANPEPP15144 967 aa9.22□□□□□ -0.93
UBR4-208ENST00000459947 TNFSF4P23510 183 aa9.22□□□□□ -0.93
UBR4-208ENST00000459947 SNRPGP62308 76 aaKnown RBP9.22□□□□□ -0.93
UBR4-208ENST00000459947 MZT1Q08AG7 82 aa9.22□□□□□ -0.93
UBR4-208ENST00000459947 KRTAP27-1Q3LI81 207 aa9.22□□□□□ -0.93
UBR4-208ENST00000459947 KLHL12Q53G59 568 aa9.22□□□□□ -0.93
UBR4-208ENST00000459947 UGT2A3Q6UWM9 527 aa9.22□□□□□ -0.93
UBR4-208ENST00000459947 PTP4A1Q93096 173 aa9.22□□□□□ -0.93
UBR4-208ENST00000459947 MS4A3Q96HJ5 214 aa9.22□□□□□ -0.93
UBR4-208ENST00000459947 HCAR1Q9BXC0 346 aa9.22□□□□□ -0.93
UBR4-208ENST00000459947 ABCB9Q9NP78 766 aa9.22□□□□□ -0.93
UBR4-208ENST00000459947 H0YHG0 523 aa9.22□□□□□ -0.93
UBR4-208ENST00000459947 XRCC2O43543 280 aa9.22□□□□□ -0.93
UBR4-208ENST00000459947 IGHV3-13P01766 116 aa9.22□□□□□ -0.93
UBR4-208ENST00000459947 RAC2P15153 192 aa9.22□□□□□ -0.93
UBR4-208ENST00000459947 ERI1Q8IV48 349 aaKnown RBP9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms