RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 UBAP1Q9NZ09 502 aa13.73□□□□□ -0.21
USP40-206ENST00000443711 CNOT2Q9NZN8 540 aaKnown RBP13.73□□□□□ -0.21
USP40-206ENST00000443711 NPAP1Q9NZP6 1156 aa13.73□□□□□ -0.21
USP40-206ENST00000443711 CRIM1Q9NZV1 1036 aa13.73□□□□□ -0.21
USP40-206ENST00000443711 PSORS1C1Q9UIG5 152 aa13.73□□□□□ -0.21
USP40-206ENST00000443711 ATPIF1Q9UII2 106 aa13.73□□□□□ -0.21
USP40-206ENST00000443711 TPRKBQ9Y3C4 175 aa13.73□□□□□ -0.21
USP40-206ENST00000443711 RTTNQ86VV8 2226 aa13.73□□□□□ -0.21
USP40-206ENST00000443711 GCN1Q92616 2671 aaKnown RBP13.73□□□□□ -0.21
USP40-206ENST00000443711 ICE1Q9Y2F5 2266 aa13.73□□□□□ -0.21
USP40-206ENST00000443711 SYNGR3O43761 229 aa13.72□□□□□ -0.21
USP40-206ENST00000443711 PIPP12273 146 aaPredicted RBP13.72□□□□□ -0.21
USP40-206ENST00000443711 CRYGSP22914 178 aa13.72□□□□□ -0.21
USP40-206ENST00000443711 APLNRP35414 380 aa13.72□□□□□ -0.21
USP40-206ENST00000443711 ECH1Q13011 328 aa13.72□□□□□ -0.21
USP40-206ENST00000443711 TAF13Q15543 124 aa13.72□□□□□ -0.21
USP40-206ENST00000443711 RBM48Q5RL73 367 aaKnown RBP13.72□□□□□ -0.21
USP40-206ENST00000443711 KCTD18Q6PI47 426 aaPredicted RBP13.72□□□□□ -0.21
USP40-206ENST00000443711 RHOUQ7L0Q8 258 aa13.72□□□□□ -0.21
USP40-206ENST00000443711 ZNF786Q8N393 782 aa13.72□□□□□ -0.21
USP40-206ENST00000443711 ACBD7Q8N6N7 88 aa13.72□□□□□ -0.21
USP40-206ENST00000443711 ZNF540Q8NDQ6 660 aa13.72□□□□□ -0.21
USP40-206ENST00000443711 CPEB3Q8NE35 698 aaKnown RBP13.72□□□□□ -0.21
USP40-206ENST00000443711 IL17RDQ8NFM7 739 aa13.72□□□□□ -0.21
USP40-206ENST00000443711 OR52I1Q8NGK6 324 aa13.72□□□□□ -0.21
USP40-206ENST00000443711 OR1J2Q8NGS2 313 aa13.72□□□□□ -0.21
USP40-206ENST00000443711 OR1F12Q8NHA8 337 aa13.72□□□□□ -0.21
USP40-206ENST00000443711 TBX5Q99593 518 aa13.72□□□□□ -0.21
USP40-206ENST00000443711 YTHDF1Q9BYJ9 559 aaKnown RBP13.72□□□□□ -0.21
USP40-206ENST00000443711 CENPMQ9NSP4 180 aa13.72□□□□□ -0.21
USP40-206ENST00000443711 COPS3Q9UNS2 423 aa13.72□□□□□ -0.21
USP40-206ENST00000443711 PCDHGB5Q9Y5G0 923 aa13.72□□□□□ -0.21
USP40-206ENST00000443711 DOPEY2Q9Y3R5 2298 aa13.71□□□□□ -0.21
USP40-206ENST00000443711 IGHV1-18A0A0C4DH31 117 aa13.71□□□□□ -0.21
USP40-206ENST00000443711 DAPL1A0PJW8 107 aa13.71□□□□□ -0.21
USP40-206ENST00000443711 ZNF878C9JN71 531 aa13.71□□□□□ -0.21
USP40-206ENST00000443711 J3QRE1 110 aa13.71□□□□□ -0.21
USP40-206ENST00000443711 CELA3BP08861 270 aa13.71□□□□□ -0.21
USP40-206ENST00000443711 PTAFRP25105 342 aa13.71□□□□□ -0.21
USP40-206ENST00000443711 STOMP27105 288 aa13.71□□□□□ -0.21
USP40-206ENST00000443711 APEX1P27695 318 aaKnown RBP13.71□□□□□ -0.21
USP40-206ENST00000443711 DCKP27707 260 aa13.71□□□□□ -0.21
USP40-206ENST00000443711 HTR5AP47898 357 aa13.71□□□□□ -0.21
USP40-206ENST00000443711 GDI2P50395 445 aaKnown RBP13.71□□□□□ -0.21
USP40-206ENST00000443711 ST3GAL4Q11206 333 aa13.71□□□□□ -0.21
USP40-206ENST00000443711 BEX5Q5H9J7 111 aa13.71□□□□□ -0.21
USP40-206ENST00000443711 TMEM108Q6UXF1 575 aa13.71□□□□□ -0.21
USP40-206ENST00000443711 ZNF584Q8IVC4 421 aa13.71□□□□□ -0.21
USP40-206ENST00000443711 SLC30A7Q8NEW0 376 aa13.71□□□□□ -0.21
USP40-206ENST00000443711 OR10S1Q8NGN2 331 aa13.71□□□□□ -0.21
USP40-206ENST00000443711 RNF133Q8WVZ7 376 aa13.71□□□□□ -0.21
USP40-206ENST00000443711 TMEM80Q96HE8 168 aa13.71□□□□□ -0.21
USP40-206ENST00000443711 MS4A3Q96HJ5 214 aa13.71□□□□□ -0.21
USP40-206ENST00000443711 AMELYQ99218 206 aa13.71□□□□□ -0.21
USP40-206ENST00000443711 MYCBPQ99417 103 aaPredicted RBP13.71□□□□□ -0.21
USP40-206ENST00000443711 COQ7Q99807 217 aa13.71□□□□□ -0.21
USP40-206ENST00000443711 ATF6BQ99941 703 aa13.71□□□□□ -0.21
USP40-206ENST00000443711 ESRP2Q9H6T0 727 aaKnown RBP13.71□□□□□ -0.21
USP40-206ENST00000443711 PNRC2Q9NPJ4 139 aaKnown RBP13.71□□□□□ -0.21
USP40-206ENST00000443711 INPP5EQ9NRR6 644 aa13.71□□□□□ -0.21
USP40-206ENST00000443711 MYRFQ9Y2G1 1151 aa13.71□□□□□ -0.21
USP40-206ENST00000443711 KLHDC2Q9Y2U9 406 aa13.71□□□□□ -0.21
USP40-206ENST00000443711 USP9YO00507 2555 aaPredicted RBP13.7□□□□□ -0.22
USP40-206ENST00000443711 A0A1W2PQL4 384 aaPredicted RBP13.7□□□□□ -0.22
USP40-206ENST00000443711 OR6C6A6NF89 314 aa13.7□□□□□ -0.22
USP40-206ENST00000443711 PTGES3LE9PB15 166 aa13.7□□□□□ -0.22
USP40-206ENST00000443711 IGHA1P01876 353 aa13.7□□□□□ -0.22
USP40-206ENST00000443711 H2BFMP0C1H6 154 aa13.7□□□□□ -0.22
USP40-206ENST00000443711 CECR9P0C854 216 aa13.7□□□□□ -0.22
USP40-206ENST00000443711 CD40P25942 277 aa13.7□□□□□ -0.22
USP40-206ENST00000443711 DAZAP2Q15038 168 aaPredicted RBP13.7□□□□□ -0.22
USP40-206ENST00000443711 TBC1D28Q2M2D7 210 aa13.7□□□□□ -0.22
USP40-206ENST00000443711 DEGS2Q6QHC5 323 aa13.7□□□□□ -0.22
USP40-206ENST00000443711 ZNF322Q6U7Q0 402 aaPredicted RBP13.7□□□□□ -0.22
USP40-206ENST00000443711 AHSA2Q719I0 299 aa13.7□□□□□ -0.22
USP40-206ENST00000443711 SPATC1Q76KD6 591 aa13.7□□□□□ -0.22
USP40-206ENST00000443711 KRT77Q7Z794 578 aa13.7□□□□□ -0.22
USP40-206ENST00000443711 HIST2H2ABQ8IUE6 130 aaPredicted RBP13.7□□□□□ -0.22
USP40-206ENST00000443711 STX19Q8N4C7 294 aa13.7□□□□□ -0.22
USP40-206ENST00000443711 IPCEF1Q8WWN9 437 aaPredicted RBP13.7□□□□□ -0.22
USP40-206ENST00000443711 MYDGFQ969H8 173 aa13.7□□□□□ -0.22
USP40-206ENST00000443711 MRPL48Q96GC5 212 aaKnown RBP13.7□□□□□ -0.22
USP40-206ENST00000443711 PSMG3-AS1Q96PY0 264 aa13.7□□□□□ -0.22
USP40-206ENST00000443711 KCNS3Q9BQ31 491 aa13.7□□□□□ -0.22
USP40-206ENST00000443711 COPS4Q9BT78 406 aa13.7□□□□□ -0.22
USP40-206ENST00000443711 CDH20Q9HBT6 801 aa13.7□□□□□ -0.22
USP40-206ENST00000443711 DDX28Q9NUL7 540 aaKnown RBP13.7□□□□□ -0.22
USP40-206ENST00000443711 FKBP14Q9NWM8 211 aa13.7□□□□□ -0.22
USP40-206ENST00000443711 KCNN3Q9UGI6 736 aa13.7□□□□□ -0.22
USP40-206ENST00000443711 BLOC1S6Q9UL45 172 aa13.7□□□□□ -0.22
USP40-206ENST00000443711 DIMT1Q9UNQ2 313 aaKnown RBP13.7□□□□□ -0.22
USP40-206ENST00000443711 LRCH1Q9Y2L9 728 aa13.7□□□□□ -0.22
USP40-206ENST00000443711 LOC100509620A0A075B734 347 aa13.69□□□□□ -0.22
USP40-206ENST00000443711 DPRXA6NFQ7 191 aa13.69□□□□□ -0.22
USP40-206ENST00000443711 ZNF254O75437 659 aa13.69□□□□□ -0.22
USP40-206ENST00000443711 CRYAAP02489 173 aa13.69□□□□□ -0.22
USP40-206ENST00000443711 COX6B1P14854 86 aa13.69□□□□□ -0.22
USP40-206ENST00000443711 CRHBPP24387 322 aa13.69□□□□□ -0.22
USP40-206ENST00000443711 NR1H2P55055 460 aa13.69□□□□□ -0.22
USP40-206ENST00000443711 GRB2P62993 217 aaKnown RBP13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms