RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 MMP11P24347 488 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 DAPP51397 102 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 CDKN2DP55273 166 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 RPS15P62841 145 aaKnown RBP6.6□□□□□ -1.35
VPS53-204ENST00000437048 SLC10A2Q12908 348 aaPredicted RBP6.6□□□□□ -1.35
VPS53-204ENST00000437048 MPV17LQ2QL34 196 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 GGNBP1Q5YKI7 109 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 ABHD5Q8WTS1 349 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 TAAR6Q96RI8 345 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 ZNF552Q9H707 407 aaPredicted RBP6.6□□□□□ -1.35
VPS53-204ENST00000437048 RALGAPA1Q6GYQ0 2036 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 OTOL1A6NHN0 477 aaPredicted RBP6.6□□□□□ -1.35
VPS53-204ENST00000437048 CNMDO75829 334 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 MMP9P14780 707 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 ARNTP27540 789 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 ATP5IP56385 69 aaPredicted RBP6.6□□□□□ -1.35
VPS53-204ENST00000437048 LHFPL2Q6ZUX7 228 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 ZNF707Q96C28 371 aaPredicted RBP6.6□□□□□ -1.35
VPS53-204ENST00000437048 NUDT22Q9BRQ3 303 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 INSL5Q9Y5Q6 135 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 C11orf98E9PRG8 122 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 CRISP2P16562 243 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 SLC6A1P30531 599 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 HERVK_113P61574 105 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 TMEM241Q24JQ0 296 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 TREML2Q5T2D2 321 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 SPSB1Q96BD6 273 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 EID2BQ96D98 161 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 SGPP1Q9BX95 441 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 NCOR1P1Q9H4R4 102 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 EMCNQ9ULC0 261 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 MRPS16Q9Y3D3 137 aaKnown RBP6.6□□□□□ -1.35
VPS53-204ENST00000437048 ZNF98A6NK75 572 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 NLGN4XQ8N0W4 816 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 OR5K2Q8NHB8 316 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 ZPBPQ9BS86 351 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 ST6GALNAC5Q9BVH7 336 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 WSB1Q9Y6I7 421 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 PQLC2LA1A4F0 135 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 F5H5K5 113 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 LDB2O43679 373 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 CD1AP06126 327 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 APEX1P27695 318 aaKnown RBP6.6□□□□□ -1.35
VPS53-204ENST00000437048 OR8B8Q15620 311 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 HIST3H3Q16695 136 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 TP53I3Q53FA7 332 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 GLIS1Q8NBF1 620 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 OR10Q1Q8NGQ4 319 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 PKDREJQ9NTG1 2253 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 SLC17A2O00624 439 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 TBX19O60806 448 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 CSO75390 466 aaKnown RBP6.6□□□□□ -1.35
VPS53-204ENST00000437048 PRDX1Q06830 199 aaKnown RBP6.6□□□□□ -1.35
VPS53-204ENST00000437048 PLCXD3Q63HM9 321 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 ARL14EPQ8N8R7 260 aaPredicted RBP6.6□□□□□ -1.35
VPS53-204ENST00000437048 PHOSPHO2Q8TCD6 241 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 GPR152Q8TDT2 470 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 MBOAT4Q96T53 435 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 RARRES3Q9UL19 164 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 ZNF142P52746 1687 aaPredicted RBP6.6□□□□□ -1.35
VPS53-204ENST00000437048 SLC35E2P0CK97 266 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 AMTP48728 403 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 RBP2P50120 134 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 ISXQ2M1V0 245 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 NKAIN1Q4KMZ8 207 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 ARSJQ5FYB0 599 aaPredicted RBP6.6□□□□□ -1.35
VPS53-204ENST00000437048 FAM180BQ6P0A1 224 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 OR10A7Q8NGE5 316 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 LPAR3Q9UBY5 353 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 SNX11Q9Y5W9 270 aa6.6□□□□□ -1.35
VPS53-204ENST00000437048 A0A087WV62 115 aa6.59□□□□□ -1.35
VPS53-204ENST00000437048 LEFTY1O75610 366 aa6.59□□□□□ -1.35
VPS53-204ENST00000437048 ZFAND5O76080 213 aa6.59□□□□□ -1.35
VPS53-204ENST00000437048 FCGR2CP31995 323 aa6.59□□□□□ -1.35
VPS53-204ENST00000437048 ZNF626Q68DY1 528 aa6.59□□□□□ -1.35
VPS53-204ENST00000437048 TMEM104Q8NE00 496 aa6.59□□□□□ -1.35
VPS53-204ENST00000437048 PTDSS2Q9BVG9 487 aa6.59□□□□□ -1.35
VPS53-204ENST00000437048 VN1R3Q9BXE9 311 aa6.59□□□□□ -1.35
VPS53-204ENST00000437048 SLC23A2Q9UGH3 650 aa6.59□□□□□ -1.35
VPS53-204ENST00000437048 MYO16Q9Y6X6 1858 aa6.59□□□□□ -1.35
VPS53-204ENST00000437048 OR6C76A6NM76 312 aa6.59□□□□□ -1.35
VPS53-204ENST00000437048 SLC17A3O00476 420 aa6.59□□□□□ -1.35
VPS53-204ENST00000437048 SFTA3P0C7M3 94 aa6.59□□□□□ -1.35
VPS53-204ENST00000437048 GOT1L1Q8NHS2 421 aaPredicted RBP6.59□□□□□ -1.35
VPS53-204ENST00000437048 GINS3Q9BRX5 216 aa6.59□□□□□ -1.35
VPS53-204ENST00000437048 TOPAZ1Q8N9V7 1692 aa6.59□□□□□ -1.35
VPS53-204ENST00000437048 TCAPO15273 167 aa6.59□□□□□ -1.35
VPS53-204ENST00000437048 ERHP84090 104 aaKnown RBP6.59□□□□□ -1.35
VPS53-204ENST00000437048 PIGFQ07326 219 aa6.59□□□□□ -1.35
VPS53-204ENST00000437048 ZNF787Q6DD87 383 aa6.59□□□□□ -1.35
VPS53-204ENST00000437048 GABRG1Q8N1C3 465 aa6.59□□□□□ -1.35
VPS53-204ENST00000437048 ARRDC3Q96B67 414 aa6.59□□□□□ -1.35
VPS53-204ENST00000437048 SGCZQ96LD1 299 aa6.59□□□□□ -1.35
VPS53-204ENST00000437048 S1PR3Q99500 378 aa6.59□□□□□ -1.35
VPS53-204ENST00000437048 GPR62Q9BZJ7 368 aa6.59□□□□□ -1.35
VPS53-204ENST00000437048 PARP11Q9NR21 331 aa6.59□□□□□ -1.35
VPS53-204ENST00000437048 TMEM167BQ9NRX6 74 aa6.59□□□□□ -1.35
VPS53-204ENST00000437048 NAT8Q9UHE5 227 aa6.59□□□□□ -1.35
VPS53-204ENST00000437048 ANKRD34CP0C6C1 535 aa6.59□□□□□ -1.35
VPS53-204ENST00000437048 TCL1AP56279 114 aa6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms