RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 VSTM5A8MXK1 200 aa13.7□□□□□ -0.22
CCDC28A-201ENST00000332797 PRODHO43272 600 aa13.7□□□□□ -0.22
CCDC28A-201ENST00000332797 LCKP06239 509 aa13.7□□□□□ -0.22
CCDC28A-201ENST00000332797 PSKH1P11801 424 aa13.7□□□□□ -0.22
CCDC28A-201ENST00000332797 GSTT1P30711 240 aa13.7□□□□□ -0.22
CCDC28A-201ENST00000332797 GLRXP35754 106 aa13.7□□□□□ -0.22
CCDC28A-201ENST00000332797 WNT5AP41221 380 aa13.7□□□□□ -0.22
CCDC28A-201ENST00000332797 ELFN2Q5R3F8 820 aa13.7□□□□□ -0.22
CCDC28A-201ENST00000332797 C11orf71Q6IPW1 123 aa13.7□□□□□ -0.22
CCDC28A-201ENST00000332797 ERI1Q8IV48 349 aaKnown RBP13.7□□□□□ -0.22
CCDC28A-201ENST00000332797 TCEANCQ8N8B7 351 aa13.7□□□□□ -0.22
CCDC28A-201ENST00000332797 SLC7A6Q92536 515 aa13.7□□□□□ -0.22
CCDC28A-201ENST00000332797 PERPQ96FX8 193 aa13.7□□□□□ -0.22
CCDC28A-201ENST00000332797 INTS14Q96SY0 518 aa13.7□□□□□ -0.22
CCDC28A-201ENST00000332797 PITX2Q99697 317 aa13.7□□□□□ -0.22
CCDC28A-201ENST00000332797 SLC29A1Q99808 456 aa13.7□□□□□ -0.22
CCDC28A-201ENST00000332797 HDHD2Q9H0R4 259 aa13.7□□□□□ -0.22
CCDC28A-201ENST00000332797 CMAHPQ9Y471 501 aa13.7□□□□□ -0.22
CCDC28A-201ENST00000332797 ZNF593O00488 134 aaPredicted RBP13.69□□□□□ -0.22
CCDC28A-201ENST00000332797 TLX2O43763 284 aaPredicted RBP13.69□□□□□ -0.22
CCDC28A-201ENST00000332797 TMCC2O75069 709 aa13.69□□□□□ -0.22
CCDC28A-201ENST00000332797 PCSK6P29122 969 aa13.69□□□□□ -0.22
CCDC28A-201ENST00000332797 RAD52P43351 418 aa13.69□□□□□ -0.22
CCDC28A-201ENST00000332797 UCP2P55851 309 aa13.69□□□□□ -0.22
CCDC28A-201ENST00000332797 ERVS71-1P61550 626 aa13.69□□□□□ -0.22
CCDC28A-201ENST00000332797 ELF3P78545 371 aaPredicted RBP13.69□□□□□ -0.22
CCDC28A-201ENST00000332797 APOFQ13790 326 aa13.69□□□□□ -0.22
CCDC28A-201ENST00000332797 TRIP10Q15642 601 aa13.69□□□□□ -0.22
CCDC28A-201ENST00000332797 ZNF101Q8IZC7 436 aa13.69□□□□□ -0.22
CCDC28A-201ENST00000332797 OR6N2Q8NGY6 317 aa13.69□□□□□ -0.22
CCDC28A-201ENST00000332797 TMEM163Q8TC26 289 aa13.69□□□□□ -0.22
CCDC28A-201ENST00000332797 IL4I1Q96RQ9 567 aa13.69□□□□□ -0.22
CCDC28A-201ENST00000332797 FOXC2Q99958 501 aa13.69□□□□□ -0.22
CCDC28A-201ENST00000332797 CACNG6Q9BXT2 260 aa13.69□□□□□ -0.22
CCDC28A-201ENST00000332797 BCL2L14Q9BZR8 327 aa13.69□□□□□ -0.22
CCDC28A-201ENST00000332797 TOR3AQ9H497 397 aa13.69□□□□□ -0.22
CCDC28A-201ENST00000332797 ATPIF1Q9UII2 106 aa13.69□□□□□ -0.22
CCDC28A-201ENST00000332797 FZR1Q9UM11 496 aa13.69□□□□□ -0.22
CCDC28A-201ENST00000332797 CCDC168Q8NDH2 2452 aa13.69□□□□□ -0.22
CCDC28A-201ENST00000332797 B9A039 149 aa13.68□□□□□ -0.22
CCDC28A-201ENST00000332797 OVOL3O00110 214 aa13.68□□□□□ -0.22
CCDC28A-201ENST00000332797 ABHD16AO95870 558 aa13.68□□□□□ -0.22
CCDC28A-201ENST00000332797 DBHP09172 617 aa13.68□□□□□ -0.22
CCDC28A-201ENST00000332797 SLC2A5P22732 501 aa13.68□□□□□ -0.22
CCDC28A-201ENST00000332797 PTH2RP49190 550 aa13.68□□□□□ -0.22
CCDC28A-201ENST00000332797 SNRPD2P62316 118 aaKnown RBP13.68□□□□□ -0.22
CCDC28A-201ENST00000332797 MSMPQ1L6U9 139 aa13.68□□□□□ -0.22
CCDC28A-201ENST00000332797 SLC35D3Q5M8T2 416 aa13.68□□□□□ -0.22
CCDC28A-201ENST00000332797 RGS7BPQ6MZT1 257 aaPredicted RBP13.68□□□□□ -0.22
CCDC28A-201ENST00000332797 RFPL4BQ6ZWI9 263 aa13.68□□□□□ -0.22
CCDC28A-201ENST00000332797 DCXRQ7Z4W1 244 aa13.68□□□□□ -0.22
CCDC28A-201ENST00000332797 BCDIN3DQ7Z5W3 292 aaKnown RBP13.68□□□□□ -0.22
CCDC28A-201ENST00000332797 OR1J1Q8NGS3 322 aa13.68□□□□□ -0.22
CCDC28A-201ENST00000332797 ABHD4Q8TB40 342 aa13.68□□□□□ -0.22
CCDC28A-201ENST00000332797 MRPL24Q96A35 216 aaKnown RBP13.68□□□□□ -0.22
CCDC28A-201ENST00000332797 MAP6Q96JE9 813 aa13.68□□□□□ -0.22
CCDC28A-201ENST00000332797 C4orf45Q96LM5 186 aa13.68□□□□□ -0.22
CCDC28A-201ENST00000332797 MBOAT4Q96T53 435 aa13.68□□□□□ -0.22
CCDC28A-201ENST00000332797 COQ7Q99807 217 aa13.68□□□□□ -0.22
CCDC28A-201ENST00000332797 PLK3Q9H4B4 646 aa13.68□□□□□ -0.22
CCDC28A-201ENST00000332797 GRIP1Q9Y3R0 1128 aa13.68□□□□□ -0.22
CCDC28A-201ENST00000332797 SELENOFO60613 162 aa13.67□□□□□ -0.22
CCDC28A-201ENST00000332797 NAA10P41227 235 aaPredicted RBP13.67□□□□□ -0.22
CCDC28A-201ENST00000332797 CDC42P60953 191 aa13.67□□□□□ -0.22
CCDC28A-201ENST00000332797 EFNB3Q15768 340 aa13.67□□□□□ -0.22
CCDC28A-201ENST00000332797 PCK2Q16822 640 aa13.67□□□□□ -0.22
CCDC28A-201ENST00000332797 LRRC36Q1X8D7 754 aa13.67□□□□□ -0.22
CCDC28A-201ENST00000332797 SWI5Q1ZZU3 235 aa13.67□□□□□ -0.22
CCDC28A-201ENST00000332797 MST1LQ2TV78 715 aa13.67□□□□□ -0.22
CCDC28A-201ENST00000332797 TEX30Q5JUR7 227 aa13.67□□□□□ -0.22
CCDC28A-201ENST00000332797 SPATA46Q5T0L3 261 aa13.67□□□□□ -0.22
CCDC28A-201ENST00000332797 LCN1P1Q5VSP4 162 aa13.67□□□□□ -0.22
CCDC28A-201ENST00000332797 ARL9Q6T311 187 aa13.67□□□□□ -0.22
CCDC28A-201ENST00000332797 UNQ6126/PRO20091Q6UXV3 157 aa13.67□□□□□ -0.22
CCDC28A-201ENST00000332797 DPY19L4Q7Z388 723 aa13.67□□□□□ -0.22
CCDC28A-201ENST00000332797 FAM81AQ8TBF8 368 aa13.67□□□□□ -0.22
CCDC28A-201ENST00000332797 ATF6BQ99941 703 aa13.67□□□□□ -0.22
CCDC28A-201ENST00000332797 SYT3Q9BQG1 590 aa13.67□□□□□ -0.22
CCDC28A-201ENST00000332797 MRPL37Q9BZE1 423 aaKnown RBP13.67□□□□□ -0.22
CCDC28A-201ENST00000332797 GSX2Q9BZM3 304 aa13.67□□□□□ -0.22
CCDC28A-201ENST00000332797 MARCH7Q9H992 704 aa13.67□□□□□ -0.22
CCDC28A-201ENST00000332797 ELOVL3Q9HB03 270 aa13.67□□□□□ -0.22
CCDC28A-201ENST00000332797 PNRC2Q9NPJ4 139 aaKnown RBP13.67□□□□□ -0.22
CCDC28A-201ENST00000332797 ZNF701Q9NV72 531 aaPredicted RBP13.67□□□□□ -0.22
CCDC28A-201ENST00000332797 CCDC182A6NF36 153 aa13.67□□□□□ -0.22
CCDC28A-201ENST00000332797 BMP4P12644 408 aa13.67□□□□□ -0.22
CCDC28A-201ENST00000332797 PEX2P28328 305 aa13.67□□□□□ -0.22
CCDC28A-201ENST00000332797 ATP5J2P56134 94 aa13.67□□□□□ -0.22
CCDC28A-201ENST00000332797 PPP1CBP62140 327 aa13.67□□□□□ -0.22
CCDC28A-201ENST00000332797 EFNB1P98172 346 aa13.67□□□□□ -0.22
CCDC28A-201ENST00000332797 ECH1Q13011 328 aa13.67□□□□□ -0.22
CCDC28A-201ENST00000332797 EIF2B1Q14232 305 aaKnown RBP13.67□□□□□ -0.22
CCDC28A-201ENST00000332797 LPCAT4Q643R3 524 aa13.67□□□□□ -0.22
CCDC28A-201ENST00000332797 LRP11Q86VZ4 500 aa13.67□□□□□ -0.22
CCDC28A-201ENST00000332797 TIGD4Q8IY51 512 aa13.67□□□□□ -0.22
CCDC28A-201ENST00000332797 LRRC75A-AS1Q8N1F1 130 aa13.67□□□□□ -0.22
CCDC28A-201ENST00000332797 GALNT4Q8N4A0 578 aa13.67□□□□□ -0.22
CCDC28A-201ENST00000332797 OR10S1Q8NGN2 331 aa13.67□□□□□ -0.22
CCDC28A-201ENST00000332797 TRMT61AQ96FX7 289 aaKnown RBP13.67□□□□□ -0.22
CCDC28A-201ENST00000332797 IMPAD1Q9NX62 359 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms