RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 TBL1XR1Q9BZK7 514 aa8.46□□□□□ -1.05
COL28A1-201ENST00000399429 WDR76Q9H967 626 aa8.46□□□□□ -1.05
COL28A1-201ENST00000399429 NPIPA1Q9UND3 350 aa8.46□□□□□ -1.05
COL28A1-201ENST00000399429 H3BNC9 293 aa8.46□□□□□ -1.06
COL28A1-201ENST00000399429 NID1P14543 1247 aa8.46□□□□□ -1.06
COL28A1-201ENST00000399429 ST6GAL1P15907 406 aa8.46□□□□□ -1.06
COL28A1-201ENST00000399429 HOXB9P17482 250 aaPredicted RBP8.46□□□□□ -1.06
COL28A1-201ENST00000399429 NDUFS1P28331 727 aa8.46□□□□□ -1.06
COL28A1-201ENST00000399429 ACTR1BP42025 376 aa8.46□□□□□ -1.06
COL28A1-201ENST00000399429 ZNF41P51814 821 aaPredicted RBP8.46□□□□□ -1.06
COL28A1-201ENST00000399429 TAS2R60P59551 318 aa8.46□□□□□ -1.06
COL28A1-201ENST00000399429 ACTR1AP61163 376 aa8.46□□□□□ -1.06
COL28A1-201ENST00000399429 PSRC1Q6PGN9 363 aaPredicted RBP8.46□□□□□ -1.06
COL28A1-201ENST00000399429 DHRS11Q6UWP2 260 aa8.46□□□□□ -1.06
COL28A1-201ENST00000399429 SLC39A5Q6ZMH5 540 aa8.46□□□□□ -1.06
COL28A1-201ENST00000399429 NPAS4Q8IUM7 802 aa8.46□□□□□ -1.06
COL28A1-201ENST00000399429 C17orf78Q8N4C9 275 aa8.46□□□□□ -1.06
COL28A1-201ENST00000399429 SAMD10Q9BYL1 202 aa8.46□□□□□ -1.06
COL28A1-201ENST00000399429 ZNF346Q9UL40 294 aaKnown RBP8.46□□□□□ -1.06
COL28A1-201ENST00000399429 PSME4Q14997 1843 aa8.46□□□□□ -1.06
COL28A1-201ENST00000399429 PPP5D1E7EU14 171 aa8.46□□□□□ -1.06
COL28A1-201ENST00000399429 M0R143 59 aa8.46□□□□□ -1.06
COL28A1-201ENST00000399429 GPANK1O95872 356 aa8.46□□□□□ -1.06
COL28A1-201ENST00000399429 AK1P00568 194 aa8.46□□□□□ -1.06
COL28A1-201ENST00000399429 RAB4AP20338 218 aa8.46□□□□□ -1.06
COL28A1-201ENST00000399429 DPP4P27487 766 aa8.46□□□□□ -1.06
COL28A1-201ENST00000399429 IL12BP29460 328 aa8.46□□□□□ -1.06
COL28A1-201ENST00000399429 ASCL1P50553 236 aa8.46□□□□□ -1.06
COL28A1-201ENST00000399429 DNM1P34Q6PK57 102 aa8.46□□□□□ -1.06
COL28A1-201ENST00000399429 TMEM64Q6YI46 380 aa8.46□□□□□ -1.06
COL28A1-201ENST00000399429 DPY19L2P2Q6ZN68 376 aa8.46□□□□□ -1.06
COL28A1-201ENST00000399429 REC114Q7Z4M0 266 aa8.46□□□□□ -1.06
COL28A1-201ENST00000399429 MARCH3Q86UD3 253 aa8.46□□□□□ -1.06
COL28A1-201ENST00000399429 COMMD1Q8N668 190 aa8.46□□□□□ -1.06
COL28A1-201ENST00000399429 OR8U1Q8NH10 309 aa8.46□□□□□ -1.06
COL28A1-201ENST00000399429 OR14C36Q8NHC7 312 aa8.46□□□□□ -1.06
COL28A1-201ENST00000399429 SOCS4Q8WXH5 440 aa8.46□□□□□ -1.06
COL28A1-201ENST00000399429 ZNF426Q9BUY5 554 aa8.46□□□□□ -1.06
COL28A1-201ENST00000399429 CWH43Q9H720 699 aa8.46□□□□□ -1.06
COL28A1-201ENST00000399429 SOHLH2Q9NX45 425 aa8.46□□□□□ -1.06
COL28A1-201ENST00000399429 ADAM29Q9UKF5 820 aa8.46□□□□□ -1.06
COL28A1-201ENST00000399429 A6NIZ1 184 aa8.45□□□□□ -1.06
COL28A1-201ENST00000399429 ZNF727A8MUV8 499 aa8.45□□□□□ -1.06
COL28A1-201ENST00000399429 TMEM229AB2RXF0 380 aa8.45□□□□□ -1.06
COL28A1-201ENST00000399429 GPX4P36969 197 aaPredicted RBP8.45□□□□□ -1.06
COL28A1-201ENST00000399429 RAP1BP61224 184 aa8.45□□□□□ -1.06
COL28A1-201ENST00000399429 C12orf40Q86WS4 652 aa8.45□□□□□ -1.06
COL28A1-201ENST00000399429 FGGYQ96C11 551 aa8.45□□□□□ -1.06
COL28A1-201ENST00000399429 TRMT2BQ96GJ1 504 aaKnown RBP8.45□□□□□ -1.06
COL28A1-201ENST00000399429 PGLYRP3Q96LB9 341 aa8.45□□□□□ -1.06
COL28A1-201ENST00000399429 C2orf50Q96LR7 162 aa8.45□□□□□ -1.06
COL28A1-201ENST00000399429 DGAT2Q96PD7 388 aa8.45□□□□□ -1.06
COL28A1-201ENST00000399429 TMEM106CQ9BVX2 250 aa8.45□□□□□ -1.06
COL28A1-201ENST00000399429 SGPP1Q9BX95 441 aa8.45□□□□□ -1.06
COL28A1-201ENST00000399429 BANF2Q9H503 90 aa8.45□□□□□ -1.06
COL28A1-201ENST00000399429 SLC2A4RGQ9NR83 387 aa8.45□□□□□ -1.06
COL28A1-201ENST00000399429 TM7SF3Q9NS93 570 aa8.45□□□□□ -1.06
COL28A1-201ENST00000399429 ACAD8Q9UKU7 415 aa8.45□□□□□ -1.06
COL28A1-201ENST00000399429 VEGFDO43915 354 aa8.45□□□□□ -1.06
COL28A1-201ENST00000399429 CST4P01036 141 aa8.45□□□□□ -1.06
COL28A1-201ENST00000399429 C8AP07357 584 aa8.45□□□□□ -1.06
COL28A1-201ENST00000399429 MOGAT2Q3SYC2 334 aa8.45□□□□□ -1.06
COL28A1-201ENST00000399429 LFNGQ8NES3 379 aa8.45□□□□□ -1.06
COL28A1-201ENST00000399429 RSC1A1Q92681 617 aa8.45□□□□□ -1.06
COL28A1-201ENST00000399429 ARHGDIGQ99819 225 aa8.45□□□□□ -1.06
COL28A1-201ENST00000399429 NMNAT2Q9BZQ4 307 aa8.45□□□□□ -1.06
COL28A1-201ENST00000399429 GOLT1BQ9Y3E0 138 aa8.45□□□□□ -1.06
COL28A1-201ENST00000399429 INSL5Q9Y5Q6 135 aa8.45□□□□□ -1.06
COL28A1-201ENST00000399429 SERTM1A2A2V5 107 aa8.45□□□□□ -1.06
COL28A1-201ENST00000399429 RAB27BO00194 218 aa8.45□□□□□ -1.06
COL28A1-201ENST00000399429 P2RY10O00398 339 aa8.45□□□□□ -1.06
COL28A1-201ENST00000399429 OGG1O15527 345 aa8.45□□□□□ -1.06
COL28A1-201ENST00000399429 HEXAP06865 529 aa8.45□□□□□ -1.06
COL28A1-201ENST00000399429 CSNK1G2P78368 415 aa8.45□□□□□ -1.06
COL28A1-201ENST00000399429 H3F3AP84243 136 aa8.45□□□□□ -1.06
COL28A1-201ENST00000399429 CDK3Q00526 305 aa8.45□□□□□ -1.06
COL28A1-201ENST00000399429 IKZF1Q13422 519 aa8.45□□□□□ -1.06
COL28A1-201ENST00000399429 PRSS53Q2L4Q9 553 aa8.45□□□□□ -1.06
COL28A1-201ENST00000399429 TMEM128Q5BJH2 165 aa8.45□□□□□ -1.06
COL28A1-201ENST00000399429 ZNF429Q86V71 674 aa8.45□□□□□ -1.06
COL28A1-201ENST00000399429 ANGPTL5Q86XS5 388 aa8.45□□□□□ -1.06
COL28A1-201ENST00000399429 TMEM37Q8WXS4 190 aa8.45□□□□□ -1.06
COL28A1-201ENST00000399429 CCDC74AQ96AQ1 378 aa8.45□□□□□ -1.06
COL28A1-201ENST00000399429 CCDC74BQ96LY2 380 aa8.45□□□□□ -1.06
COL28A1-201ENST00000399429 DCBLD2Q96PD2 775 aa8.45□□□□□ -1.06
COL28A1-201ENST00000399429 NRTNQ99748 197 aa8.45□□□□□ -1.06
COL28A1-201ENST00000399429 CPEB1Q9BZB8 566 aaKnown RBP8.45□□□□□ -1.06
COL28A1-201ENST00000399429 ZCCHC4Q9H5U6 513 aa8.45□□□□□ -1.06
COL28A1-201ENST00000399429 SIRT7Q9NRC8 400 aa8.45□□□□□ -1.06
COL28A1-201ENST00000399429 PNO1Q9NRX1 252 aaKnown RBP8.45□□□□□ -1.06
COL28A1-201ENST00000399429 C19orf12Q9NSK7 152 aa8.45□□□□□ -1.06
COL28A1-201ENST00000399429 AK3Q9UIJ7 227 aa8.45□□□□□ -1.06
COL28A1-201ENST00000399429 TRAV8-7A0A075B6U6 113 aa8.44□□□□□ -1.06
COL28A1-201ENST00000399429 A0A0G2JK05 382 aa8.44□□□□□ -1.06
COL28A1-201ENST00000399429 MEX3AA1L020 520 aaKnown RBP8.44□□□□□ -1.06
COL28A1-201ENST00000399429 K7ESM1 405 aa8.44□□□□□ -1.06
COL28A1-201ENST00000399429 SLC17A2O00624 439 aa8.44□□□□□ -1.06
COL28A1-201ENST00000399429 GEMIN2O14893 280 aaKnown RBP8.44□□□□□ -1.06
COL28A1-201ENST00000399429 RNGTTO60942 597 aaKnown RBP8.44□□□□□ -1.06
COL28A1-201ENST00000399429 IFNA1P01562 189 aa8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms