RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 SLAMF6Q96DU3 332 aa12.52□□□□□ -0.41
COL4A1-201ENST00000375820 TECTBQ96PL2 329 aa12.52□□□□□ -0.41
COL4A1-201ENST00000375820 CSF3RQ99062 836 aa12.52□□□□□ -0.41
COL4A1-201ENST00000375820 SLC35D1Q9NTN3 355 aa12.52□□□□□ -0.41
COL4A1-201ENST00000375820 ADPRHP54922 357 aa12.51□□□□□ -0.41
COL4A1-201ENST00000375820 SNRPNP63162 240 aaKnown RBP12.51□□□□□ -0.41
COL4A1-201ENST00000375820 ZNF816Q0VGE8 651 aaPredicted RBP12.51□□□□□ -0.41
COL4A1-201ENST00000375820 LIPNQ5VXI9 398 aa12.51□□□□□ -0.41
COL4A1-201ENST00000375820 OR10Z1Q8NGY1 313 aa12.51□□□□□ -0.41
COL4A1-201ENST00000375820 UBALD1Q8TB05 177 aa12.51□□□□□ -0.41
COL4A1-201ENST00000375820 SPACA1Q9HBV2 294 aa12.51□□□□□ -0.41
COL4A1-201ENST00000375820 FZR1Q9UM11 496 aa12.51□□□□□ -0.41
COL4A1-201ENST00000375820 ETV7Q9Y603 341 aa12.51□□□□□ -0.41
COL4A1-201ENST00000375820 POM121BA6NF01 834 aa12.51□□□□□ -0.41
COL4A1-201ENST00000375820 ANGPTL7O43827 346 aa12.51□□□□□ -0.41
COL4A1-201ENST00000375820 OR7C2O60412 319 aa12.51□□□□□ -0.41
COL4A1-201ENST00000375820 PMS2P2O95744 297 aa12.51□□□□□ -0.41
COL4A1-201ENST00000375820 TFAP2AP05549 437 aa12.51□□□□□ -0.41
COL4A1-201ENST00000375820 SRPXP78539 464 aa12.51□□□□□ -0.41
COL4A1-201ENST00000375820 OR5I1Q13606 314 aa12.51□□□□□ -0.41
COL4A1-201ENST00000375820 FAM74A1Q5RGS3 127 aa12.51□□□□□ -0.41
COL4A1-201ENST00000375820 UCN3Q969E3 161 aa12.51□□□□□ -0.41
COL4A1-201ENST00000375820 FLVCR1Q9Y5Y0 555 aa12.51□□□□□ -0.41
COL4A1-201ENST00000375820 ZNF90Q03938 601 aa12.51□□□□□ -0.41
COL4A1-201ENST00000375820 RPS19BP1Q86WX3 136 aaKnown RBP12.51□□□□□ -0.41
COL4A1-201ENST00000375820 TEAD3Q99594 435 aa12.51□□□□□ -0.41
COL4A1-201ENST00000375820 C1QTNF3Q9BXJ4 246 aa12.51□□□□□ -0.41
COL4A1-201ENST00000375820 GOLT1BQ9Y3E0 138 aa12.51□□□□□ -0.41
COL4A1-201ENST00000375820 H2AFB1P0C5Y9 115 aa12.51□□□□□ -0.41
COL4A1-201ENST00000375820 CSN1S1P47710 185 aa12.51□□□□□ -0.41
COL4A1-201ENST00000375820 OR2B8PP59922 312 aa12.51□□□□□ -0.41
COL4A1-201ENST00000375820 FAM71E1Q6IPT2 247 aa12.51□□□□□ -0.41
COL4A1-201ENST00000375820 L3MBTL4Q8NA19 623 aa12.51□□□□□ -0.41
COL4A1-201ENST00000375820 OR6M1Q8NGM8 313 aa12.51□□□□□ -0.41
COL4A1-201ENST00000375820 CRYGNQ8WXF5 182 aa12.51□□□□□ -0.41
COL4A1-201ENST00000375820 KCTD12Q96CX2 325 aaKnown RBP12.51□□□□□ -0.41
COL4A1-201ENST00000375820 CMBLQ96DG6 245 aa12.51□□□□□ -0.41
COL4A1-201ENST00000375820 TMEM43Q9BTV4 400 aa12.51□□□□□ -0.41
COL4A1-201ENST00000375820 EGLN1Q9GZT9 426 aa12.51□□□□□ -0.41
COL4A1-201ENST00000375820 ZBP1Q9H171 429 aa12.51□□□□□ -0.41
COL4A1-201ENST00000375820 TRGV8A0A0C4DH27 118 aa12.51□□□□□ -0.41
COL4A1-201ENST00000375820 PPP1R2P9O14990 202 aa12.51□□□□□ -0.41
COL4A1-201ENST00000375820 SLC25A6P12236 298 aa12.51□□□□□ -0.41
COL4A1-201ENST00000375820 IGFBP6P24592 240 aaPredicted RBP12.51□□□□□ -0.41
COL4A1-201ENST00000375820 H3F3CQ6NXT2 135 aa12.51□□□□□ -0.41
COL4A1-201ENST00000375820 ROBO4Q8WZ75 1007 aa12.51□□□□□ -0.41
COL4A1-201ENST00000375820 TIMD4Q96H15 378 aa12.51□□□□□ -0.41
COL4A1-201ENST00000375820 MED18Q9BUE0 208 aa12.51□□□□□ -0.41
COL4A1-201ENST00000375820 SLC2A8Q9NY64 477 aa12.51□□□□□ -0.41
COL4A1-201ENST00000375820 DUSP1P28562 367 aa12.5□□□□□ -0.41
COL4A1-201ENST00000375820 RBP2P50120 134 aa12.5□□□□□ -0.41
COL4A1-201ENST00000375820 EMDP50402 254 aa12.5□□□□□ -0.41
COL4A1-201ENST00000375820 PDCD1Q15116 288 aa12.5□□□□□ -0.41
COL4A1-201ENST00000375820 PLA1AQ53H76 456 aa12.5□□□□□ -0.41
COL4A1-201ENST00000375820 OR10AD1Q8NGE0 317 aa12.5□□□□□ -0.41
COL4A1-201ENST00000375820 OR13F1Q8NGS4 319 aa12.5□□□□□ -0.41
COL4A1-201ENST00000375820 SYT11Q9BT88 431 aa12.5□□□□□ -0.41
COL4A1-201ENST00000375820 THAP10Q9P2Z0 257 aaPredicted RBP12.5□□□□□ -0.41
COL4A1-201ENST00000375820 ADAMTS5Q9UNA0 930 aa12.5□□□□□ -0.41
COL4A1-201ENST00000375820 ZNF835Q9Y2P0 537 aa12.5□□□□□ -0.41
COL4A1-201ENST00000375820 HMGN4O00479 90 aa12.5□□□□□ -0.41
COL4A1-201ENST00000375820 PMP22Q01453 160 aa12.5□□□□□ -0.41
COL4A1-201ENST00000375820 HMGN3Q15651 99 aa12.5□□□□□ -0.41
COL4A1-201ENST00000375820 NKAIN1Q4KMZ8 207 aa12.5□□□□□ -0.41
COL4A1-201ENST00000375820 RELL2Q8NC24 303 aaPredicted RBP12.5□□□□□ -0.41
COL4A1-201ENST00000375820 NUDCD2Q8WVJ2 157 aa12.5□□□□□ -0.41
COL4A1-201ENST00000375820 LYSMD1Q96S90 227 aa12.5□□□□□ -0.41
COL4A1-201ENST00000375820 SOX7Q9BT81 388 aa12.5□□□□□ -0.41
COL4A1-201ENST00000375820 CHRNA9Q9UGM1 479 aa12.5□□□□□ -0.41
COL4A1-201ENST00000375820 A0A1W2PR48 441 aa12.5□□□□□ -0.41
COL4A1-201ENST00000375820 SHISA8B8ZZ34 492 aa12.5□□□□□ -0.41
COL4A1-201ENST00000375820 CYTIPO60759 359 aa12.5□□□□□ -0.41
COL4A1-201ENST00000375820 POU2F2P09086 479 aa12.5□□□□□ -0.41
COL4A1-201ENST00000375820 DTYMKP23919 212 aa12.5□□□□□ -0.41
COL4A1-201ENST00000375820 GRINAQ7Z429 371 aa12.5□□□□□ -0.41
COL4A1-201ENST00000375820 OR5M9Q8NGP3 310 aa12.5□□□□□ -0.41
COL4A1-201ENST00000375820 SPRY1O43609 319 aaPredicted RBP12.5□□□□□ -0.41
COL4A1-201ENST00000375820 CDAP32320 146 aa12.5□□□□□ -0.41
COL4A1-201ENST00000375820 ACSM5Q6NUN0 579 aa12.5□□□□□ -0.41
COL4A1-201ENST00000375820 NKAIN3Q8N8D7 197 aa12.5□□□□□ -0.41
COL4A1-201ENST00000375820 OR1M1Q8NGA1 313 aa12.5□□□□□ -0.41
COL4A1-201ENST00000375820 SLC7A6Q92536 515 aa12.5□□□□□ -0.41
COL4A1-201ENST00000375820 CLEC5AQ9NY25 188 aa12.5□□□□□ -0.41
COL4A1-201ENST00000375820 FGF17O60258 216 aa12.5□□□□□ -0.41
COL4A1-201ENST00000375820 CPEP16870 476 aa12.5□□□□□ -0.41
COL4A1-201ENST00000375820 SOX18P35713 384 aa12.5□□□□□ -0.41
COL4A1-201ENST00000375820 KIR2DL3P43628 341 aa12.5□□□□□ -0.41
COL4A1-201ENST00000375820 ZNF239Q16600 458 aaKnown RBP12.5□□□□□ -0.41
COL4A1-201ENST00000375820 FUNDC1Q8IVP5 155 aa12.5□□□□□ -0.41
COL4A1-201ENST00000375820 CLDN22Q8N7P3 220 aa12.5□□□□□ -0.41
COL4A1-201ENST00000375820 KDF1Q8NAX2 398 aaPredicted RBP12.5□□□□□ -0.41
COL4A1-201ENST00000375820 TMED6Q8WW62 240 aa12.5□□□□□ -0.41
COL4A1-201ENST00000375820 FBXW5Q969U6 566 aa12.5□□□□□ -0.41
COL4A1-201ENST00000375820 ATF6BQ99941 703 aa12.5□□□□□ -0.41
COL4A1-201ENST00000375820 BCO1Q9HAY6 547 aa12.5□□□□□ -0.41
COL4A1-201ENST00000375820 GPR84Q9NQS5 396 aa12.5□□□□□ -0.41
COL4A1-201ENST00000375820 SLC22A11Q9NSA0 550 aa12.5□□□□□ -0.41
COL4A1-201ENST00000375820 OR2A25A4D2G3 310 aa12.49□□□□□ -0.41
COL4A1-201ENST00000375820 SLCO2B1O94956 709 aa12.49□□□□□ -0.41
COL4A1-201ENST00000375820 OR2F2O95006 317 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms