RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 HS3ST1O14792 307 aa6.05□□□□□ -1.44
LIMA1-202ENST00000394943 OGG1O15527 345 aa6.05□□□□□ -1.44
LIMA1-202ENST00000394943 IGHV3-13P01766 116 aa6.05□□□□□ -1.44
LIMA1-202ENST00000394943 APOC1P02654 83 aa6.05□□□□□ -1.44
LIMA1-202ENST00000394943 B4GALT1P15291 398 aa6.05□□□□□ -1.44
LIMA1-202ENST00000394943 GPR50Q13585 617 aa6.05□□□□□ -1.44
LIMA1-202ENST00000394943 C6orf141Q5SZD1 244 aa6.05□□□□□ -1.44
LIMA1-202ENST00000394943 TMEM42Q69YG0 159 aa6.05□□□□□ -1.44
LIMA1-202ENST00000394943 TMEM108Q6UXF1 575 aa6.05□□□□□ -1.44
LIMA1-202ENST00000394943 B3GLCTQ6Y288 498 aa6.05□□□□□ -1.44
LIMA1-202ENST00000394943 C8orf59Q8N0T1 100 aaPredicted RBP6.05□□□□□ -1.44
LIMA1-202ENST00000394943 OR52I1Q8NGK6 324 aa6.05□□□□□ -1.44
LIMA1-202ENST00000394943 RNF217Q8TC41 542 aa6.05□□□□□ -1.44
LIMA1-202ENST00000394943 TMEM171Q8WVE6 324 aa6.05□□□□□ -1.44
LIMA1-202ENST00000394943 MARS2Q96GW9 593 aaKnown RBP6.05□□□□□ -1.44
LIMA1-202ENST00000394943 TSSK2Q96PF2 358 aa6.05□□□□□ -1.44
LIMA1-202ENST00000394943 IL4I1Q96RQ9 567 aa6.05□□□□□ -1.44
LIMA1-202ENST00000394943 DHRS9Q9BPW9 319 aa6.05□□□□□ -1.44
LIMA1-202ENST00000394943 TRAF4Q9BUZ4 470 aaPredicted RBP6.05□□□□□ -1.44
LIMA1-202ENST00000394943 TLNRD1Q9H1K6 362 aa6.05□□□□□ -1.44
LIMA1-202ENST00000394943 G6PC2Q9NQR9 355 aa6.05□□□□□ -1.44
LIMA1-202ENST00000394943 COPS3Q9UNS2 423 aa6.05□□□□□ -1.44
LIMA1-202ENST00000394943 KLHDC2Q9Y2U9 406 aa6.05□□□□□ -1.44
LIMA1-202ENST00000394943 V9GYS6 101 aa6.05□□□□□ -1.44
LIMA1-202ENST00000394943 DOPEY1Q5JWR5 2465 aa6.05□□□□□ -1.44
LIMA1-202ENST00000394943 EFCAB10A6NFE3 127 aa6.05□□□□□ -1.44
LIMA1-202ENST00000394943 EEF1E1-BLOC1S5C9J1V9 151 aa6.05□□□□□ -1.44
LIMA1-202ENST00000394943 H7C1C5 153 aa6.05□□□□□ -1.44
LIMA1-202ENST00000394943 EEF1E1O43324 174 aaKnown RBP6.05□□□□□ -1.44
LIMA1-202ENST00000394943 TLX2O43763 284 aaPredicted RBP6.05□□□□□ -1.44
LIMA1-202ENST00000394943 ACAA1P09110 424 aaPredicted RBP6.05□□□□□ -1.44
LIMA1-202ENST00000394943 GALP22466 123 aa6.05□□□□□ -1.44
LIMA1-202ENST00000394943 CPT2P23786 658 aa6.05□□□□□ -1.44
LIMA1-202ENST00000394943 CRHBPP24387 322 aa6.05□□□□□ -1.44
LIMA1-202ENST00000394943 HOXC12P31275 282 aa6.05□□□□□ -1.44
LIMA1-202ENST00000394943 CDAP32320 146 aa6.05□□□□□ -1.44
LIMA1-202ENST00000394943 MTNR1AP48039 350 aa6.05□□□□□ -1.44
LIMA1-202ENST00000394943 LCN6P62502 163 aa6.05□□□□□ -1.44
LIMA1-202ENST00000394943 RAB1AP62820 205 aa6.05□□□□□ -1.44
LIMA1-202ENST00000394943 OR8B8Q15620 311 aa6.05□□□□□ -1.44
LIMA1-202ENST00000394943 KCTD21Q4G0X4 260 aa6.05□□□□□ -1.44
LIMA1-202ENST00000394943 MEX3BQ6ZN04 569 aaKnown RBP6.05□□□□□ -1.44
LIMA1-202ENST00000394943 SLC16A14Q7RTX9 510 aa6.05□□□□□ -1.44
LIMA1-202ENST00000394943 ZNF679Q8IYX0 411 aa6.05□□□□□ -1.44
LIMA1-202ENST00000394943 SYT14Q8NB59 555 aa6.05□□□□□ -1.44
LIMA1-202ENST00000394943 ABHD6Q9BV23 337 aa6.05□□□□□ -1.44
LIMA1-202ENST00000394943 CAB39Q9Y376 341 aaPredicted RBP6.05□□□□□ -1.44
LIMA1-202ENST00000394943 EXOSC1Q9Y3B2 195 aaKnown RBP6.05□□□□□ -1.44
LIMA1-202ENST00000394943 RELNP78509 3460 aa6.05□□□□□ -1.44
LIMA1-202ENST00000394943 IQCF6A8MYZ5 107 aa6.04□□□□□ -1.44
LIMA1-202ENST00000394943 RAD51DO75771 328 aa6.04□□□□□ -1.44
LIMA1-202ENST00000394943 SMNDC1O75940 238 aaKnown RBP eCLIP6.04□□□□□ -1.44
LIMA1-202ENST00000394943 MPZL1O95297 269 aa6.04□□□□□ -1.44
LIMA1-202ENST00000394943 BAG2O95816 211 aa6.04□□□□□ -1.44
LIMA1-202ENST00000394943 PSMA6P60900 246 aaKnown RBP6.04□□□□□ -1.44
LIMA1-202ENST00000394943 SNCBQ16143 134 aa6.04□□□□□ -1.44
LIMA1-202ENST00000394943 PABPC1L2AQ5JQF8 200 aa6.04□□□□□ -1.44
LIMA1-202ENST00000394943 CATSPERDQ86XM0 798 aa6.04□□□□□ -1.44
LIMA1-202ENST00000394943 SLC35F2Q8IXU6 374 aa6.04□□□□□ -1.44
LIMA1-202ENST00000394943 CELF2-AS1Q8N7Q2 184 aa6.04□□□□□ -1.44
LIMA1-202ENST00000394943 FAM81AQ8TBF8 368 aa6.04□□□□□ -1.44
LIMA1-202ENST00000394943 GGHQ92820 318 aa6.04□□□□□ -1.44
LIMA1-202ENST00000394943 DOK1Q99704 481 aa6.04□□□□□ -1.44
LIMA1-202ENST00000394943 SH3GL3Q99963 347 aa6.04□□□□□ -1.44
LIMA1-202ENST00000394943 BCL2L14Q9BZR8 327 aa6.04□□□□□ -1.44
LIMA1-202ENST00000394943 MRM2Q9UI43 246 aaKnown RBP6.04□□□□□ -1.44
LIMA1-202ENST00000394943 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP6.04□□□□□ -1.44
LIMA1-202ENST00000394943 ZNF593O00488 134 aaPredicted RBP6.04□□□□□ -1.44
LIMA1-202ENST00000394943 SGCEO43556 437 aa6.04□□□□□ -1.44
LIMA1-202ENST00000394943 FAM20BO75063 409 aa6.04□□□□□ -1.44
LIMA1-202ENST00000394943 SC5DO75845 299 aa6.04□□□□□ -1.44
LIMA1-202ENST00000394943 CDK1P06493 297 aa6.04□□□□□ -1.44
LIMA1-202ENST00000394943 GNAO1P09471 354 aa6.04□□□□□ -1.44
LIMA1-202ENST00000394943 LIMS3P0CW19 117 aa6.04□□□□□ -1.44
LIMA1-202ENST00000394943 LIMS4P0CW20 117 aa6.04□□□□□ -1.44
LIMA1-202ENST00000394943 STOMP27105 288 aa6.04□□□□□ -1.44
LIMA1-202ENST00000394943 CDH11P55287 796 aa6.04□□□□□ -1.44
LIMA1-202ENST00000394943 TESK1Q15569 626 aa6.04□□□□□ -1.44
LIMA1-202ENST00000394943 KLHL12Q53G59 568 aa6.04□□□□□ -1.44
LIMA1-202ENST00000394943 SLC35F1Q5T1Q4 408 aa6.04□□□□□ -1.44
LIMA1-202ENST00000394943 CARD17Q5XLA6 110 aa6.04□□□□□ -1.44
LIMA1-202ENST00000394943 PAMR1Q6UXH9 720 aa6.04□□□□□ -1.44
LIMA1-202ENST00000394943 MUCL1Q96DR8 90 aa6.04□□□□□ -1.44
LIMA1-202ENST00000394943 DNAJA3Q96EY1 480 aa6.04□□□□□ -1.44
LIMA1-202ENST00000394943 HS3ST6Q96QI5 342 aa6.04□□□□□ -1.44
LIMA1-202ENST00000394943 REPIN1Q9BWE0 567 aaKnown RBP6.04□□□□□ -1.44
LIMA1-202ENST00000394943 ZNF696Q9H7X3 374 aa6.04□□□□□ -1.44
LIMA1-202ENST00000394943 MED20Q9H944 212 aa6.04□□□□□ -1.44
LIMA1-202ENST00000394943 CCNB1IP1Q9NPC3 277 aa6.04□□□□□ -1.44
LIMA1-202ENST00000394943 NUFIP1Q9UHK0 495 aaKnown RBP6.04□□□□□ -1.44
LIMA1-202ENST00000394943 RNF115Q9Y4L5 304 aa6.04□□□□□ -1.44
LIMA1-202ENST00000394943 PIEZO2Q9H5I5 2752 aa6.04□□□□□ -1.44
LIMA1-202ENST00000394943 ATRXP46100 2492 aa6.04□□□□□ -1.44
LIMA1-202ENST00000394943 PRSS44E7EML9 344 aa6.04□□□□□ -1.44
LIMA1-202ENST00000394943 CD8AP01732 235 aa6.04□□□□□ -1.44
LIMA1-202ENST00000394943 HTR1AP08908 422 aa6.04□□□□□ -1.44
LIMA1-202ENST00000394943 PCMT1P22061 227 aa6.04□□□□□ -1.44
LIMA1-202ENST00000394943 DCKP27707 260 aa6.04□□□□□ -1.44
LIMA1-202ENST00000394943 PYCR1P32322 319 aa6.04□□□□□ -1.44
LIMA1-202ENST00000394943 ACTA2P62736 377 aa6.04□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms