RNA–Protein interactions for RNA: ENST00000357250.10

COL9A1-202, Transcript of collagen type IX alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A1, Length 4,761 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-202ENST00000357250 AVPI1Q5T686 147 aa10.7□□□□□ -0.7
COL9A1-202ENST00000357250 HIST2H3PS2Q5TEC6 136 aa10.7□□□□□ -0.7
COL9A1-202ENST00000357250 NKAIN2Q5VXU1 208 aa10.7□□□□□ -0.7
COL9A1-202ENST00000357250 C6orf15Q6UXA7 325 aaPredicted RBP10.7□□□□□ -0.7
COL9A1-202ENST00000357250 ACOT7LQ6ZUV0 252 aa10.7□□□□□ -0.7
COL9A1-202ENST00000357250 USP51Q70EK9 711 aa10.7□□□□□ -0.7
COL9A1-202ENST00000357250 C16orf52Q8NHV5 167 aa10.7□□□□□ -0.7
COL9A1-202ENST00000357250 STT3BQ8TCJ2 826 aa10.7□□□□□ -0.7
COL9A1-202ENST00000357250 HSD17B8Q92506 261 aa10.7□□□□□ -0.7
COL9A1-202ENST00000357250 NTNG1Q9Y2I2 539 aa10.7□□□□□ -0.7
COL9A1-202ENST00000357250 KLF13Q9Y2Y9 288 aaPredicted RBP10.7□□□□□ -0.7
COL9A1-202ENST00000357250 AHCTF1Q8WYP5 2266 aa10.7□□□□□ -0.7
COL9A1-202ENST00000357250 A0A0A6YYD5 115 aa10.7□□□□□ -0.7
COL9A1-202ENST00000357250 PMS2P1A4D2B8 440 aa10.7□□□□□ -0.7
COL9A1-202ENST00000357250 FCMRO60667 390 aa10.7□□□□□ -0.7
COL9A1-202ENST00000357250 GSTP1P09211 210 aaKnown RBP10.7□□□□□ -0.7
COL9A1-202ENST00000357250 CT45A6P0DMU7 189 aa10.7□□□□□ -0.7
COL9A1-202ENST00000357250 CT45A5P0DMU8 189 aa10.7□□□□□ -0.7
COL9A1-202ENST00000357250 CT45A7P0DMV0 189 aa10.7□□□□□ -0.7
COL9A1-202ENST00000357250 CT45A8P0DMV1 189 aa10.7□□□□□ -0.7
COL9A1-202ENST00000357250 CT45A9P0DMV2 189 aa10.7□□□□□ -0.7
COL9A1-202ENST00000357250 SRFP11831 508 aa10.7□□□□□ -0.7
COL9A1-202ENST00000357250 HOXC8P31273 242 aa10.7□□□□□ -0.7
COL9A1-202ENST00000357250 SERPINF1P36955 418 aa10.7□□□□□ -0.7
COL9A1-202ENST00000357250 HOXA1P49639 335 aaPredicted RBP10.7□□□□□ -0.7
COL9A1-202ENST00000357250 C11orf91Q3C1V1 193 aa10.7□□□□□ -0.7
COL9A1-202ENST00000357250 CT45A2Q5DJT8 189 aa10.7□□□□□ -0.7
COL9A1-202ENST00000357250 CT45A1Q5HYN5 189 aa10.7□□□□□ -0.7
COL9A1-202ENST00000357250 C9orf135Q5VTT2 229 aa10.7□□□□□ -0.7
COL9A1-202ENST00000357250 SHEQ5VZ18 495 aa10.7□□□□□ -0.7
COL9A1-202ENST00000357250 CST9LP1Q5W188 147 aa10.7□□□□□ -0.7
COL9A1-202ENST00000357250 HIST2H3AQ71DI3 136 aa10.7□□□□□ -0.7
COL9A1-202ENST00000357250 ARHGEF39Q8N4T4 335 aa10.7□□□□□ -0.7
COL9A1-202ENST00000357250 CT45A3Q8NHU0 189 aa10.7□□□□□ -0.7
COL9A1-202ENST00000357250 PIGTQ969N2 578 aa10.7□□□□□ -0.7
COL9A1-202ENST00000357250 SLC25A32Q9H2D1 315 aa10.7□□□□□ -0.7
COL9A1-202ENST00000357250 POFUT1Q9H488 388 aa10.7□□□□□ -0.7
COL9A1-202ENST00000357250 AKIP1Q9NQ31 210 aa10.7□□□□□ -0.7
COL9A1-202ENST00000357250 COQ3Q9NZJ6 369 aa10.7□□□□□ -0.7
COL9A1-202ENST00000357250 POMT2Q9UKY4 750 aa10.7□□□□□ -0.7
COL9A1-202ENST00000357250 SLC5A6Q9Y289 635 aa10.7□□□□□ -0.7
COL9A1-202ENST00000357250 PCDHGA5Q9Y5G8 931 aa10.7□□□□□ -0.7
COL9A1-202ENST00000357250 POM121CA8CG34 1229 aa10.69□□□□□ -0.7
COL9A1-202ENST00000357250 ALX3O95076 343 aa10.69□□□□□ -0.7
COL9A1-202ENST00000357250 FABP1P07148 127 aa10.69□□□□□ -0.7
COL9A1-202ENST00000357250 NME2P22392 152 aa10.69□□□□□ -0.7
COL9A1-202ENST00000357250 GPR3P46089 330 aa10.69□□□□□ -0.7
COL9A1-202ENST00000357250 SMAD4Q13485 552 aaKnown RBP10.69□□□□□ -0.7
COL9A1-202ENST00000357250 NAA40Q86UY6 237 aa10.69□□□□□ -0.7
COL9A1-202ENST00000357250 SLC38A9Q8NBW4 561 aa10.69□□□□□ -0.7
COL9A1-202ENST00000357250 ARHGDIGQ99819 225 aa10.69□□□□□ -0.7
COL9A1-202ENST00000357250 TWSG1Q9GZX9 223 aa10.69□□□□□ -0.7
COL9A1-202ENST00000357250 PLEKHA2Q9HB19 425 aa10.69□□□□□ -0.7
COL9A1-202ENST00000357250 WNK3Q9BYP7 1800 aa10.69□□□□□ -0.7
COL9A1-202ENST00000357250 A0A0U1RQK1 487 aa10.69□□□□□ -0.7
COL9A1-202ENST00000357250 MT-ND4LP03901 98 aa10.69□□□□□ -0.7
COL9A1-202ENST00000357250 CSF3P09919 207 aa10.69□□□□□ -0.7
COL9A1-202ENST00000357250 HCCSP53701 268 aa10.69□□□□□ -0.7
COL9A1-202ENST00000357250 SLC17A1Q14916 467 aa10.69□□□□□ -0.7
COL9A1-202ENST00000357250 GCNT2Q8N0V5 402 aa10.69□□□□□ -0.7
COL9A1-202ENST00000357250 MRGPRX1Q96LB2 322 aa10.69□□□□□ -0.7
COL9A1-202ENST00000357250 TECTBQ96PL2 329 aa10.69□□□□□ -0.7
COL9A1-202ENST00000357250 HRASLSQ9HDD0 168 aa10.69□□□□□ -0.7
COL9A1-202ENST00000357250 TAS2R4Q9NYW5 299 aa10.69□□□□□ -0.7
COL9A1-202ENST00000357250 CGGBP1Q9UFW8 167 aaPredicted RBP10.69□□□□□ -0.7
COL9A1-202ENST00000357250 MED16Q9Y2X0 877 aa10.69□□□□□ -0.7
COL9A1-202ENST00000357250 STRAPQ9Y3F4 350 aaKnown RBP10.69□□□□□ -0.7
COL9A1-202ENST00000357250 GLB1P16278 677 aa10.69□□□□□ -0.7
COL9A1-202ENST00000357250 NKX2-1P43699 371 aaPredicted RBP10.69□□□□□ -0.7
COL9A1-202ENST00000357250 TGM4P49221 684 aa10.69□□□□□ -0.7
COL9A1-202ENST00000357250 PSMB3P49720 205 aa10.69□□□□□ -0.7
COL9A1-202ENST00000357250 NPY4RP50391 375 aa10.69□□□□□ -0.7
COL9A1-202ENST00000357250 AKR1C1Q04828 323 aa10.69□□□□□ -0.7
COL9A1-202ENST00000357250 C12orf73Q69YU5 71 aa10.69□□□□□ -0.7
COL9A1-202ENST00000357250 CPEB2Q7Z5Q1 589 aaKnown RBP10.69□□□□□ -0.7
COL9A1-202ENST00000357250 ZNF321PQ8N8H1 164 aa10.69□□□□□ -0.7
COL9A1-202ENST00000357250 OR52N5Q8NH56 324 aa10.69□□□□□ -0.7
COL9A1-202ENST00000357250 PATE1Q8WXA2 126 aa10.69□□□□□ -0.7
COL9A1-202ENST00000357250 DVL3Q92997 716 aaPredicted RBP10.69□□□□□ -0.7
COL9A1-202ENST00000357250 CCDC74AQ96AQ1 378 aa10.69□□□□□ -0.7
COL9A1-202ENST00000357250 WDR34Q96EX3 536 aa10.69□□□□□ -0.7
COL9A1-202ENST00000357250 TRAPPC4Q9Y296 219 aa10.69□□□□□ -0.7
COL9A1-202ENST00000357250 CHST2Q9Y4C5 530 aa10.69□□□□□ -0.7
COL9A1-202ENST00000357250 PUS1Q9Y606 427 aaKnown RBP eCLIP10.69□□□□□ -0.7
COL9A1-202ENST00000357250 MDFIC2A0A1B0GVS7 189 aa10.69□□□□□ -0.7
COL9A1-202ENST00000357250 C20orf202A1L168 122 aa10.69□□□□□ -0.7
COL9A1-202ENST00000357250 LINC01387J3KSC0 135 aa10.69□□□□□ -0.7
COL9A1-202ENST00000357250 DEGS1O15121 323 aa10.69□□□□□ -0.7
COL9A1-202ENST00000357250 BAXQ07812 192 aa10.69□□□□□ -0.7
COL9A1-202ENST00000357250 HYAL4Q2M3T9 481 aa10.69□□□□□ -0.7
COL9A1-202ENST00000357250 AGBL4Q5VU57 503 aa10.69□□□□□ -0.7
COL9A1-202ENST00000357250 SYT13Q7L8C5 426 aa10.69□□□□□ -0.7
COL9A1-202ENST00000357250 ZADH2Q8N4Q0 377 aa10.69□□□□□ -0.7
COL9A1-202ENST00000357250 C15orf54Q8N8G6 183 aa10.69□□□□□ -0.7
COL9A1-202ENST00000357250 OR10J5Q8NHC4 309 aa10.69□□□□□ -0.7
COL9A1-202ENST00000357250 TXN2Q99757 166 aa10.69□□□□□ -0.7
COL9A1-202ENST00000357250 NRSN2Q9GZP1 204 aa10.69□□□□□ -0.7
COL9A1-202ENST00000357250 PLK3Q9H4B4 646 aa10.69□□□□□ -0.7
COL9A1-202ENST00000357250 TPRP12270 2363 aaKnown RBP10.68□□□□□ -0.7
COL9A1-202ENST00000357250 COL11A1P12107 1806 aaPredicted RBP10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms