RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 MTX3Q5HYI7 312 aa18.43■□□□□ 0.54
CCDC28B-201ENST00000373602 DIRC2Q96SL1 478 aa18.43■□□□□ 0.54
CCDC28B-201ENST00000373602 EGLN1Q9GZT9 426 aa18.43■□□□□ 0.54
CCDC28B-201ENST00000373602 POFUT1Q9H488 388 aa18.43■□□□□ 0.54
CCDC28B-201ENST00000373602 ZDHHC8Q9ULC8 765 aa18.43■□□□□ 0.54
CCDC28B-201ENST00000373602 GRIP1Q9Y3R0 1128 aa18.43■□□□□ 0.54
CCDC28B-201ENST00000373602 WIPI2Q9Y4P8 454 aa18.43■□□□□ 0.54
CCDC28B-201ENST00000373602 DCTN6O00399 190 aa18.42■□□□□ 0.54
CCDC28B-201ENST00000373602 CD55P08174 381 aa18.42■□□□□ 0.54
CCDC28B-201ENST00000373602 CRABP1P29762 137 aa18.42■□□□□ 0.54
CCDC28B-201ENST00000373602 RRM2P31350 389 aa18.42■□□□□ 0.54
CCDC28B-201ENST00000373602 IFNGR2P38484 337 aa18.42■□□□□ 0.54
CCDC28B-201ENST00000373602 C1orf94Q6P1W5 598 aa18.42■□□□□ 0.54
CCDC28B-201ENST00000373602 DNM1P34Q6PK57 102 aa18.42■□□□□ 0.54
CCDC28B-201ENST00000373602 OR51F2Q8NH61 342 aa18.42■□□□□ 0.54
CCDC28B-201ENST00000373602 OR1F12Q8NHA8 337 aa18.42■□□□□ 0.54
CCDC28B-201ENST00000373602 SLC7A6Q92536 515 aa18.42■□□□□ 0.54
CCDC28B-201ENST00000373602 TSSK2Q96PF2 358 aa18.42■□□□□ 0.54
CCDC28B-201ENST00000373602 LPAR2Q9HBW0 351 aa18.42■□□□□ 0.54
CCDC28B-201ENST00000373602 MSL2Q9HCI7 577 aa18.42■□□□□ 0.54
CCDC28B-201ENST00000373602 HIF1ANQ9NWT6 349 aa18.42■□□□□ 0.54
CCDC28B-201ENST00000373602 ATPIF1Q9UII2 106 aa18.42■□□□□ 0.54
CCDC28B-201ENST00000373602 TMCC3Q9ULS5 477 aa18.42■□□□□ 0.54
CCDC28B-201ENST00000373602 IGLV1-36A0A0B4J1U3 117 aa18.41■□□□□ 0.54
CCDC28B-201ENST00000373602 RER1O15258 196 aa18.41■□□□□ 0.54
CCDC28B-201ENST00000373602 TIMM8AO60220 97 aaPredicted RBP18.41■□□□□ 0.54
CCDC28B-201ENST00000373602 UBOX5O94941 541 aa18.41■□□□□ 0.54
CCDC28B-201ENST00000373602 SRP14P37108 136 aaKnown RBP18.41■□□□□ 0.54
CCDC28B-201ENST00000373602 GSSP48637 474 aa18.41■□□□□ 0.54
CCDC28B-201ENST00000373602 MNAT1P51948 309 aa18.41■□□□□ 0.54
CCDC28B-201ENST00000373602 MXRA7P84157 204 aa18.41■□□□□ 0.54
CCDC28B-201ENST00000373602 CDK5R2Q13319 367 aa18.41■□□□□ 0.54
CCDC28B-201ENST00000373602 KRTAP24-1Q3LI83 254 aa18.41■□□□□ 0.54
CCDC28B-201ENST00000373602 LEG1Q6P5S2 330 aa18.41■□□□□ 0.54
CCDC28B-201ENST00000373602 PGM2L1Q6PCE3 622 aa18.41■□□□□ 0.54
CCDC28B-201ENST00000373602 RINLQ6ZS11 566 aa18.41■□□□□ 0.54
CCDC28B-201ENST00000373602 ZDHHC21Q8IVQ6 265 aa18.41■□□□□ 0.54
CCDC28B-201ENST00000373602 RAB1CQ92928 201 aa18.41■□□□□ 0.54
CCDC28B-201ENST00000373602 TIMD4Q96H15 378 aa18.41■□□□□ 0.54
CCDC28B-201ENST00000373602 ZNF665Q9H7R5 613 aa18.41■□□□□ 0.54
CCDC28B-201ENST00000373602 PURGQ9UJV8 347 aaKnown RBP18.41■□□□□ 0.54
CCDC28B-201ENST00000373602 B9D1Q9UPM9 204 aa18.41■□□□□ 0.54
CCDC28B-201ENST00000373602 STARD10Q9Y365 291 aa18.41■□□□□ 0.54
CCDC28B-201ENST00000373602 GPANK1O95872 356 aa18.4■□□□□ 0.54
CCDC28B-201ENST00000373602 KITLGP21583 273 aa18.4■□□□□ 0.54
CCDC28B-201ENST00000373602 HIST1H3AP68431 136 aa18.4■□□□□ 0.54
CCDC28B-201ENST00000373602 TSPAN31Q12999 210 aa18.4■□□□□ 0.54
CCDC28B-201ENST00000373602 SPRNQ5BIV9 151 aa18.4■□□□□ 0.54
CCDC28B-201ENST00000373602 HIST2H3PS2Q5TEC6 136 aa18.4■□□□□ 0.54
CCDC28B-201ENST00000373602 HIST2H3AQ71DI3 136 aa18.4■□□□□ 0.54
CCDC28B-201ENST00000373602 JAZF1Q86VZ6 243 aa18.4■□□□□ 0.54
CCDC28B-201ENST00000373602 OR6V1Q8N148 313 aa18.4■□□□□ 0.54
CCDC28B-201ENST00000373602 GNPDA2Q8TDQ7 276 aa18.4■□□□□ 0.54
CCDC28B-201ENST00000373602 CCL17Q92583 94 aa18.4■□□□□ 0.54
CCDC28B-201ENST00000373602 RAB39BQ96DA2 213 aa18.4■□□□□ 0.54
CCDC28B-201ENST00000373602 CMBLQ96DG6 245 aa18.4■□□□□ 0.54
CCDC28B-201ENST00000373602 SAMD8Q96LT4 415 aa18.4■□□□□ 0.54
CCDC28B-201ENST00000373602 COG8Q96MW5 612 aa18.4■□□□□ 0.54
CCDC28B-201ENST00000373602 DCLRE1CQ96SD1 692 aaKnown RBP18.4■□□□□ 0.54
CCDC28B-201ENST00000373602 NMNAT3Q96T66 252 aa18.4■□□□□ 0.54
CCDC28B-201ENST00000373602 IFT27Q9BW83 186 aa18.4■□□□□ 0.54
CCDC28B-201ENST00000373602 SRA1Q9HD15 236 aaKnown RBP18.4■□□□□ 0.54
CCDC28B-201ENST00000373602 POLR1DQ9Y2S0 133 aa18.4■□□□□ 0.54
CCDC28B-201ENST00000373602 LHFPL6Q9Y693 200 aa18.4■□□□□ 0.54
CCDC28B-201ENST00000373602 TRAV20A0A0B4J274 112 aa18.39■□□□□ 0.53
CCDC28B-201ENST00000373602 J3QW42 95 aa18.39■□□□□ 0.53
CCDC28B-201ENST00000373602 DEAF1O75398 565 aaPredicted RBP18.39■□□□□ 0.53
CCDC28B-201ENST00000373602 KRT36O76013 467 aa18.39■□□□□ 0.53
CCDC28B-201ENST00000373602 RENP00797 406 aa18.39■□□□□ 0.53
CCDC28B-201ENST00000373602 ANPEPP15144 967 aa18.39■□□□□ 0.53
CCDC28B-201ENST00000373602 HIST1H1CP16403 213 aaKnown RBP18.39■□□□□ 0.53
CCDC28B-201ENST00000373602 CENPAP49450 140 aa18.39■□□□□ 0.53
CCDC28B-201ENST00000373602 HMGA2P52926 109 aa18.39■□□□□ 0.53
CCDC28B-201ENST00000373602 SLC3A1Q07837 685 aa18.39■□□□□ 0.53
CCDC28B-201ENST00000373602 MEP1BQ16820 701 aa18.39■□□□□ 0.53
CCDC28B-201ENST00000373602 PGBD2Q6P3X8 592 aa18.39■□□□□ 0.53
CCDC28B-201ENST00000373602 ZNF620Q6ZNG0 422 aa18.39■□□□□ 0.53
CCDC28B-201ENST00000373602 FITM2Q8N6M3 262 aa18.39■□□□□ 0.53
CCDC28B-201ENST00000373602 GJC3Q8NFK1 279 aa18.39■□□□□ 0.53
CCDC28B-201ENST00000373602 OR4K13Q8NH42 304 aa18.39■□□□□ 0.53
CCDC28B-201ENST00000373602 PTP4A1Q93096 173 aa18.39■□□□□ 0.53
CCDC28B-201ENST00000373602 HAVCR1Q96D42 359 aa18.39■□□□□ 0.53
CCDC28B-201ENST00000373602 ACTR3BQ9P1U1 418 aa18.39■□□□□ 0.53
CCDC28B-201ENST00000373602 B2RBV5 119 aa18.38■□□□□ 0.53
CCDC28B-201ENST00000373602 IDH3BO43837 385 aa18.38■□□□□ 0.53
CCDC28B-201ENST00000373602 IGHV2-5P01817 119 aa18.38■□□□□ 0.53
CCDC28B-201ENST00000373602 DBHP09172 617 aa18.38■□□□□ 0.53
CCDC28B-201ENST00000373602 ATP6V1B2P21281 511 aa18.38■□□□□ 0.53
CCDC28B-201ENST00000373602 RGS6P49758 472 aa18.38■□□□□ 0.53
CCDC28B-201ENST00000373602 TNFAIP6P98066 277 aaPredicted RBP18.38■□□□□ 0.53
CCDC28B-201ENST00000373602 SRSF2Q01130 221 aaKnown RBP18.38■□□□□ 0.53
CCDC28B-201ENST00000373602 COX10Q12887 443 aa18.38■□□□□ 0.53
CCDC28B-201ENST00000373602 ACSM5Q6NUN0 579 aa18.38■□□□□ 0.53
CCDC28B-201ENST00000373602 CYP2R1Q6VVX0 501 aa18.38■□□□□ 0.53
CCDC28B-201ENST00000373602 ZSCAN2Q7Z7L9 614 aaPredicted RBP18.38■□□□□ 0.53
CCDC28B-201ENST00000373602 ZBTB46Q86UZ6 589 aa18.38■□□□□ 0.53
CCDC28B-201ENST00000373602 RFLNBQ8N5W9 214 aa18.38■□□□□ 0.53
CCDC28B-201ENST00000373602 CCT8L2Q96SF2 557 aa18.38■□□□□ 0.53
CCDC28B-201ENST00000373602 COQ7Q99807 217 aa18.38■□□□□ 0.53
CCDC28B-201ENST00000373602 HDHD2Q9H0R4 259 aa18.38■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms