RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 FCN2Q15485 313 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 TMEM42Q69YG0 159 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 PNCKQ6P2M8 343 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 KIRREL2Q6UWL6 708 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 TMEM107Q6UX40 140 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 HACD2Q6Y1H2 254 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 MICAL3Q7RTP6 2002 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 DEFB128Q7Z7B8 93 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 TMEM123Q8N131 208 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 YIPF7Q8N8F6 280 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 RNASEH2CQ8TDP1 164 aaKnown RBP4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 RXFP4Q8TDU9 374 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 ADAMTS17Q8TE56 1095 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 TNFAIP8L1Q8WVP5 186 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 MCHR2Q969V1 340 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 FAM131CQ96AQ9 280 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 YIPF6Q96EC8 236 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 COQ2Q96H96 371 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 NODALQ96S42 347 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 NUDT9Q9BW91 350 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 MS4A8Q9BY19 250 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 ZNF436Q9C0F3 470 aaPredicted RBP4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 NUAK2Q9H093 628 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 KCNK9Q9NPC2 374 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 TRIM36Q9NQ86 728 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 FAM49BQ9NUQ9 324 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 HHLA2Q9UM44 414 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 A3GALT2U3KPV4 340 aa4.29□□□□□ -1.72
CCDC88A-209ENST00000456975 A0A1B0GUS0 222 aa4.28□□□□□ -1.72
CCDC88A-209ENST00000456975 C13orf42A0A1B0GVH6 325 aa4.28□□□□□ -1.72
CCDC88A-209ENST00000456975 A0A1W2PR77 199 aa4.28□□□□□ -1.72
CCDC88A-209ENST00000456975 NPIPB9F8W1W9 429 aa4.28□□□□□ -1.72
CCDC88A-209ENST00000456975 TRAPPC2LH3BP13 241 aa4.28□□□□□ -1.72
CCDC88A-209ENST00000456975 GPR31O00270 319 aa4.28□□□□□ -1.72
CCDC88A-209ENST00000456975 SDHDO14521 159 aa4.28□□□□□ -1.72
CCDC88A-209ENST00000456975 PDCD5O14737 125 aa4.28□□□□□ -1.72
CCDC88A-209ENST00000456975 SLC16A5O15375 505 aa4.28□□□□□ -1.72
CCDC88A-209ENST00000456975 LATO43561 262 aa4.28□□□□□ -1.72
CCDC88A-209ENST00000456975 CDC40O60508 579 aaKnown RBP eCLIP4.28□□□□□ -1.72
CCDC88A-209ENST00000456975 EDF1O60869 148 aaKnown RBP4.28□□□□□ -1.72
CCDC88A-209ENST00000456975 IL6RP08887 468 aaPredicted RBP4.28□□□□□ -1.72
CCDC88A-209ENST00000456975 ZNF286BP0CG31 522 aa4.28□□□□□ -1.72
CCDC88A-209ENST00000456975 GCSHP23434 173 aa4.28□□□□□ -1.72
CCDC88A-209ENST00000456975 PRPH2P23942 346 aa4.28□□□□□ -1.72
CCDC88A-209ENST00000456975 HRH2P25021 359 aa4.28□□□□□ -1.72
CCDC88A-209ENST00000456975 S100A2P29034 98 aa4.28□□□□□ -1.72
CCDC88A-209ENST00000456975 SSTR4P31391 388 aa4.28□□□□□ -1.72
CCDC88A-209ENST00000456975 TIA1P31483 386 aaKnown RBP eCLIP4.28□□□□□ -1.72
CCDC88A-209ENST00000456975 ETV6P41212 452 aa4.28□□□□□ -1.72
CCDC88A-209ENST00000456975 PPT1P50897 306 aa4.28□□□□□ -1.72
CCDC88A-209ENST00000456975 TAS2R38P59533 333 aa4.28□□□□□ -1.72
CCDC88A-209ENST00000456975 TBPL1P62380 186 aa4.28□□□□□ -1.72
CCDC88A-209ENST00000456975 OR5I1Q13606 314 aa4.28□□□□□ -1.72
CCDC88A-209ENST00000456975 KIAA0141Q14154 515 aaPredicted RBP4.28□□□□□ -1.72
CCDC88A-209ENST00000456975 ZNF234Q14588 700 aa4.28□□□□□ -1.72
CCDC88A-209ENST00000456975 UGCGQ16739 394 aa4.28□□□□□ -1.72
CCDC88A-209ENST00000456975 TMEM176BQ3YBM2 270 aaPredicted RBP4.28□□□□□ -1.72
CCDC88A-209ENST00000456975 IDNKQ5T6J7 187 aa4.28□□□□□ -1.72
CCDC88A-209ENST00000456975 METRNLQ641Q3 311 aa4.28□□□□□ -1.72
CCDC88A-209ENST00000456975 H3F3CQ6NXT2 135 aa4.28□□□□□ -1.72
CCDC88A-209ENST00000456975 TREML4Q6UXN2 200 aa4.28□□□□□ -1.72
CCDC88A-209ENST00000456975 ZNF517Q6ZMY9 492 aaPredicted RBP4.28□□□□□ -1.72
CCDC88A-209ENST00000456975 MOB3CQ70IA8 216 aa4.28□□□□□ -1.72
CCDC88A-209ENST00000456975 RBM23Q86U06 439 aaKnown RBP4.28□□□□□ -1.72
CCDC88A-209ENST00000456975 ATP6V1C2Q8NEY4 427 aa4.28□□□□□ -1.72
CCDC88A-209ENST00000456975 WDR20Q8TBZ3 569 aa4.28□□□□□ -1.72
CCDC88A-209ENST00000456975 TMEM163Q8TC26 289 aa4.28□□□□□ -1.72
CCDC88A-209ENST00000456975 PIGCQ92535 297 aa4.28□□□□□ -1.72
CCDC88A-209ENST00000456975 GLYATL1Q969I3 302 aa4.28□□□□□ -1.72
CCDC88A-209ENST00000456975 SLC25A28Q96A46 364 aa4.28□□□□□ -1.72
CCDC88A-209ENST00000456975 TMEM125Q96AQ2 219 aa4.28□□□□□ -1.72
CCDC88A-209ENST00000456975 MOAP1Q96BY2 351 aa4.28□□□□□ -1.72
CCDC88A-209ENST00000456975 VSTM2LQ96N03 204 aa4.28□□□□□ -1.72
CCDC88A-209ENST00000456975 ZNF75AQ96N20 296 aa4.28□□□□□ -1.72
CCDC88A-209ENST00000456975 C1QTNF6Q9BXI9 259 aa4.28□□□□□ -1.72
CCDC88A-209ENST00000456975 SLC29A3Q9BZD2 475 aa4.28□□□□□ -1.72
CCDC88A-209ENST00000456975 CST9LQ9H4G1 147 aa4.28□□□□□ -1.72
CCDC88A-209ENST00000456975 ANKHQ9HCJ1 492 aa4.28□□□□□ -1.72
CCDC88A-209ENST00000456975 GCM1Q9NP62 436 aa4.28□□□□□ -1.72
CCDC88A-209ENST00000456975 SEMA4GQ9NTN9 838 aa4.28□□□□□ -1.72
CCDC88A-209ENST00000456975 C20orf141Q9NUB4 165 aa4.28□□□□□ -1.72
CCDC88A-209ENST00000456975 TMEM161AQ9NX61 479 aa4.28□□□□□ -1.72
CCDC88A-209ENST00000456975 B3GAT1Q9P2W7 334 aa4.28□□□□□ -1.72
CCDC88A-209ENST00000456975 VPS29Q9UBQ0 182 aa4.28□□□□□ -1.72
CCDC88A-209ENST00000456975 MUTYHQ9UIF7 546 aa4.28□□□□□ -1.72
CCDC88A-209ENST00000456975 VPREB3Q9UKI3 123 aa4.28□□□□□ -1.72
CCDC88A-209ENST00000456975 ATG4BQ9Y4P1 393 aa4.28□□□□□ -1.72
CCDC88A-209ENST00000456975 PRORSD1PA6NEY8 169 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 ANTXRLA6NF34 631 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 ANKRD30BLA7E2S9 258 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 HSPB2A8KAH6 182 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 NBR2O15453 112 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 PAGE4O60829 102 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 OR2J3O76001 311 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 ETHE1O95571 254 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 ALDOCP09972 364 aaKnown RBP4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 SMIM10L2AP0DMW4 78 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 SMIM10L2BP0DMW5 78 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 LIPCP11150 499 aa4.27□□□□□ -1.73
CCDC88A-209ENST00000456975 MMP11P24347 488 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms