RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 ZNF584Q8IVC4 421 aa12.14□□□□□ -0.47
SKA3-201ENST00000298260 ZNF615Q8N8J6 731 aa12.14□□□□□ -0.47
SKA3-201ENST00000298260 ZNF417Q8TAU3 575 aa12.14□□□□□ -0.47
SKA3-201ENST00000298260 ST7LQ8TDW4 575 aa12.14□□□□□ -0.47
SKA3-201ENST00000298260 IRF7Q92985 503 aa12.14□□□□□ -0.47
SKA3-201ENST00000298260 SLC41A2Q96JW4 573 aa12.14□□□□□ -0.47
SKA3-201ENST00000298260 KXD1Q9BQD3 176 aa12.14□□□□□ -0.47
SKA3-201ENST00000298260 OCSTAMPQ9BR26 566 aa12.14□□□□□ -0.47
SKA3-201ENST00000298260 TCEAL7Q9BRU2 100 aa12.14□□□□□ -0.47
SKA3-201ENST00000298260 TMPRSS5Q9H3S3 457 aa12.14□□□□□ -0.47
SKA3-201ENST00000298260 TAS2R4Q9NYW5 299 aa12.14□□□□□ -0.47
SKA3-201ENST00000298260 TREM2Q9NZC2 230 aa12.14□□□□□ -0.47
SKA3-201ENST00000298260 RTTNQ86VV8 2226 aa12.13□□□□□ -0.47
SKA3-201ENST00000298260 RHPN2P1A8MT19 583 aa12.13□□□□□ -0.47
SKA3-201ENST00000298260 EFSO43281 561 aa12.13□□□□□ -0.47
SKA3-201ENST00000298260 NME2P1O60361 137 aa12.13□□□□□ -0.47
SKA3-201ENST00000298260 SLC34A2O95436 690 aa12.13□□□□□ -0.47
SKA3-201ENST00000298260 IFNA2P01563 188 aa12.13□□□□□ -0.47
SKA3-201ENST00000298260 ADRB3P13945 408 aa12.13□□□□□ -0.47
SKA3-201ENST00000298260 PEBP1P30086 187 aaKnown RBP12.13□□□□□ -0.47
SKA3-201ENST00000298260 SSTP61278 116 aa12.13□□□□□ -0.47
SKA3-201ENST00000298260 RUNX2Q13950 521 aa12.13□□□□□ -0.47
SKA3-201ENST00000298260 TMEM35AQ53FP2 167 aa12.13□□□□□ -0.47
SKA3-201ENST00000298260 TMEM244Q5VVB8 128 aa12.13□□□□□ -0.47
SKA3-201ENST00000298260 OR2A2Q6IF42 318 aa12.13□□□□□ -0.47
SKA3-201ENST00000298260 OR5T3Q8NGG3 340 aa12.13□□□□□ -0.47
SKA3-201ENST00000298260 OR2I1PQ8NGU4 316 aa12.13□□□□□ -0.47
SKA3-201ENST00000298260 EDAQ92838 391 aa12.13□□□□□ -0.47
SKA3-201ENST00000298260 SUCNR1Q9BXA5 334 aa12.13□□□□□ -0.47
SKA3-201ENST00000298260 NMNAT2Q9BZQ4 307 aa12.13□□□□□ -0.47
SKA3-201ENST00000298260 ATG2BQ96BY7 2078 aa12.13□□□□□ -0.47
SKA3-201ENST00000298260 OBSL1O75147 1896 aa12.13□□□□□ -0.47
SKA3-201ENST00000298260 TGM5O43548 720 aa12.13□□□□□ -0.47
SKA3-201ENST00000298260 RDH16O75452 317 aa12.13□□□□□ -0.47
SKA3-201ENST00000298260 TACSTD2P09758 323 aa12.13□□□□□ -0.47
SKA3-201ENST00000298260 BTF3P20290 206 aaKnown RBP12.13□□□□□ -0.47
SKA3-201ENST00000298260 ITGA3P26006 1051 aa12.13□□□□□ -0.47
SKA3-201ENST00000298260 RIDAP52758 137 aaKnown RBP12.13□□□□□ -0.47
SKA3-201ENST00000298260 ACTBL2Q562R1 376 aa12.13□□□□□ -0.47
SKA3-201ENST00000298260 METRNLQ641Q3 311 aa12.13□□□□□ -0.47
SKA3-201ENST00000298260 LPCAT3Q6P1A2 487 aa12.13□□□□□ -0.47
SKA3-201ENST00000298260 DGAT2L6Q6ZPD8 337 aa12.13□□□□□ -0.47
SKA3-201ENST00000298260 FJX1Q86VR8 437 aa12.13□□□□□ -0.47
SKA3-201ENST00000298260 CD300LFQ8TDQ1 290 aa12.13□□□□□ -0.47
SKA3-201ENST00000298260 ADAMTS17Q8TE56 1095 aa12.13□□□□□ -0.47
SKA3-201ENST00000298260 LINC00615Q96LM1 132 aaPredicted RBP12.13□□□□□ -0.47
SKA3-201ENST00000298260 MOGAT1Q96PD6 335 aa12.13□□□□□ -0.47
SKA3-201ENST00000298260 MRI1Q9BV20 369 aa12.13□□□□□ -0.47
SKA3-201ENST00000298260 COMMD4Q9H0A8 199 aa12.13□□□□□ -0.47
SKA3-201ENST00000298260 KLF15Q9UIH9 416 aa12.13□□□□□ -0.47
SKA3-201ENST00000298260 SLC17A2O00624 439 aa12.12□□□□□ -0.47
SKA3-201ENST00000298260 OR10H2O60403 315 aa12.12□□□□□ -0.47
SKA3-201ENST00000298260 RPS4Y1P22090 263 aaKnown RBP12.12□□□□□ -0.47
SKA3-201ENST00000298260 GLP1RP43220 463 aa12.12□□□□□ -0.47
SKA3-201ENST00000298260 STARD6P59095 220 aa12.12□□□□□ -0.47
SKA3-201ENST00000298260 RAB32Q13637 225 aa12.12□□□□□ -0.47
SKA3-201ENST00000298260 ALG11Q2TAA5 492 aa12.12□□□□□ -0.47
SKA3-201ENST00000298260 ZNF550Q7Z398 422 aa12.12□□□□□ -0.47
SKA3-201ENST00000298260 TRAPPC6BQ86SZ2 158 aa12.12□□□□□ -0.47
SKA3-201ENST00000298260 GKN2Q86XP6 184 aa12.12□□□□□ -0.47
SKA3-201ENST00000298260 MCHR2Q969V1 340 aa12.12□□□□□ -0.47
SKA3-201ENST00000298260 RAB3CQ96E17 227 aa12.12□□□□□ -0.47
SKA3-201ENST00000298260 OR10C1Q96KK4 312 aa12.12□□□□□ -0.47
SKA3-201ENST00000298260 SDHAF3Q9NRP4 125 aa12.12□□□□□ -0.47
SKA3-201ENST00000298260 UFSP2Q9NUQ7 469 aa12.12□□□□□ -0.47
SKA3-201ENST00000298260 GPR34Q9UPC5 381 aa12.12□□□□□ -0.47
SKA3-201ENST00000298260 CCL16O15467 120 aa12.12□□□□□ -0.47
SKA3-201ENST00000298260 FGF17O60258 216 aa12.12□□□□□ -0.47
SKA3-201ENST00000298260 C1QL1O75973 258 aa12.12□□□□□ -0.47
SKA3-201ENST00000298260 IGKV1D-16P01601 117 aa12.12□□□□□ -0.47
SKA3-201ENST00000298260 RPS10P46783 165 aaKnown RBP12.12□□□□□ -0.47
SKA3-201ENST00000298260 KIAA0141Q14154 515 aaPredicted RBP12.12□□□□□ -0.47
SKA3-201ENST00000298260 GAMTQ14353 236 aa12.12□□□□□ -0.47
SKA3-201ENST00000298260 MEF2DQ14814 521 aa12.12□□□□□ -0.47
SKA3-201ENST00000298260 ARHGAP19Q14CB8 494 aa12.12□□□□□ -0.47
SKA3-201ENST00000298260 OR2L3Q8NG85 312 aa12.12□□□□□ -0.47
SKA3-201ENST00000298260 OR10D4PQ8NGN7 298 aa12.12□□□□□ -0.47
SKA3-201ENST00000298260 ASB13Q8WXK3 278 aa12.12□□□□□ -0.47
SKA3-201ENST00000298260 SMIM8Q96KF7 97 aa12.12□□□□□ -0.47
SKA3-201ENST00000298260 PRDM13Q9H4Q3 707 aa12.12□□□□□ -0.47
SKA3-201ENST00000298260 RGCCQ9H4X1 137 aa12.12□□□□□ -0.47
SKA3-201ENST00000298260 YBX2Q9Y2T7 364 aaKnown RBP12.12□□□□□ -0.47
SKA3-201ENST00000298260 MRPS2Q9Y399 296 aaKnown RBP12.12□□□□□ -0.47
SKA3-201ENST00000298260 TIMM10BQ9Y5J6 103 aa12.12□□□□□ -0.47
SKA3-201ENST00000298260 MOSPD3O75425 235 aa12.11□□□□□ -0.47
SKA3-201ENST00000298260 MAP3K8P41279 467 aa12.11□□□□□ -0.47
SKA3-201ENST00000298260 SULT1A1P50225 295 aa12.11□□□□□ -0.47
SKA3-201ENST00000298260 NPY4RP50391 375 aa12.11□□□□□ -0.47
SKA3-201ENST00000298260 SLC7A9P82251 487 aa12.11□□□□□ -0.47
SKA3-201ENST00000298260 CCINQ13939 588 aa12.11□□□□□ -0.47
SKA3-201ENST00000298260 TCEAL5Q5H9L2 206 aa12.11□□□□□ -0.47
SKA3-201ENST00000298260 ANKRD33Q7Z3H0 272 aa12.11□□□□□ -0.47
SKA3-201ENST00000298260 VN1R4Q7Z5H5 301 aa12.11□□□□□ -0.47
SKA3-201ENST00000298260 NRSN1Q8IZ57 195 aa12.11□□□□□ -0.47
SKA3-201ENST00000298260 OR52E1Q8NGJ3 308 aa12.11□□□□□ -0.47
SKA3-201ENST00000298260 ZNF587Q96SQ5 575 aaPredicted RBP12.11□□□□□ -0.47
SKA3-201ENST00000298260 ZNF426Q9BUY5 554 aa12.11□□□□□ -0.47
SKA3-201ENST00000298260 PCBD2Q9H0N5 130 aa12.11□□□□□ -0.47
SKA3-201ENST00000298260 TAF9BQ9HBM6 251 aa12.11□□□□□ -0.47
SKA3-201ENST00000298260 DNAJB12Q9NXW2 375 aaKnown RBP12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms