RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 ZFAND1Q8TCF1 268 aa9.1□□□□□ -0.95
USP54-201ENST00000339859 TMEM106AQ96A25 262 aa9.1□□□□□ -0.95
USP54-201ENST00000339859 SLC6A13Q9NSD5 602 aa9.1□□□□□ -0.95
USP54-201ENST00000339859 LOC107986453A0A1B0GWG9 222 aa9.1□□□□□ -0.95
USP54-201ENST00000339859 WBP4O75554 376 aaKnown RBP9.1□□□□□ -0.95
USP54-201ENST00000339859 SNAPC5O75971 98 aa9.1□□□□□ -0.95
USP54-201ENST00000339859 TK1P04183 234 aa9.1□□□□□ -0.95
USP54-201ENST00000339859 SCG5P05408 212 aa9.1□□□□□ -0.95
USP54-201ENST00000339859 AGFG1P52594 562 aaKnown RBP9.1□□□□□ -0.95
USP54-201ENST00000339859 ZFP36L1Q07352 338 aaKnown RBP9.1□□□□□ -0.95
USP54-201ENST00000339859 ASB10Q8WXI3 467 aa9.1□□□□□ -0.95
USP54-201ENST00000339859 SNAPC3Q92966 411 aa9.1□□□□□ -0.95
USP54-201ENST00000339859 PPP1R14BQ96C90 147 aa9.1□□□□□ -0.95
USP54-201ENST00000339859 UFSP2Q9NUQ7 469 aa9.1□□□□□ -0.95
USP54-201ENST00000339859 SDK1Q7Z5N4 2213 aa9.1□□□□□ -0.95
USP54-201ENST00000339859 TSC2P49815 1807 aa9.1□□□□□ -0.95
USP54-201ENST00000339859 ZNF816-ZNF321PA0A0X1KG74 233 aa9.1□□□□□ -0.95
USP54-201ENST00000339859 A0A1W2PQL4 384 aaPredicted RBP9.1□□□□□ -0.95
USP54-201ENST00000339859 KLF3P57682 345 aaPredicted RBP9.1□□□□□ -0.95
USP54-201ENST00000339859 GNB2P62879 340 aa9.1□□□□□ -0.95
USP54-201ENST00000339859 CD226Q15762 336 aa9.1□□□□□ -0.95
USP54-201ENST00000339859 ZNF574Q6ZN55 896 aaPredicted RBP9.1□□□□□ -0.95
USP54-201ENST00000339859 ACBD4Q8NC06 268 aa9.1□□□□□ -0.95
USP54-201ENST00000339859 RHOXF1Q8NHV9 184 aa9.1□□□□□ -0.95
USP54-201ENST00000339859 JAM3Q9BX67 310 aa9.1□□□□□ -0.95
USP54-201ENST00000339859 SPACA1Q9HBV2 294 aa9.1□□□□□ -0.95
USP54-201ENST00000339859 CCL27Q9Y4X3 112 aa9.1□□□□□ -0.95
USP54-201ENST00000339859 TIAF1O95411 115 aa9.1□□□□□ -0.95
USP54-201ENST00000339859 BPNT1O95861 308 aa9.1□□□□□ -0.95
USP54-201ENST00000339859 HFEQ30201 348 aa9.1□□□□□ -0.95
USP54-201ENST00000339859 PCGF3Q3KNV8 242 aa9.1□□□□□ -0.95
USP54-201ENST00000339859 ALKBH6Q3KRA9 238 aa9.1□□□□□ -0.95
USP54-201ENST00000339859 ZNF695Q8IW36 515 aa9.1□□□□□ -0.95
USP54-201ENST00000339859 FAM185AQ8N0U4 392 aa9.1□□□□□ -0.95
USP54-201ENST00000339859 OR6S1Q8NH40 331 aa9.1□□□□□ -0.95
USP54-201ENST00000339859 CREB3L1Q96BA8 519 aa9.1□□□□□ -0.95
USP54-201ENST00000339859 ZCCHC4Q9H5U6 513 aa9.1□□□□□ -0.95
USP54-201ENST00000339859 MYOZ1Q9NP98 299 aaPredicted RBP9.1□□□□□ -0.95
USP54-201ENST00000339859 GSKIPQ9P0R6 139 aa9.1□□□□□ -0.95
USP54-201ENST00000339859 NLRC5Q86WI3 1866 aa9.1□□□□□ -0.95
USP54-201ENST00000339859 SPRY3O43610 288 aa9.1□□□□□ -0.95
USP54-201ENST00000339859 AKAIN1P0CW23 69 aa9.1□□□□□ -0.95
USP54-201ENST00000339859 MPGP29372 298 aa9.1□□□□□ -0.95
USP54-201ENST00000339859 DDOSTP39656 456 aa9.1□□□□□ -0.95
USP54-201ENST00000339859 CATR1Q13166 79 aa9.1□□□□□ -0.95
USP54-201ENST00000339859 SCGB2A2Q13296 93 aa9.1□□□□□ -0.95
USP54-201ENST00000339859 ZNF181Q2M3W8 571 aa9.1□□□□□ -0.95
USP54-201ENST00000339859 PAN3Q58A45 887 aaKnown RBP9.1□□□□□ -0.95
USP54-201ENST00000339859 ATG4DQ86TL0 474 aaPredicted RBP9.1□□□□□ -0.95
USP54-201ENST00000339859 PAQR8Q8TEZ7 354 aa9.1□□□□□ -0.95
USP54-201ENST00000339859 HINT3Q9NQE9 182 aaKnown RBP9.1□□□□□ -0.95
USP54-201ENST00000339859 TP53TG5Q9Y2B4 290 aa9.1□□□□□ -0.95
USP54-201ENST00000339859 ETV7Q9Y603 341 aa9.1□□□□□ -0.95
USP54-201ENST00000339859 ACOD1A6NK06 481 aa9.09□□□□□ -0.95
USP54-201ENST00000339859 MTNR1BP49286 362 aa9.09□□□□□ -0.95
USP54-201ENST00000339859 EMX1Q04741 257 aaPredicted RBP9.09□□□□□ -0.95
USP54-201ENST00000339859 SLC17A1Q14916 467 aa9.09□□□□□ -0.95
USP54-201ENST00000339859 ESCO2Q56NI9 601 aa9.09□□□□□ -0.95
USP54-201ENST00000339859 RAB3CQ96E17 227 aa9.09□□□□□ -0.95
USP54-201ENST00000339859 CCDC59Q9P031 241 aaKnown RBP9.09□□□□□ -0.95
USP54-201ENST00000339859 RCE1Q9Y256 329 aa9.09□□□□□ -0.95
USP54-201ENST00000339859 KANTRA0A1W2PQU2 76 aa9.09□□□□□ -0.95
USP54-201ENST00000339859 NOTOA8MTQ0 251 aa9.09□□□□□ -0.95
USP54-201ENST00000339859 ENSAO43768 121 aaKnown RBP9.09□□□□□ -0.95
USP54-201ENST00000339859 PMP22Q01453 160 aa9.09□□□□□ -0.95
USP54-201ENST00000339859 CBLN3Q6UW01 205 aa9.09□□□□□ -0.95
USP54-201ENST00000339859 SYS1Q8N2H4 156 aa9.09□□□□□ -0.95
USP54-201ENST00000339859 OR1M1Q8NGA1 313 aa9.09□□□□□ -0.95
USP54-201ENST00000339859 NRG4Q8WWG1 115 aa9.09□□□□□ -0.95
USP54-201ENST00000339859 OPALINQ96PE5 141 aa9.09□□□□□ -0.95
USP54-201ENST00000339859 SPSB2Q99619 263 aa9.09□□□□□ -0.95
USP54-201ENST00000339859 CCDC32Q9BV29 185 aa9.09□□□□□ -0.95
USP54-201ENST00000339859 RAB22AQ9UL26 194 aa9.09□□□□□ -0.95
USP54-201ENST00000339859 NEUROG3Q9Y4Z2 214 aa9.09□□□□□ -0.95
USP54-201ENST00000339859 CCNKO75909 580 aa9.09□□□□□ -0.95
USP54-201ENST00000339859 IL1AP01583 271 aa9.09□□□□□ -0.95
USP54-201ENST00000339859 ZNF121P58317 390 aaPredicted RBP9.09□□□□□ -0.95
USP54-201ENST00000339859 PSMA6P60900 246 aaKnown RBP9.09□□□□□ -0.95
USP54-201ENST00000339859 CFHR1Q03591 330 aa9.09□□□□□ -0.95
USP54-201ENST00000339859 LTC4SQ16873 150 aa9.09□□□□□ -0.95
USP54-201ENST00000339859 SMIM21Q3B7S5 101 aa9.09□□□□□ -0.95
USP54-201ENST00000339859 ACSM5Q6NUN0 579 aa9.09□□□□□ -0.95
USP54-201ENST00000339859 BCDIN3DQ7Z5W3 292 aaKnown RBP9.09□□□□□ -0.95
USP54-201ENST00000339859 FOXRED2Q8IWF2 684 aa9.09□□□□□ -0.95
USP54-201ENST00000339859 FAM71CQ8NEG0 241 aa9.09□□□□□ -0.95
USP54-201ENST00000339859 OR6M1Q8NGM8 313 aa9.09□□□□□ -0.95
USP54-201ENST00000339859 PLK3Q9H4B4 646 aa9.09□□□□□ -0.95
USP54-201ENST00000339859 BCO1Q9HAY6 547 aa9.09□□□□□ -0.95
USP54-201ENST00000339859 ACOXLQ9NUZ1 547 aa9.09□□□□□ -0.95
USP54-201ENST00000339859 ZNF736B4DX44 427 aaPredicted RBP9.09□□□□□ -0.95
USP54-201ENST00000339859 HSPB6O14558 160 aa9.09□□□□□ -0.95
USP54-201ENST00000339859 TSPAN2O60636 221 aa9.09□□□□□ -0.95
USP54-201ENST00000339859 VEGFCP49767 419 aa9.09□□□□□ -0.95
USP54-201ENST00000339859 AP2S1P53680 142 aaPredicted RBP9.09□□□□□ -0.95
USP54-201ENST00000339859 SNTB2Q13425 540 aaKnown RBP9.09□□□□□ -0.95
USP54-201ENST00000339859 UNQ6494/PRO21346Q6UXR6 183 aa9.09□□□□□ -0.95
USP54-201ENST00000339859 SGPP2Q8IWX5 399 aa9.09□□□□□ -0.95
USP54-201ENST00000339859 SPACA3Q8IXA5 215 aa9.09□□□□□ -0.95
USP54-201ENST00000339859 ELMOD2Q8IZ81 293 aa9.09□□□□□ -0.95
USP54-201ENST00000339859 OR6K3Q8NGY3 331 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 128.3 ms