RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 GHRLQ9UBU3 117 aa7.46□□□□□ -1.22
USP54-203ENST00000418501 MRPS18BQ9Y676 258 aaKnown RBP7.46□□□□□ -1.22
USP54-203ENST00000418501 LOC107986453A0A1B0GWG9 222 aa7.46□□□□□ -1.22
USP54-203ENST00000418501 H0YC42 278 aa7.46□□□□□ -1.22
USP54-203ENST00000418501 HCKP08631 526 aa7.46□□□□□ -1.22
USP54-203ENST00000418501 CLEC2LP0C7M8 214 aa7.46□□□□□ -1.22
USP54-203ENST00000418501 EPXP11678 715 aa7.46□□□□□ -1.22
USP54-203ENST00000418501 CX3CR1P49238 355 aa7.46□□□□□ -1.22
USP54-203ENST00000418501 PRKXP51817 358 aa7.46□□□□□ -1.22
USP54-203ENST00000418501 SUCLG1P53597 346 aaKnown RBP7.46□□□□□ -1.22
USP54-203ENST00000418501 UBE2NP61088 152 aaKnown RBP7.46□□□□□ -1.22
USP54-203ENST00000418501 GPR176Q14439 515 aa7.46□□□□□ -1.22
USP54-203ENST00000418501 PCK2Q16822 640 aa7.46□□□□□ -1.22
USP54-203ENST00000418501 TMEM91Q6ZNR0 172 aa7.46□□□□□ -1.22
USP54-203ENST00000418501 LINC00346Q8IVM7 164 aa7.46□□□□□ -1.22
USP54-203ENST00000418501 ELMOD2Q8IZ81 293 aa7.46□□□□□ -1.22
USP54-203ENST00000418501 FOXB1Q99853 325 aa7.46□□□□□ -1.22
USP54-203ENST00000418501 CST11Q9H112 138 aa7.46□□□□□ -1.22
USP54-203ENST00000418501 DPAGT1Q9H3H5 408 aa7.46□□□□□ -1.22
USP54-203ENST00000418501 RNF167Q9H6Y7 350 aa7.46□□□□□ -1.22
USP54-203ENST00000418501 SLC22A13Q9Y226 551 aa7.46□□□□□ -1.22
USP54-203ENST00000418501 XRCC2O43543 280 aa7.45□□□□□ -1.22
USP54-203ENST00000418501 HPGDSO60760 199 aa7.45□□□□□ -1.22
USP54-203ENST00000418501 LALBAP00709 142 aa7.45□□□□□ -1.22
USP54-203ENST00000418501 MAS1P04201 325 aa7.45□□□□□ -1.22
USP54-203ENST00000418501 FSTP19883 344 aa7.45□□□□□ -1.22
USP54-203ENST00000418501 AZGP1P25311 298 aaKnown RBP7.45□□□□□ -1.22
USP54-203ENST00000418501 APLNRP35414 380 aa7.45□□□□□ -1.22
USP54-203ENST00000418501 PER3P56645 1201 aa7.45□□□□□ -1.22
USP54-203ENST00000418501 SSBP1Q04837 148 aaKnown RBP7.45□□□□□ -1.22
USP54-203ENST00000418501 RBPJQ06330 500 aa7.45□□□□□ -1.22
USP54-203ENST00000418501 SOWAHCQ53LP3 525 aaPredicted RBP7.45□□□□□ -1.22
USP54-203ENST00000418501 WDR38Q5JTN6 314 aa7.45□□□□□ -1.22
USP54-203ENST00000418501 ABLIM2Q6H8Q1 611 aa7.45□□□□□ -1.22
USP54-203ENST00000418501 STAC2Q6ZMT1 411 aa7.45□□□□□ -1.22
USP54-203ENST00000418501 DCDC5Q6ZRR9 648 aa7.45□□□□□ -1.22
USP54-203ENST00000418501 PLEKHB1Q9UF11 243 aaPredicted RBP7.45□□□□□ -1.22
USP54-203ENST00000418501 CYB5R1Q9UHQ9 305 aa7.45□□□□□ -1.22
USP54-203ENST00000418501 ASCC3Q8N3C0 2202 aaKnown RBP7.45□□□□□ -1.22
USP54-203ENST00000418501 E9PI62 339 aa7.45□□□□□ -1.22
USP54-203ENST00000418501 UPK3AO75631 287 aa7.45□□□□□ -1.22
USP54-203ENST00000418501 HLA-DOBP13765 273 aa7.45□□□□□ -1.22
USP54-203ENST00000418501 MAP2K3P46734 347 aa7.45□□□□□ -1.22
USP54-203ENST00000418501 ACTBP60709 375 aa7.45□□□□□ -1.22
USP54-203ENST00000418501 ACTG1P63261 375 aa7.45□□□□□ -1.22
USP54-203ENST00000418501 SSX6Q7RTT6 188 aa7.45□□□□□ -1.22
USP54-203ENST00000418501 LAX1Q8IWV1 398 aa7.45□□□□□ -1.22
USP54-203ENST00000418501 PP6455Q8WZ26 134 aa7.45□□□□□ -1.22
USP54-203ENST00000418501 PSMF1Q92530 271 aa7.45□□□□□ -1.22
USP54-203ENST00000418501 UBL7Q96S82 380 aaPredicted RBP7.45□□□□□ -1.22
USP54-203ENST00000418501 ZNF649Q9BS31 505 aa7.45□□□□□ -1.22
USP54-203ENST00000418501 CYSLTR2Q9NS75 346 aa7.45□□□□□ -1.22
USP54-203ENST00000418501 ZMIZ1Q9ULJ6 1067 aa7.45□□□□□ -1.22
USP54-203ENST00000418501 FLVCR1Q9Y5Y0 555 aa7.45□□□□□ -1.22
USP54-203ENST00000418501 LOC100289279A0A1B0GTE1 492 aa7.45□□□□□ -1.22
USP54-203ENST00000418501 LRRC3CA6NJW4 275 aa7.45□□□□□ -1.22
USP54-203ENST00000418501 TERTO14746 1132 aaKnown RBP7.45□□□□□ -1.22
USP54-203ENST00000418501 NEURL1O76050 574 aa7.45□□□□□ -1.22
USP54-203ENST00000418501 HTR2CP28335 458 aa7.45□□□□□ -1.22
USP54-203ENST00000418501 CLDN6P56747 220 aa7.45□□□□□ -1.22
USP54-203ENST00000418501 H3F3AP84243 136 aa7.45□□□□□ -1.22
USP54-203ENST00000418501 GALK2Q01415 458 aa7.45□□□□□ -1.22
USP54-203ENST00000418501 FMODQ06828 376 aa7.45□□□□□ -1.22
USP54-203ENST00000418501 PNPLA5Q7Z6Z6 429 aaPredicted RBP7.45□□□□□ -1.22
USP54-203ENST00000418501 VASH2Q86V25 355 aa7.45□□□□□ -1.22
USP54-203ENST00000418501 UQCC2Q9BRT2 126 aa7.45□□□□□ -1.22
USP54-203ENST00000418501 EMC7Q9NPA0 242 aa7.45□□□□□ -1.22
USP54-203ENST00000418501 B3GAT1Q9P2W7 334 aa7.45□□□□□ -1.22
USP54-203ENST00000418501 ADAMTS9Q9P2N4 1935 aa7.45□□□□□ -1.22
USP54-203ENST00000418501 A0A1W2PPK0 400 aa7.45□□□□□ -1.22
USP54-203ENST00000418501 KLK10O43240 276 aa7.45□□□□□ -1.22
USP54-203ENST00000418501 DOK2O60496 412 aa7.45□□□□□ -1.22
USP54-203ENST00000418501 SNAPC5O75971 98 aa7.45□□□□□ -1.22
USP54-203ENST00000418501 KDM4BO94953 1096 aa7.45□□□□□ -1.22
USP54-203ENST00000418501 HOXB1P14653 301 aaPredicted RBP7.45□□□□□ -1.22
USP54-203ENST00000418501 GABRA1P14867 456 aa7.45□□□□□ -1.22
USP54-203ENST00000418501 THBS4P35443 961 aa7.45□□□□□ -1.22
USP54-203ENST00000418501 CD79BP40259 229 aa7.45□□□□□ -1.22
USP54-203ENST00000418501 ASAH1Q13510 395 aa7.45□□□□□ -1.22
USP54-203ENST00000418501 MDS2Q8NDY4 140 aa7.45□□□□□ -1.22
USP54-203ENST00000418501 MRPL22Q9NWU5 206 aaKnown RBP7.45□□□□□ -1.22
USP54-203ENST00000418501 FRRS1LQ9P0K9 344 aa7.45□□□□□ -1.22
USP54-203ENST00000418501 NOP16Q9Y3C1 178 aaKnown RBP7.45□□□□□ -1.22
USP54-203ENST00000418501 LCATP04180 440 aa7.44□□□□□ -1.22
USP54-203ENST00000418501 ARSBP15848 533 aa7.44□□□□□ -1.22
USP54-203ENST00000418501 ZNF708P17019 499 aa7.44□□□□□ -1.22
USP54-203ENST00000418501 IL11P20809 199 aa7.44□□□□□ -1.22
USP54-203ENST00000418501 MAGEA5P43359 124 aa7.44□□□□□ -1.22
USP54-203ENST00000418501 HTR5AP47898 357 aa7.44□□□□□ -1.22
USP54-203ENST00000418501 RIPPLY1Q0D2K3 151 aa7.44□□□□□ -1.22
USP54-203ENST00000418501 ODF4Q2M2E3 257 aa7.44□□□□□ -1.22
USP54-203ENST00000418501 ZNF684Q5T5D7 378 aa7.44□□□□□ -1.22
USP54-203ENST00000418501 FAM180AQ6UWF9 173 aa7.44□□□□□ -1.22
USP54-203ENST00000418501 FAM57BQ71RH2 274 aa7.44□□□□□ -1.22
USP54-203ENST00000418501 LYSMD2Q8IV50 215 aa7.44□□□□□ -1.22
USP54-203ENST00000418501 ROBO4Q8WZ75 1007 aa7.44□□□□□ -1.22
USP54-203ENST00000418501 ZFP3Q96NJ6 502 aa7.44□□□□□ -1.22
USP54-203ENST00000418501 ARPC5LQ9BPX5 153 aa7.44□□□□□ -1.22
USP54-203ENST00000418501 ZCCHC4Q9H5U6 513 aa7.44□□□□□ -1.22
USP54-203ENST00000418501 GPN1Q9HCN4 374 aaPredicted RBP7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms