RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 SLC23A1Q9UHI7 598 aa12.8□□□□□ -0.36
CCDC88A-201ENST00000263630 PARP4Q9UKK3 1724 aaKnown RBP12.8□□□□□ -0.36
CCDC88A-201ENST00000263630 LYSMD2Q8IV50 215 aa12.8□□□□□ -0.36
CCDC88A-201ENST00000263630 NEIL2Q969S2 332 aa12.8□□□□□ -0.36
CCDC88A-201ENST00000263630 LSM2Q9Y333 95 aaKnown RBP12.8□□□□□ -0.36
CCDC88A-201ENST00000263630 SCN3AQ9NY46 2000 aa12.8□□□□□ -0.36
CCDC88A-201ENST00000263630 TMEM238LA0A1B0GVL6 79 aa12.8□□□□□ -0.36
CCDC88A-201ENST00000263630 A6NJY4 79 aa12.8□□□□□ -0.36
CCDC88A-201ENST00000263630 PPP1R11O60927 126 aaPredicted RBP12.8□□□□□ -0.36
CCDC88A-201ENST00000263630 NOVA1P51513 510 aaKnown RBP12.8□□□□□ -0.36
CCDC88A-201ENST00000263630 PJVKQ0ZLH3 352 aa12.8□□□□□ -0.36
CCDC88A-201ENST00000263630 MLF1P58340 268 aa12.8□□□□□ -0.36
CCDC88A-201ENST00000263630 NPY5RQ15761 445 aa12.8□□□□□ -0.36
CCDC88A-201ENST00000263630 TP53RKQ96S44 253 aa12.8□□□□□ -0.36
CCDC88A-201ENST00000263630 SLCO1B1Q9Y6L6 691 aa12.8□□□□□ -0.36
CCDC88A-201ENST00000263630 DNASE2O00115 360 aaPredicted RBP12.8□□□□□ -0.36
CCDC88A-201ENST00000263630 P2RY10O00398 339 aa12.8□□□□□ -0.36
CCDC88A-201ENST00000263630 IRS1P35568 1242 aa12.8□□□□□ -0.36
CCDC88A-201ENST00000263630 DDOSTP39656 456 aa12.8□□□□□ -0.36
CCDC88A-201ENST00000263630 CCR6P51684 374 aa12.8□□□□□ -0.36
CCDC88A-201ENST00000263630 ELOBQ15370 118 aa12.8□□□□□ -0.36
CCDC88A-201ENST00000263630 AMIGO3Q86WK7 504 aa12.8□□□□□ -0.36
CCDC88A-201ENST00000263630 CLEC4DQ8WXI8 215 aa12.8□□□□□ -0.36
CCDC88A-201ENST00000263630 MEGF6O75095 1541 aa12.8□□□□□ -0.36
CCDC88A-201ENST00000263630 M0R1X1 148 aa12.8□□□□□ -0.36
CCDC88A-201ENST00000263630 TTRP02766 147 aa12.8□□□□□ -0.36
CCDC88A-201ENST00000263630 RAF1P04049 648 aa12.8□□□□□ -0.36
CCDC88A-201ENST00000263630 HTR1DP28221 377 aa12.8□□□□□ -0.36
CCDC88A-201ENST00000263630 STUMQ69YW2 141 aa12.8□□□□□ -0.36
CCDC88A-201ENST00000263630 SLC38A9Q8NBW4 561 aa12.8□□□□□ -0.36
CCDC88A-201ENST00000263630 GPX8Q8TED1 209 aa12.8□□□□□ -0.36
CCDC88A-201ENST00000263630 UBQLN3Q9H347 655 aa12.8□□□□□ -0.36
CCDC88A-201ENST00000263630 TRAV20A0A0B4J274 112 aa12.79□□□□□ -0.36
CCDC88A-201ENST00000263630 RPL12P30050 165 aaKnown RBP12.79□□□□□ -0.36
CCDC88A-201ENST00000263630 SRSF9Q13242 221 aaKnown RBP eCLIP12.79□□□□□ -0.36
CCDC88A-201ENST00000263630 ZC3HAV1LQ96H79 300 aaKnown RBP12.79□□□□□ -0.36
CCDC88A-201ENST00000263630 MRPL13Q9BYD1 178 aaKnown RBP12.79□□□□□ -0.36
CCDC88A-201ENST00000263630 LANCL2Q9NS86 450 aa12.79□□□□□ -0.36
CCDC88A-201ENST00000263630 ZNF318Q5VUA4 2279 aa12.79□□□□□ -0.36
CCDC88A-201ENST00000263630 TRDV1A0A1B0GX56 115 aa12.79□□□□□ -0.36
CCDC88A-201ENST00000263630 CD1EP15812 388 aa12.79□□□□□ -0.36
CCDC88A-201ENST00000263630 SHHQ15465 462 aa12.79□□□□□ -0.36
CCDC88A-201ENST00000263630 SPRED1Q7Z699 444 aa12.79□□□□□ -0.36
CCDC88A-201ENST00000263630 NMNAT3Q96T66 252 aa12.79□□□□□ -0.36
CCDC88A-201ENST00000263630 CLMPQ9H6B4 373 aa12.79□□□□□ -0.36
CCDC88A-201ENST00000263630 IFT22Q9H7X7 185 aa12.79□□□□□ -0.36
CCDC88A-201ENST00000263630 SNX11Q9Y5W9 270 aa12.79□□□□□ -0.36
CCDC88A-201ENST00000263630 ZNF354AO60765 605 aaPredicted RBP12.79□□□□□ -0.36
CCDC88A-201ENST00000263630 SCRG1O75711 98 aa12.79□□□□□ -0.36
CCDC88A-201ENST00000263630 STAG3L3P0CL85 134 aa12.79□□□□□ -0.36
CCDC88A-201ENST00000263630 APEHP13798 732 aaKnown RBP12.79□□□□□ -0.36
CCDC88A-201ENST00000263630 GNG4P50150 75 aa12.79□□□□□ -0.36
CCDC88A-201ENST00000263630 OR13F1Q8NGS4 319 aa12.79□□□□□ -0.36
CCDC88A-201ENST00000263630 PARP12Q9H0J9 701 aaKnown RBP12.79□□□□□ -0.36
CCDC88A-201ENST00000263630 SLC17A4Q9Y2C5 497 aa12.79□□□□□ -0.36
CCDC88A-201ENST00000263630 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.79□□□□□ -0.36
CCDC88A-201ENST00000263630 MGMTP16455 207 aa12.79□□□□□ -0.36
CCDC88A-201ENST00000263630 CLDN12P56749 244 aa12.79□□□□□ -0.36
CCDC88A-201ENST00000263630 C21orf58P58505 322 aa12.79□□□□□ -0.36
CCDC88A-201ENST00000263630 FAM189BP81408 668 aa12.79□□□□□ -0.36
CCDC88A-201ENST00000263630 ABI3BPQ7Z7G0 1075 aa12.79□□□□□ -0.36
CCDC88A-201ENST00000263630 ISG20Q96AZ6 181 aaKnown RBP12.79□□□□□ -0.36
CCDC88A-201ENST00000263630 GPR78Q96P69 363 aa12.79□□□□□ -0.36
CCDC88A-201ENST00000263630 PLA2G12AQ9BZM1 189 aa12.79□□□□□ -0.36
CCDC88A-201ENST00000263630 ING1Q9UK53 422 aaPredicted RBP12.79□□□□□ -0.36
CCDC88A-201ENST00000263630 ADIPOQQ15848 244 aa12.79□□□□□ -0.36
CCDC88A-201ENST00000263630 ZFPM2Q8WW38 1151 aa12.79□□□□□ -0.36
CCDC88A-201ENST00000263630 SLC30A3Q99726 388 aa12.79□□□□□ -0.36
CCDC88A-201ENST00000263630 C1QBP02746 253 aa12.79□□□□□ -0.36
CCDC88A-201ENST00000263630 RPEL1Q2QD12 228 aa12.79□□□□□ -0.36
CCDC88A-201ENST00000263630 MEX3DQ86XN8 651 aaKnown RBP12.79□□□□□ -0.36
CCDC88A-201ENST00000263630 OR51S1Q8NGJ8 323 aa12.79□□□□□ -0.36
CCDC88A-201ENST00000263630 STARD5Q9NSY2 213 aa12.79□□□□□ -0.36
CCDC88A-201ENST00000263630 BCL9O00512 1426 aa12.79□□□□□ -0.36
CCDC88A-201ENST00000263630 C1orf105O95561 183 aa12.79□□□□□ -0.36
CCDC88A-201ENST00000263630 RAB38P57729 211 aa12.79□□□□□ -0.36
CCDC88A-201ENST00000263630 SNRPGP62308 76 aaKnown RBP12.79□□□□□ -0.36
CCDC88A-201ENST00000263630 CBLL1Q75N03 491 aa12.79□□□□□ -0.36
CCDC88A-201ENST00000263630 LYZL6O75951 148 aa12.79□□□□□ -0.36
CCDC88A-201ENST00000263630 SLC5A12Q1EHB4 618 aa12.79□□□□□ -0.36
CCDC88A-201ENST00000263630 GALMQ96C23 342 aa12.79□□□□□ -0.36
CCDC88A-201ENST00000263630 PRSS38A1L453 326 aa12.78□□□□□ -0.36
CCDC88A-201ENST00000263630 INPP5JQ15735 1006 aaPredicted RBP12.78□□□□□ -0.36
CCDC88A-201ENST00000263630 DEFB133Q30KQ1 61 aa12.78□□□□□ -0.36
CCDC88A-201ENST00000263630 CBARPQ8N350 705 aaPredicted RBP12.78□□□□□ -0.36
CCDC88A-201ENST00000263630 PLPP7Q8NBV4 271 aa12.78□□□□□ -0.36
CCDC88A-201ENST00000263630 TMEM116Q8NCL8 245 aa12.78□□□□□ -0.36
CCDC88A-201ENST00000263630 SLC26A10Q8NG04 563 aa12.78□□□□□ -0.36
CCDC88A-201ENST00000263630 WBP2Q969T9 261 aa12.78□□□□□ -0.36
CCDC88A-201ENST00000263630 OPN1LWP04000 364 aa12.78□□□□□ -0.36
CCDC88A-201ENST00000263630 LSM11P83369 360 aaKnown RBP eCLIP12.78□□□□□ -0.36
CCDC88A-201ENST00000263630 TRMT12Q53H54 448 aaKnown RBP12.78□□□□□ -0.36
CCDC88A-201ENST00000263630 TTC32Q5I0X7 151 aa12.78□□□□□ -0.36
CCDC88A-201ENST00000263630 CMBLQ96DG6 245 aa12.78□□□□□ -0.36
CCDC88A-201ENST00000263630 SLC39A13Q96H72 371 aa12.78□□□□□ -0.36
CCDC88A-201ENST00000263630 EDEM2Q9BV94 578 aa12.78□□□□□ -0.36
CCDC88A-201ENST00000263630 SLX4Q8IY92 1834 aa12.78□□□□□ -0.36
CCDC88A-201ENST00000263630 CDC14CA4D256 554 aa12.78□□□□□ -0.36
CCDC88A-201ENST00000263630 CLEC18AA5D8T8 446 aa12.78□□□□□ -0.36
CCDC88A-201ENST00000263630 RPL30P62888 115 aaKnown RBP12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms