RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 COMPP49747 757 aaPredicted RBP9.74□□□□□ -0.85
USP4-204ENST00000416417 SLC3A1Q07837 685 aa9.74□□□□□ -0.85
USP4-204ENST00000416417 SCRN3Q0VDG4 424 aa9.74□□□□□ -0.85
USP4-204ENST00000416417 CCDC92Q53HC0 331 aaPredicted RBP9.74□□□□□ -0.85
USP4-204ENST00000416417 AWAT1Q58HT5 328 aa9.74□□□□□ -0.85
USP4-204ENST00000416417 KLF17Q5JT82 389 aaPredicted RBP9.74□□□□□ -0.85
USP4-204ENST00000416417 ARL9Q6T311 187 aa9.74□□□□□ -0.85
USP4-204ENST00000416417 PTCHD4Q6ZW05 846 aa9.74□□□□□ -0.85
USP4-204ENST00000416417 TREML1Q86YW5 311 aa9.74□□□□□ -0.85
USP4-204ENST00000416417 ATG16L2Q8NAA4 619 aa9.74□□□□□ -0.85
USP4-204ENST00000416417 OR10AD1Q8NGE0 317 aa9.74□□□□□ -0.85
USP4-204ENST00000416417 SLC7A13Q8TCU3 470 aa9.74□□□□□ -0.85
USP4-204ENST00000416417 FAM162AQ96A26 154 aa9.74□□□□□ -0.85
USP4-204ENST00000416417 TSSK2Q96PF2 358 aa9.74□□□□□ -0.85
USP4-204ENST00000416417 OR2V2Q96R30 315 aa9.74□□□□□ -0.85
USP4-204ENST00000416417 SIGLEC11Q96RL6 698 aa9.74□□□□□ -0.85
USP4-204ENST00000416417 DIRC2Q96SL1 478 aa9.74□□□□□ -0.85
USP4-204ENST00000416417 WDR76Q9H967 626 aa9.74□□□□□ -0.85
USP4-204ENST00000416417 NMNAT1Q9HAN9 279 aaPredicted RBP9.74□□□□□ -0.85
USP4-204ENST00000416417 PCDHGB1Q9Y5G3 927 aa9.74□□□□□ -0.85
USP4-204ENST00000416417 IER3IP1Q9Y5U9 82 aa9.74□□□□□ -0.85
USP4-204ENST00000416417 TANC2Q9HCD6 1990 aa9.74□□□□□ -0.85
USP4-204ENST00000416417 H3BSA7 217 aa9.73□□□□□ -0.85
USP4-204ENST00000416417 WIPF1O43516 503 aa9.73□□□□□ -0.85
USP4-204ENST00000416417 FOXH1O75593 365 aa9.73□□□□□ -0.85
USP4-204ENST00000416417 CYB5R3P00387 301 aaPredicted RBP9.73□□□□□ -0.85
USP4-204ENST00000416417 SELEP16581 610 aa9.73□□□□□ -0.85
USP4-204ENST00000416417 KITLGP21583 273 aa9.73□□□□□ -0.85
USP4-204ENST00000416417 FXYD6P3P58550 94 aa9.73□□□□□ -0.85
USP4-204ENST00000416417 BTG1P62324 171 aa9.73□□□□□ -0.85
USP4-204ENST00000416417 SEC23BQ15437 767 aa9.73□□□□□ -0.85
USP4-204ENST00000416417 ZMAT1Q5H9K5 638 aa9.73□□□□□ -0.85
USP4-204ENST00000416417 ARMCX4Q5H9R4 360 aa9.73□□□□□ -0.85
USP4-204ENST00000416417 FGD3Q5JSP0 725 aa9.73□□□□□ -0.85
USP4-204ENST00000416417 FAM201AQ5SY85 155 aa9.73□□□□□ -0.85
USP4-204ENST00000416417 OR2T2Q6IF00 324 aa9.73□□□□□ -0.85
USP4-204ENST00000416417 CORO6Q6QEF8 472 aa9.73□□□□□ -0.85
USP4-204ENST00000416417 TMPRSS11FQ6ZWK6 438 aa9.73□□□□□ -0.85
USP4-204ENST00000416417 RRM2BQ7LG56 351 aa9.73□□□□□ -0.85
USP4-204ENST00000416417 SYT9Q86SS6 491 aa9.73□□□□□ -0.85
USP4-204ENST00000416417 RNF113BQ8IZP6 322 aaKnown RBP9.73□□□□□ -0.85
USP4-204ENST00000416417 TEX29Q8N6K0 151 aa9.73□□□□□ -0.85
USP4-204ENST00000416417 ZNF283Q8N7M2 679 aa9.73□□□□□ -0.85
USP4-204ENST00000416417 FAM86B1Q8N7N1 296 aa9.73□□□□□ -0.85
USP4-204ENST00000416417 NPEPL1Q8NDH3 523 aa9.73□□□□□ -0.85
USP4-204ENST00000416417 BHLHE23Q8NDY6 225 aa9.73□□□□□ -0.85
USP4-204ENST00000416417 HAVCR1Q96D42 359 aa9.73□□□□□ -0.85
USP4-204ENST00000416417 SAMD8Q96LT4 415 aa9.73□□□□□ -0.85
USP4-204ENST00000416417 ZNF48Q96MX3 618 aaPredicted RBP9.73□□□□□ -0.85
USP4-204ENST00000416417 JMJD8Q96S16 334 aa9.73□□□□□ -0.85
USP4-204ENST00000416417 GPA33Q99795 319 aa9.73□□□□□ -0.85
USP4-204ENST00000416417 NUAK2Q9H093 628 aa9.73□□□□□ -0.85
USP4-204ENST00000416417 PATZ1Q9HBE1 687 aaKnown RBP9.73□□□□□ -0.85
USP4-204ENST00000416417 TBCCD1Q9NVR7 557 aa9.73□□□□□ -0.85
USP4-204ENST00000416417 PPP1R3CQ9UQK1 317 aa9.73□□□□□ -0.85
USP4-204ENST00000416417 SIGLEC7Q9Y286 467 aa9.73□□□□□ -0.85
USP4-204ENST00000416417 AUP1Q9Y679 476 aa9.73□□□□□ -0.85
USP4-204ENST00000416417 ENPP4Q9Y6X5 453 aa9.73□□□□□ -0.85
USP4-204ENST00000416417 V9GYQ6 96 aa9.73□□□□□ -0.85
USP4-204ENST00000416417 DYSFO75923 2080 aa9.73□□□□□ -0.85
USP4-204ENST00000416417 TRBV4-1A0A0J9YWV2 114 aa9.72□□□□□ -0.85
USP4-204ENST00000416417 HTR3EA5X5Y0 456 aa9.72□□□□□ -0.85
USP4-204ENST00000416417 OR6C6A6NF89 314 aa9.72□□□□□ -0.85
USP4-204ENST00000416417 DCTN6O00399 190 aa9.72□□□□□ -0.85
USP4-204ENST00000416417 PTP4A3O75365 173 aa9.72□□□□□ -0.85
USP4-204ENST00000416417 KHDRBS3O75525 346 aaKnown RBP9.72□□□□□ -0.85
USP4-204ENST00000416417 COX5BP10606 129 aa9.72□□□□□ -0.85
USP4-204ENST00000416417 TNFSF4P23510 183 aa9.72□□□□□ -0.85
USP4-204ENST00000416417 GATA3P23771 443 aa9.72□□□□□ -0.85
USP4-204ENST00000416417 FPR2P25090 351 aa9.72□□□□□ -0.85
USP4-204ENST00000416417 CDKN2AP42771 156 aaKnown RBP9.72□□□□□ -0.85
USP4-204ENST00000416417 SLC6A9P48067 706 aa9.72□□□□□ -0.85
USP4-204ENST00000416417 HOXA4Q00056 320 aaPredicted RBP9.72□□□□□ -0.85
USP4-204ENST00000416417 ZNF154Q13106 437 aa9.72□□□□□ -0.85
USP4-204ENST00000416417 AQP6Q13520 282 aa9.72□□□□□ -0.85
USP4-204ENST00000416417 ZER1Q7Z7L7 766 aa9.72□□□□□ -0.85
USP4-204ENST00000416417 LRRC28Q86X40 367 aaPredicted RBP9.72□□□□□ -0.85
USP4-204ENST00000416417 GLB1L2Q8IW92 636 aa9.72□□□□□ -0.85
USP4-204ENST00000416417 KLHL36Q8N4N3 616 aa9.72□□□□□ -0.85
USP4-204ENST00000416417 OR52J3Q8NH60 311 aa9.72□□□□□ -0.85
USP4-204ENST00000416417 OR1F12Q8NHA8 337 aa9.72□□□□□ -0.85
USP4-204ENST00000416417 RP9Q8TA86 221 aaKnown RBP9.72□□□□□ -0.85
USP4-204ENST00000416417 RSRC1Q96IZ7 334 aaKnown RBP9.72□□□□□ -0.85
USP4-204ENST00000416417 ZNF446Q9NWS9 450 aa9.72□□□□□ -0.85
USP4-204ENST00000416417 CGGBP1Q9UFW8 167 aaPredicted RBP9.72□□□□□ -0.85
USP4-204ENST00000416417 POLR1DQ9Y2S0 133 aa9.72□□□□□ -0.85
USP4-204ENST00000416417 DNAJC9-AS1A6NH13 148 aa9.72□□□□□ -0.85
USP4-204ENST00000416417 CEACAM18A8MTB9 384 aa9.72□□□□□ -0.85
USP4-204ENST00000416417 F5H0A9 414 aaPredicted RBP9.72□□□□□ -0.85
USP4-204ENST00000416417 TMEM178BH3BS89 294 aa9.72□□□□□ -0.85
USP4-204ENST00000416417 NDUFB2O95178 105 aa9.72□□□□□ -0.85
USP4-204ENST00000416417 PPP1R3DO95685 299 aa9.72□□□□□ -0.85
USP4-204ENST00000416417 H1F0P07305 194 aaKnown RBP9.72□□□□□ -0.85
USP4-204ENST00000416417 ZNF12P17014 697 aa9.72□□□□□ -0.85
USP4-204ENST00000416417 SDHAP31040 664 aa9.72□□□□□ -0.85
USP4-204ENST00000416417 OMPP47874 163 aa9.72□□□□□ -0.85
USP4-204ENST00000416417 LIMS1P48059 325 aa9.72□□□□□ -0.85
USP4-204ENST00000416417 NUDT2P50583 147 aa9.72□□□□□ -0.85
USP4-204ENST00000416417 MMP16P51512 607 aa9.72□□□□□ -0.85
USP4-204ENST00000416417 ANKDD1AQ495B1 522 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms