RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 LOC100506127A0A0U1RQW1 187 aa15.03■□□□□ -0
CCDC28B-202ENST00000421922 A0A1W2PPZ6 126 aa15.03■□□□□ -0
CCDC28B-202ENST00000421922 PRR32B1ATL7 298 aa15.03■□□□□ -0
CCDC28B-202ENST00000421922 RER1O15258 196 aa15.03■□□□□ -0
CCDC28B-202ENST00000421922 AIREO43918 545 aa15.03■□□□□ -0
CCDC28B-202ENST00000421922 DOK2O60496 412 aa15.03■□□□□ -0
CCDC28B-202ENST00000421922 TNFSF13O75888 250 aa15.03■□□□□ -0
CCDC28B-202ENST00000421922 LALBAP00709 142 aa15.03■□□□□ -0
CCDC28B-202ENST00000421922 GADD45AP24522 165 aa15.03■□□□□ -0
CCDC28B-202ENST00000421922 GABRA5P31644 462 aa15.03■□□□□ -0
CCDC28B-202ENST00000421922 OPRM1P35372 400 aa15.03■□□□□ -0
CCDC28B-202ENST00000421922 TGFBR2P37173 567 aa15.03■□□□□ -0
CCDC28B-202ENST00000421922 TGM4P49221 684 aa15.03■□□□□ -0
CCDC28B-202ENST00000421922 SLC3A1Q07837 685 aa15.03■□□□□ -0
CCDC28B-202ENST00000421922 GPR50Q13585 617 aa15.03■□□□□ -0
CCDC28B-202ENST00000421922 CDK5R1Q15078 307 aa15.03■□□□□ -0
CCDC28B-202ENST00000421922 SSX1Q16384 188 aa15.03■□□□□ -0
CCDC28B-202ENST00000421922 ZNF684Q5T5D7 378 aa15.03■□□□□ -0
CCDC28B-202ENST00000421922 TMEM53Q6P2H8 277 aa15.03■□□□□ -0
CCDC28B-202ENST00000421922 ANKRD16Q6P6B7 361 aa15.03■□□□□ -0
CCDC28B-202ENST00000421922 BTLAQ7Z6A9 289 aa15.03■□□□□ -0
CCDC28B-202ENST00000421922 DPPA2Q7Z7J5 298 aa15.03■□□□□ -0
CCDC28B-202ENST00000421922 SYT9Q86SS6 491 aa15.03■□□□□ -0
CCDC28B-202ENST00000421922 ISOC1Q96CN7 298 aa15.03■□□□□ -0
CCDC28B-202ENST00000421922 BCL7BQ9BQE9 202 aa15.03■□□□□ -0
CCDC28B-202ENST00000421922 TMED9Q9BVK6 235 aa15.03■□□□□ -0
CCDC28B-202ENST00000421922 RBM38Q9H0Z9 239 aaKnown RBP15.03■□□□□ -0
CCDC28B-202ENST00000421922 PLSCR4Q9NRQ2 329 aa15.03■□□□□ -0
CCDC28B-202ENST00000421922 STUB1Q9UNE7 303 aa15.03■□□□□ -0
CCDC28B-202ENST00000421922 TIMM10BQ9Y5J6 103 aa15.03■□□□□ -0
CCDC28B-202ENST00000421922 MAST4O15021 2626 aa15.03■□□□□ -0
CCDC28B-202ENST00000421922 E9PI62 339 aa15.02■□□□□ -0
CCDC28B-202ENST00000421922 SGCEO43556 437 aa15.02■□□□□ -0
CCDC28B-202ENST00000421922 TOXO94900 526 aa15.02■□□□□ -0
CCDC28B-202ENST00000421922 ABHD16AO95870 558 aa15.02■□□□□ -0
CCDC28B-202ENST00000421922 CD8BP10966 210 aa15.02■□□□□ -0
CCDC28B-202ENST00000421922 CEACAM8P31997 349 aaPredicted RBP15.02■□□□□ -0
CCDC28B-202ENST00000421922 OPRL1P41146 370 aa15.02■□□□□ -0
CCDC28B-202ENST00000421922 GDI2P50395 445 aaKnown RBP15.02■□□□□ -0
CCDC28B-202ENST00000421922 UBE2NP61088 152 aaKnown RBP15.02■□□□□ -0
CCDC28B-202ENST00000421922 RAB35Q15286 201 aa15.02■□□□□ -0
CCDC28B-202ENST00000421922 TRAM1Q15629 374 aa15.02■□□□□ -0
CCDC28B-202ENST00000421922 ELFN2Q5R3F8 820 aa15.02■□□□□ -0
CCDC28B-202ENST00000421922 PCSK4Q6UW60 755 aa15.02■□□□□ -0
CCDC28B-202ENST00000421922 BEND4Q6ZU67 534 aa15.02■□□□□ -0
CCDC28B-202ENST00000421922 RHOUQ7L0Q8 258 aa15.02■□□□□ -0
CCDC28B-202ENST00000421922 SKA3Q8IX90 412 aa15.02■□□□□ -0
CCDC28B-202ENST00000421922 OR1K1Q8NGR3 316 aa15.02■□□□□ -0
CCDC28B-202ENST00000421922 STARD4Q96DR4 205 aa15.02■□□□□ -0
CCDC28B-202ENST00000421922 SMIM19Q96E16 107 aa15.02■□□□□ -0
CCDC28B-202ENST00000421922 FBXO17Q96EF6 278 aa15.02■□□□□ -0
CCDC28B-202ENST00000421922 ATF6BQ99941 703 aa15.02■□□□□ -0
CCDC28B-202ENST00000421922 CHCHD6Q9BRQ6 235 aa15.02■□□□□ -0
CCDC28B-202ENST00000421922 COMMD4Q9H0A8 199 aa15.02■□□□□ -0
CCDC28B-202ENST00000421922 HDHD2Q9H0R4 259 aa15.02■□□□□ -0
CCDC28B-202ENST00000421922 SSR3Q9UNL2 185 aa15.02■□□□□ -0
CCDC28B-202ENST00000421922 NCOA6Q14686 2063 aaPredicted RBP15.02□□□□□ -0.01
CCDC28B-202ENST00000421922 LOC110117498-PIK3R3F6TDL0 507 aa15.01□□□□□ -0.01
CCDC28B-202ENST00000421922 ZNF701M0R085 212 aaPredicted RBP15.01□□□□□ -0.01
CCDC28B-202ENST00000421922 UBL3O95164 117 aa15.01□□□□□ -0.01
CCDC28B-202ENST00000421922 GABARAPO95166 117 aa15.01□□□□□ -0.01
CCDC28B-202ENST00000421922 WNT11O96014 354 aa15.01□□□□□ -0.01
CCDC28B-202ENST00000421922 ITGA5P08648 1049 aa15.01□□□□□ -0.01
CCDC28B-202ENST00000421922 CD79AP11912 226 aa15.01□□□□□ -0.01
CCDC28B-202ENST00000421922 ZNF32P17041 273 aa15.01□□□□□ -0.01
CCDC28B-202ENST00000421922 CD53P19397 219 aa15.01□□□□□ -0.01
CCDC28B-202ENST00000421922 ECH1Q13011 328 aa15.01□□□□□ -0.01
CCDC28B-202ENST00000421922 ALKBH1Q13686 389 aaKnown RBP15.01□□□□□ -0.01
CCDC28B-202ENST00000421922 DOC2BQ14184 412 aa15.01□□□□□ -0.01
CCDC28B-202ENST00000421922 ZNF627Q7L945 461 aa15.01□□□□□ -0.01
CCDC28B-202ENST00000421922 ALDH16A1Q8IZ83 802 aa15.01□□□□□ -0.01
CCDC28B-202ENST00000421922 ZNF283Q8N7M2 679 aa15.01□□□□□ -0.01
CCDC28B-202ENST00000421922 NAXEQ8NCW5 288 aa15.01□□□□□ -0.01
CCDC28B-202ENST00000421922 TMEM203Q969S6 136 aa15.01□□□□□ -0.01
CCDC28B-202ENST00000421922 SPTSSAQ969W0 71 aa15.01□□□□□ -0.01
CCDC28B-202ENST00000421922 NAA50Q9GZZ1 169 aaKnown RBP15.01□□□□□ -0.01
CCDC28B-202ENST00000421922 OPN3Q9H1Y3 402 aaPredicted RBP15.01□□□□□ -0.01
CCDC28B-202ENST00000421922 PIGMQ9H3S5 423 aa15.01□□□□□ -0.01
CCDC28B-202ENST00000421922 ST6GALNAC2Q9UJ37 374 aa15.01□□□□□ -0.01
CCDC28B-202ENST00000421922 SLC5A6Q9Y289 635 aa15.01□□□□□ -0.01
CCDC28B-202ENST00000421922 R4GMQ9 66 aa15.01□□□□□ -0.01
CCDC28B-202ENST00000421922 SHANK1Q9Y566 2161 aa15.01□□□□□ -0.01
CCDC28B-202ENST00000421922 CYSRT1A8MQ03 144 aa15□□□□□ -0.01
CCDC28B-202ENST00000421922 E9PLN8 166 aa15□□□□□ -0.01
CCDC28B-202ENST00000421922 DVL2O14641 736 aa15□□□□□ -0.01
CCDC28B-202ENST00000421922 OGG1O15527 345 aa15□□□□□ -0.01
CCDC28B-202ENST00000421922 PLPP2O43688 288 aa15□□□□□ -0.01
CCDC28B-202ENST00000421922 GPRIN2O60269 458 aa15□□□□□ -0.01
CCDC28B-202ENST00000421922 RAD51DO75771 328 aa15□□□□□ -0.01
CCDC28B-202ENST00000421922 IL18BPO95998 194 aa15□□□□□ -0.01
CCDC28B-202ENST00000421922 SERPINA3P01011 423 aa15□□□□□ -0.01
CCDC28B-202ENST00000421922 APOC1P02654 83 aa15□□□□□ -0.01
CCDC28B-202ENST00000421922 HLA-DPB1P04440 258 aa15□□□□□ -0.01
CCDC28B-202ENST00000421922 NR4A1P22736 598 aa15□□□□□ -0.01
CCDC28B-202ENST00000421922 ARR3P36575 388 aa15□□□□□ -0.01
CCDC28B-202ENST00000421922 HTR5AP47898 357 aa15□□□□□ -0.01
CCDC28B-202ENST00000421922 FOXG1P55316 489 aaPredicted RBP15□□□□□ -0.01
CCDC28B-202ENST00000421922 LSM3P62310 102 aaKnown RBP15□□□□□ -0.01
CCDC28B-202ENST00000421922 RPS25P62851 125 aaKnown RBP15□□□□□ -0.01
CCDC28B-202ENST00000421922 FOXB2Q5VYV0 432 aa15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms