RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 Q6ZTK2 550 aa13.43□□□□□ -0.26
LDLR-202ENST00000455727 WDSUB1Q8N9V3 476 aa13.43□□□□□ -0.26
LDLR-202ENST00000455727 SNAPC3Q92966 411 aa13.43□□□□□ -0.26
LDLR-202ENST00000455727 SLAMF6Q96DU3 332 aa13.43□□□□□ -0.26
LDLR-202ENST00000455727 C1orf198Q9H425 327 aa13.43□□□□□ -0.26
LDLR-202ENST00000455727 FAM206AQ9NX38 181 aa13.43□□□□□ -0.26
LDLR-202ENST00000455727 GPN3Q9UHW5 284 aaPredicted RBP13.43□□□□□ -0.26
LDLR-202ENST00000455727 FBXL2Q9UKC9 423 aa13.43□□□□□ -0.26
LDLR-202ENST00000455727 HDGFL3Q9Y3E1 203 aa13.43□□□□□ -0.26
LDLR-202ENST00000455727 CHCHD2Q9Y6H1 151 aaPredicted RBP13.43□□□□□ -0.26
LDLR-202ENST00000455727 KDM4BO94953 1096 aa13.42□□□□□ -0.26
LDLR-202ENST00000455727 PGA4P0DJD7 388 aa13.42□□□□□ -0.26
LDLR-202ENST00000455727 PGA3P0DJD8 388 aa13.42□□□□□ -0.26
LDLR-202ENST00000455727 RAD52P43351 418 aa13.42□□□□□ -0.26
LDLR-202ENST00000455727 FAAP20Q6NZ36 180 aa13.42□□□□□ -0.26
LDLR-202ENST00000455727 OR4C16Q8NGL9 310 aa13.42□□□□□ -0.26
LDLR-202ENST00000455727 OR6X1Q8NH79 312 aa13.42□□□□□ -0.26
LDLR-202ENST00000455727 GPX8Q8TED1 209 aa13.42□□□□□ -0.26
LDLR-202ENST00000455727 CENPMQ9NSP4 180 aa13.42□□□□□ -0.26
LDLR-202ENST00000455727 MRPS18BQ9Y676 258 aaKnown RBP13.42□□□□□ -0.26
LDLR-202ENST00000455727 NTN3O00634 580 aaPredicted RBP13.42□□□□□ -0.26
LDLR-202ENST00000455727 TRAF3IP2O43734 574 aaPredicted RBP13.42□□□□□ -0.26
LDLR-202ENST00000455727 IGHG1P01857 330 aa13.42□□□□□ -0.26
LDLR-202ENST00000455727 CFIP05156 583 aa13.42□□□□□ -0.26
LDLR-202ENST00000455727 KLK3P07288 261 aaPredicted RBP13.42□□□□□ -0.26
LDLR-202ENST00000455727 AKAIN1P0CW23 69 aa13.42□□□□□ -0.26
LDLR-202ENST00000455727 DNASE1P24855 282 aa13.42□□□□□ -0.26
LDLR-202ENST00000455727 HTR2BP41595 481 aa13.42□□□□□ -0.26
LDLR-202ENST00000455727 C19orf57Q0VDD7 668 aa13.42□□□□□ -0.26
LDLR-202ENST00000455727 ZNF626Q68DY1 528 aa13.42□□□□□ -0.26
LDLR-202ENST00000455727 CORO6Q6QEF8 472 aa13.42□□□□□ -0.26
LDLR-202ENST00000455727 KLHL24Q6TFL4 600 aa13.42□□□□□ -0.26
LDLR-202ENST00000455727 ADGRE4PQ86SQ3 457 aa13.42□□□□□ -0.26
LDLR-202ENST00000455727 ELMOD2Q8IZ81 293 aa13.42□□□□□ -0.26
LDLR-202ENST00000455727 FAM109AQ8N4B1 249 aa13.42□□□□□ -0.26
LDLR-202ENST00000455727 NOXO1Q8NFA2 376 aa13.42□□□□□ -0.26
LDLR-202ENST00000455727 OR4K17Q8NGC6 315 aa13.42□□□□□ -0.26
LDLR-202ENST00000455727 ZBTB8AQ96BR9 441 aa13.42□□□□□ -0.26
LDLR-202ENST00000455727 OXGR1Q96P68 337 aa13.42□□□□□ -0.26
LDLR-202ENST00000455727 ZNF700Q9H0M5 742 aa13.42□□□□□ -0.26
LDLR-202ENST00000455727 SCPEP1Q9HB40 452 aa13.42□□□□□ -0.26
LDLR-202ENST00000455727 SLC23A1Q9UHI7 598 aa13.42□□□□□ -0.26
LDLR-202ENST00000455727 PHF3Q92576 2039 aaKnown RBP13.42□□□□□ -0.26
LDLR-202ENST00000455727 EML6Q6ZMW3 1958 aa13.42□□□□□ -0.26
LDLR-202ENST00000455727 IGHV1-45A0A0A0MS14 117 aa13.41□□□□□ -0.26
LDLR-202ENST00000455727 D6RAR5 112 aa13.41□□□□□ -0.26
LDLR-202ENST00000455727 CREBL2O60519 120 aaPredicted RBP13.41□□□□□ -0.26
LDLR-202ENST00000455727 TPOP07202 933 aa13.41□□□□□ -0.26
LDLR-202ENST00000455727 SDHBP21912 280 aa13.41□□□□□ -0.26
LDLR-202ENST00000455727 DUSP3P51452 185 aaPredicted RBP13.41□□□□□ -0.26
LDLR-202ENST00000455727 CLRN1P58418 232 aa13.41□□□□□ -0.26
LDLR-202ENST00000455727 ACTBP60709 375 aa13.41□□□□□ -0.26
LDLR-202ENST00000455727 ACTG1P63261 375 aa13.41□□□□□ -0.26
LDLR-202ENST00000455727 INPP5JQ15735 1006 aaPredicted RBP13.41□□□□□ -0.26
LDLR-202ENST00000455727 EXT1Q16394 746 aa13.41□□□□□ -0.26
LDLR-202ENST00000455727 NLRC3Q7RTR2 1065 aa13.41□□□□□ -0.26
LDLR-202ENST00000455727 CLEC1AQ8NC01 280 aa13.41□□□□□ -0.26
LDLR-202ENST00000455727 AGBL5Q8NDL9 886 aa13.41□□□□□ -0.26
LDLR-202ENST00000455727 OR51A2Q8NGJ7 313 aa13.41□□□□□ -0.26
LDLR-202ENST00000455727 OR6N1Q8NGY5 312 aa13.41□□□□□ -0.26
LDLR-202ENST00000455727 MAFAQ8NHW3 353 aaPredicted RBP13.41□□□□□ -0.26
LDLR-202ENST00000455727 IMMP1LQ96LU5 166 aa13.41□□□□□ -0.26
LDLR-202ENST00000455727 SLCO5A1Q9H2Y9 848 aa13.41□□□□□ -0.26
LDLR-202ENST00000455727 A0A087WZY1 265 aa13.41□□□□□ -0.26
LDLR-202ENST00000455727 TTRP02766 147 aa13.41□□□□□ -0.26
LDLR-202ENST00000455727 ACSM4P0C7M7 580 aa13.41□□□□□ -0.26
LDLR-202ENST00000455727 ZNF28P17035 718 aa13.41□□□□□ -0.26
LDLR-202ENST00000455727 SELENOPP49908 381 aa13.41□□□□□ -0.26
LDLR-202ENST00000455727 PER3P56645 1201 aa13.41□□□□□ -0.26
LDLR-202ENST00000455727 ZFP36L1Q07352 338 aaKnown RBP13.41□□□□□ -0.26
LDLR-202ENST00000455727 HIST3H3Q16695 136 aa13.41□□□□□ -0.26
LDLR-202ENST00000455727 OPN5Q6U736 354 aa13.41□□□□□ -0.26
LDLR-202ENST00000455727 MEIOBQ8N635 442 aa13.41□□□□□ -0.26
LDLR-202ENST00000455727 SORCS2Q96PQ0 1159 aa13.41□□□□□ -0.26
LDLR-202ENST00000455727 OR5B2Q96R09 309 aa13.41□□□□□ -0.26
LDLR-202ENST00000455727 SEC22CQ9BRL7 303 aa13.41□□□□□ -0.26
LDLR-202ENST00000455727 KCNK15Q9H427 330 aa13.41□□□□□ -0.26
LDLR-202ENST00000455727 METTL17Q9H7H0 456 aaPredicted RBP13.41□□□□□ -0.26
LDLR-202ENST00000455727 CGGBP1Q9UFW8 167 aaPredicted RBP13.41□□□□□ -0.26
LDLR-202ENST00000455727 RHBDD3Q9Y3P4 386 aa13.41□□□□□ -0.26
LDLR-202ENST00000455727 DCDC2BA2VCK2 349 aa13.4□□□□□ -0.26
LDLR-202ENST00000455727 P2RY10O00398 339 aa13.4□□□□□ -0.26
LDLR-202ENST00000455727 DOK2O60496 412 aa13.4□□□□□ -0.26
LDLR-202ENST00000455727 LPLP06858 475 aa13.4□□□□□ -0.26
LDLR-202ENST00000455727 MELTFP08582 738 aa13.4□□□□□ -0.26
LDLR-202ENST00000455727 ANXA7P20073 488 aaKnown RBP13.4□□□□□ -0.26
LDLR-202ENST00000455727 RAB6AP20340 208 aa13.4□□□□□ -0.26
LDLR-202ENST00000455727 GNG2P59768 71 aa13.4□□□□□ -0.26
LDLR-202ENST00000455727 GUCA2AQ02747 115 aa13.4□□□□□ -0.26
LDLR-202ENST00000455727 SPOCK1Q08629 439 aa13.4□□□□□ -0.26
LDLR-202ENST00000455727 KCNMB1Q16558 191 aa13.4□□□□□ -0.26
LDLR-202ENST00000455727 ZBTB37Q5TC79 503 aa13.4□□□□□ -0.26
LDLR-202ENST00000455727 SLC25A47Q6Q0C1 308 aa13.4□□□□□ -0.26
LDLR-202ENST00000455727 FAM198BQ6UWH4 519 aa13.4□□□□□ -0.26
LDLR-202ENST00000455727 ZNF813Q6ZN06 617 aa13.4□□□□□ -0.26
LDLR-202ENST00000455727 SLC36A1Q7Z2H8 476 aa13.4□□□□□ -0.26
LDLR-202ENST00000455727 OR10S1Q8NGN2 331 aa13.4□□□□□ -0.26
LDLR-202ENST00000455727 OR2T35Q8NGX2 323 aa13.4□□□□□ -0.26
LDLR-202ENST00000455727 MOB1AQ9H8S9 216 aa13.4□□□□□ -0.26
LDLR-202ENST00000455727 ZNF107Q9UII5 783 aaPredicted RBP13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms